FastQCFastQC Report
Sat 1 Dec 2012
SRR420813_1.fastq.gz

Summary

[OK] Basic Statistics

Measure Value
Filename SRR420813_1.fastq.gz
File type Conventional base calls
Encoding Sanger / Illumina 1.9
Total Sequences 18583010
Filtered Sequences 0
Sequence length 83
%GC 45

[FAIL] Per base sequence quality

Per base quality graph

[OK] Per sequence quality scores

Per Sequence quality graph

[FAIL] Per base sequence content

Per base sequence content

[FAIL] Per base GC content

Per base GC content graph

[OK] Per sequence GC content

Per sequence GC content graph

[OK] Per base N content

N content graph

[OK] Sequence Length Distribution

Sequence length distribution

[FAIL] Sequence Duplication Levels

Duplication level graph

[OK] Overrepresented sequences

No overrepresented sequences

[WARN] Kmer Content

Kmer graph

Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position
TCTTC 5159815 3.2896492 6.744436 7
GAAGA 4827770 3.2159462 6.9496675 2
CTTCT 4705190 2.9998024 6.7959223 1
TTCTT 5172510 2.7669618 5.3753057 6
AAGAA 4906880 2.6934378 6.887864 2
GGAGA 3097045 2.5036314 5.1880536 1
CTTCA 3611250 2.3059168 7.5956726 1
CTCCT 2943490 2.2366176 5.253295 1
CAAGA 3390810 2.2148693 6.5988483 1
GGGGG 1841050 2.191845 5.136481 70-74
CTCCA 2855035 2.1727567 7.5436454 1
TCTTG 3304005 2.1481953 5.391268 7
GGAAG 2562060 2.071153 5.2137485 1
CAACA 3227830 2.0674627 5.6031637 1
CTTTG 3003360 1.9527222 8.821957 1
AAAGA 3485330 1.9131341 5.5151086 2
CAAAG 2922785 1.9091563 6.392529 1
CTTGA 2864230 1.8651401 8.338842 1
CTTGG 2269895 1.7937835 9.087642 1
AAGAT 3149270 1.7260004 6.328969 3
GAGAT 2593480 1.7249422 5.401069 3
TTGGA 2563035 1.702063 5.5977244 2
CTTGT 2581825 1.6786487 5.6869593 1
CTCTG 2139480 1.657887 5.5513034 1
CAAAA 3072780 1.6539235 5.4493647 1
TCCAA 2583490 1.6522027 5.6804233 7
CTCAA 2541125 1.6251093 7.5032325 1
TTCAA 3010235 1.6152633 5.147775 7
TCAAA 2886785 1.5514145 5.099874 2
TTTGA 2835210 1.5490847 5.7708535 2
AGATC 2343700 1.5285378 6.405794 4
GATCT 2336315 1.5213704 5.9998555 5
CTGGA 1855340 1.468447 6.953933 1
CTTTT 2715260 1.4524903 5.2778788 1
CTCAG 1847520 1.4338588 8.03039 1
TTCAC 2243840 1.4327748 5.0582957 7
CTCCG 1525115 1.4085199 5.6680403 1
GAATC 2154065 1.4048597 5.6665845 4
CTGAG 1762445 1.3949233 5.629434 1
AGATT 2512685 1.3749868 5.291445 4
AATCT 2551985 1.3693707 5.246988 5
CTGAA 2072380 1.3515853 5.4796305 1
ATCCA 2062735 1.3191677 5.2397094 6
CTCGA 1278370 0.99214196 5.7011056 1
CTCGT 1247810 0.9669302 5.0202174 1
CTCGG 912565 0.8594917 6.0474815 1