#all_analysis.R - Regenerates all figures and random forest analyses presented
#CAMDA_metasub_kaiju_counts.RDS - Count matrix of initial 311 samples CAMDA challenge dataset
#CAMDA_mystery_kaiju_counts_c1.c2.RDS - Count matrix of CAMDA mystery challenge 1 and 2 samples
#CAMDA_mystery_kaiju_counts_c3.RDS - Count matrix of CAMDA mystery challenge 3 samples
#CAMDA18_MetaSUB_meta.xlsx - Metadata of 311 samples
#CAMDA18_MetaSUB_allmeta.xlsx - Metadata of all samples including initial 311 and all mystery samples
#Domain_level_relative_abundance.RDS - Kaiju Domain level counts