FastQCFastQC Report
Fri 28 Dec 2012
SRR002073_1.fastq.gz

Summary

[OK] Basic Statistics

Measure Value
Filename SRR002073_1.fastq.gz
File type Conventional base calls
Encoding Sanger / Illumina 1.9
Total Sequences 9104944
Filtered Sequences 0
Sequence length 33
%GC 50

[FAIL] Per base sequence quality

Per base quality graph

[WARN] Per sequence quality scores

Per Sequence quality graph

[FAIL] Per base sequence content

Per base sequence content

[FAIL] Per base GC content

Per base GC content graph

[OK] Per sequence GC content

Per sequence GC content graph

[OK] Per base N content

N content graph

[OK] Sequence Length Distribution

Sequence length distribution

[OK] Sequence Duplication Levels

Duplication level graph

[WARN] Overrepresented sequences

Sequence Count Percentage Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 56163 0.6168406966588702 No Hit
GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 31030 0.3408038533789993 No Hit
CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 29630 0.3254275918665727 No Hit
TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 17427 0.19140150669789951 No Hit
ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 15380 0.16891921575794425 No Hit

[FAIL] Kmer Content

Kmer graph

Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position
AAAAA 2685280 10.89772 16.35504 2
CCAGG 516030 2.0868125 5.2367606 8
CTTCA 501320 2.0425448 5.4286118 6
CCAGC 491430 1.9748309 5.197434 8
AAAAT 469575 1.9171709 6.541483 3
CTCCA 474505 1.9139606 7.44265 6
GAAAA 457855 1.8623432 6.276263 1
TCCAG 458295 1.8602773 7.612678 7
CCACC 465790 1.8600221 5.90751 8
TCCTG 453140 1.850439 5.1429067 7
TTTCA 418305 1.7215277 5.021953 1
TTCCA 403685 1.6447474 5.216775 6
TCTGC 378570 1.5459255 5.186833 7
TCCAC 358030 1.444148 6.1705093 7
TCCAA 310530 1.2576226 5.4231124 7
ATCCA 290555 1.1767254 7.0173388 6
AAATC 276800 1.1255567 5.1984224 4