FastQCFastQC Report
Sat 26 Jan 2013
lovell_1.fastq.gz

Summary

[OK] Basic Statistics

Measure Value
Filename lovell_1.fastq.gz
File type Conventional base calls
Encoding Sanger / Illumina 1.9
Total Sequences 123590441
Filtered Sequences 0
Sequence length 101
%GC 39

[OK] Per base sequence quality

Per base quality graph

[OK] Per sequence quality scores

Per Sequence quality graph

[WARN] Per base sequence content

Per base sequence content

[OK] Per base GC content

Per base GC content graph

[OK] Per sequence GC content

Per sequence GC content graph

[OK] Per base N content

N content graph

[OK] Sequence Length Distribution

Sequence length distribution

[WARN] Sequence Duplication Levels

Duplication level graph

[OK] Overrepresented sequences

No overrepresented sequences

[WARN] Kmer Content

Kmer graph

Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position
GGAAG 15337880 1.8091838 6.674472 5
GAGCA 11128750 1.3163522 6.1449485 9
AGAGC 10143580 1.1998224 6.0397167 8
TCGGA 7345905 0.87132096 5.6004643 3
ATCGG 6405195 0.7597404 5.556747 2
CGGAA 6181170 0.73113304 5.381553 4
GATCG 5725135 0.6790763 5.567729 1