Basic Statistics
Measure | Value |
---|---|
Filename | SRR452441_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2218610 |
Filtered Sequences | 0 |
Sequence length | 101 |
%GC | 39 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per base GC content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGCACACGAATCTCGTAT | 10868 | 0.489856261352829 | TruSeq Adapter, Index 5 (97% over 36bp) |
Kmer Content
Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GAAGA | 675885 | 2.7543154 | 7.8571186 | 6 |
GGAAG | 445125 | 2.7487094 | 10.531035 | 5 |
CGGAA | 358115 | 2.2377121 | 9.976414 | 4 |
GATCG | 341650 | 2.196822 | 9.885427 | 1 |
ATCGG | 339500 | 2.1829975 | 10.0074835 | 2 |
TCGGA | 321270 | 2.0657778 | 10.016575 | 3 |
AAGAG | 506390 | 2.0636024 | 7.2443304 | 7 |
AGAGC | 320430 | 2.0022342 | 9.989448 | 8 |
GAGCA | 311570 | 1.9468716 | 9.944591 | 9 |
AGATC | 430980 | 1.8287932 | 5.976074 | 95-97 |
AGCAC | 288760 | 1.8258015 | 6.9045053 | 95-97 |
CACAC | 274280 | 1.7548722 | 6.596697 | 95-97 |
GCACA | 271580 | 1.7171739 | 6.7368746 | 95-97 |
CGTCT | 209105 | 1.4000529 | 5.140115 | 95-97 |
ACACG | 208455 | 1.3180408 | 5.8445535 | 95-97 |
ACGTC | 201955 | 1.3140228 | 5.281158 | 95-97 |
CACGT | 190910 | 1.2421584 | 5.446293 | 95-97 |