Basic Statistics
Measure | Value |
---|---|
Filename | SRR002073_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 9104944 |
Filtered Sequences | 0 |
Sequence length | 33 |
%GC | 50 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per base GC content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 56163 | 0.6168406966588702 | No Hit |
GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN | 31030 | 0.3408038533789993 | No Hit |
CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN | 29630 | 0.3254275918665727 | No Hit |
TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN | 17427 | 0.19140150669789951 | No Hit |
ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN | 15380 | 0.16891921575794425 | No Hit |
Kmer Content
Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AAAAA | 2685280 | 10.89772 | 16.35504 | 2 |
CCAGG | 516030 | 2.0868125 | 5.2367606 | 8 |
CTTCA | 501320 | 2.0425448 | 5.4286118 | 6 |
CCAGC | 491430 | 1.9748309 | 5.197434 | 8 |
AAAAT | 469575 | 1.9171709 | 6.541483 | 3 |
CTCCA | 474505 | 1.9139606 | 7.44265 | 6 |
GAAAA | 457855 | 1.8623432 | 6.276263 | 1 |
TCCAG | 458295 | 1.8602773 | 7.612678 | 7 |
CCACC | 465790 | 1.8600221 | 5.90751 | 8 |
TCCTG | 453140 | 1.850439 | 5.1429067 | 7 |
TTTCA | 418305 | 1.7215277 | 5.021953 | 1 |
TTCCA | 403685 | 1.6447474 | 5.216775 | 6 |
TCTGC | 378570 | 1.5459255 | 5.186833 | 7 |
TCCAC | 358030 | 1.444148 | 6.1705093 | 7 |
TCCAA | 310530 | 1.2576226 | 5.4231124 | 7 |
ATCCA | 290555 | 1.1767254 | 7.0173388 | 6 |
AAATC | 276800 | 1.1255567 | 5.1984224 | 4 |