Key | Value |
---|---|
Created on | 2018-05-20 14:46:06 |
Version | 9 |
Number of genes | 5,870 |
Number of gene clusters | 1,170 |
Partial genes excluded | No |
Minbit parameter | 0.5 |
Gene cluster min occurrence parameter | 1 |
MCL inflation parameter | 2.0 |
NCBI blastp or DIAMOND? | DIAMOND (and it was not sensitive) |
Number of genomes used | 5 |
Items aditional data keys | num_genomes_gene_cluster_has_hits, num_genes_in_gene_cluster, max_num_paralogs, SCG, WO_assignmnet, pct_alignment, cov_in_003, cov_in_007, cov_in_011, cov_in_012 |
Key | Value |
---|---|
Created on | Storage DB knows nothing :( |
Version | 6 |
Number of genomes described | 5 |
Functional annotation | Available |
Functional annotation sources | COG_CATEGORY, COG_FUNCTION |
This was a full summary (i.e., the `--quick` flag has not been used), hence the gene clusters summary file is not succint by any means.
The summary file: Wolbachia-Pan_gene_clusters_summary.txt.gz