FastQCFastQC Report
Fri 28 Dec 2012
SRR452441_1.fastq.gz

Summary

[OK] Basic Statistics

Measure Value
Filename SRR452441_1.fastq.gz
File type Conventional base calls
Encoding Sanger / Illumina 1.9
Total Sequences 2218610
Filtered Sequences 0
Sequence length 101
%GC 39

[OK] Per base sequence quality

Per base quality graph

[OK] Per sequence quality scores

Per Sequence quality graph

[WARN] Per base sequence content

Per base sequence content

[OK] Per base GC content

Per base GC content graph

[WARN] Per sequence GC content

Per sequence GC content graph

[OK] Per base N content

N content graph

[OK] Sequence Length Distribution

Sequence length distribution

[OK] Sequence Duplication Levels

Duplication level graph

[WARN] Overrepresented sequences

Sequence Count Percentage Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGCACACGAATCTCGTAT 10868 0.489856261352829 TruSeq Adapter, Index 5 (97% over 36bp)

[WARN] Kmer Content

Kmer graph

Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position
GAAGA 675885 2.7543154 7.8571186 6
GGAAG 445125 2.7487094 10.531035 5
CGGAA 358115 2.2377121 9.976414 4
GATCG 341650 2.196822 9.885427 1
ATCGG 339500 2.1829975 10.0074835 2
TCGGA 321270 2.0657778 10.016575 3
AAGAG 506390 2.0636024 7.2443304 7
AGAGC 320430 2.0022342 9.989448 8
GAGCA 311570 1.9468716 9.944591 9
AGATC 430980 1.8287932 5.976074 95-97
AGCAC 288760 1.8258015 6.9045053 95-97
CACAC 274280 1.7548722 6.596697 95-97
GCACA 271580 1.7171739 6.7368746 95-97
CGTCT 209105 1.4000529 5.140115 95-97
ACACG 208455 1.3180408 5.8445535 95-97
ACGTC 201955 1.3140228 5.281158 95-97
CACGT 190910 1.2421584 5.446293 95-97