1	XLOC_151125	TCONS_00151607	LRRC16A	rna16973	sense	intergenic	5744	same_strand	upstream	no
1	XLOC_000541	TCONS_00000544	SLC16A12	rna241	sense	intergenic	1215	same_strand	upstream	no
0	XLOC_000541	TCONS_00000544	SLC16A12	rna244	sense	intergenic	3674	same_strand	upstream	no
0	XLOC_000541	TCONS_00000544	PANK1	rna239	sense	intergenic	5646	same_strand	downstream	no
0	XLOC_000541	TCONS_00000544	SLC16A12	rna242	sense	intergenic	1216	same_strand	upstream	no
0	XLOC_000541	TCONS_00000544	PANK1	rna240	sense	intergenic	5646	same_strand	downstream	no
0	XLOC_000541	TCONS_00000544	SLC16A12	rna243	sense	intergenic	3674	same_strand	upstream	no
0	XLOC_000541	TCONS_00000544	PANK1	rna238	sense	intergenic	5646	same_strand	downstream	no
1	XLOC_303732	TCONS_00304705	BCL6	rna34381	antisense	intergenic	48014	divergent	upstream	no
1	XLOC_153907	TCONS_00154406	PID1	rna17389	sense	genic	0	nested	intronic	no
0	XLOC_153907	TCONS_00154406	PID1	rna17391	sense	genic	0	nested	intronic	no
0	XLOC_153907	TCONS_00154406	PID1	rna17392	sense	genic	0	nested	intronic	no
0	XLOC_153907	TCONS_00154406	PID1	rna17387	sense	genic	0	nested	intronic	no
0	XLOC_153907	TCONS_00154406	PID1	rna17388	sense	genic	0	nested	intronic	no
0	XLOC_153907	TCONS_00154406	PID1	rna17393	sense	genic	0	nested	intronic	no
0	XLOC_153907	TCONS_00154406	PID1	rna17390	sense	genic	0	nested	intronic	no
1	XLOC_291066	TCONS_00291993	LOC106043964	rna32781	antisense	genic	0	nested	intronic	no
0	XLOC_291066	TCONS_00291993	PPEF2	rna32780	sense	intergenic	4233	same_strand	upstream	no
0	XLOC_291066	TCONS_00291993	PPEF2	rna32779	sense	intergenic	2947	same_strand	upstream	no
0	XLOC_291066	TCONS_00291993	NAAA	rna32782	sense	intergenic	951	same_strand	downstream	no
1	XLOC_163979	TCONS_00164509	CTNNA2	rna18569	antisense	genic	0	nested	intronic	no
0	XLOC_163979	TCONS_00164509	CTNNA2	rna18570	antisense	intergenic	923	divergent	upstream	no
0	XLOC_163979	TCONS_00164509	CTNNA2	rna18568	antisense	genic	0	nested	intronic	no
1	XLOC_288373	TCONS_00289290	FREM1	rna32546	antisense	intergenic	991	convergent	downstream	yes
0	XLOC_288373	TCONS_00289290	FREM1	rna32547	antisense	intergenic	991	convergent	downstream	yes
0	XLOC_288373	TCONS_00289290	FREM1	rna32544	antisense	intergenic	991	convergent	downstream	yes
0	XLOC_288373	TCONS_00289290	FREM1	rna32548	antisense	intergenic	991	convergent	downstream	yes
0	XLOC_288373	TCONS_00289290	FREM1	rna32542	antisense	intergenic	4094	convergent	downstream	yes
0	XLOC_288373	TCONS_00289290	FREM1	rna32541	antisense	intergenic	991	convergent	downstream	yes
0	XLOC_288373	TCONS_00289290	FREM1	rna32545	antisense	intergenic	991	convergent	downstream	yes
0	XLOC_288373	TCONS_00289290	CER1	rna32549	antisense	intergenic	2459	divergent	upstream	no
1	XLOC_143322	TCONS_00143778	ANKRD55	rna16260	antisense	intergenic	74740	divergent	upstream	no
0	XLOC_143322	TCONS_00143778	ANKRD55	rna16259	antisense	intergenic	74740	divergent	upstream	no
1	XLOC_284714	TCONS_00285624	FAM135B	rna32291	antisense	genic	0	nested	intronic	no
0	XLOC_284714	TCONS_00285624	FAM135B	rna32293	antisense	genic	0	nested	intronic	no
0	XLOC_284714	TCONS_00285624	FAM135B	rna32289	antisense	genic	0	nested	intronic	no
0	XLOC_284714	TCONS_00285624	FAM135B	rna32288	antisense	genic	0	nested	intronic	no
0	XLOC_284714	TCONS_00285624	FAM135B	rna32292	antisense	genic	0	nested	intronic	no
0	XLOC_284714	TCONS_00285624	FAM135B	rna32295	antisense	genic	0	nested	intronic	no
0	XLOC_284714	TCONS_00285624	FAM135B	rna32296	antisense	genic	0	nested	intronic	no
0	XLOC_284714	TCONS_00285624	FAM135B	rna32290	antisense	genic	0	nested	intronic	no
0	XLOC_284714	TCONS_00285624	FAM135B	rna32301	antisense	genic	0	nested	intronic	no
0	XLOC_284714	TCONS_00285624	FAM135B	rna32297	antisense	genic	0	nested	intronic	no
0	XLOC_284714	TCONS_00285624	FAM135B	rna32294	antisense	genic	0	nested	intronic	no
0	XLOC_284714	TCONS_00285624	FAM135B	rna32298	antisense	genic	0	nested	intronic	no
0	XLOC_284714	TCONS_00285624	FAM135B	rna32300	antisense	genic	0	nested	intronic	no
1	XLOC_074784	TCONS_00075008	CCDC177	rna8200	sense	intergenic	2959	same_strand	upstream	no
0	XLOC_074784	TCONS_00075008	SUSD6	rna8199	antisense	intergenic	4060	divergent	upstream	no
0	XLOC_074784	TCONS_00075008	SUSD6	rna8198	antisense	intergenic	4060	divergent	upstream	no
0	XLOC_074784	TCONS_00075008	SUSD6	rna8197	antisense	intergenic	4057	divergent	upstream	no
1	XLOC_110552	TCONS_00110914	FAM129A	rna13011	sense	intergenic	8429	same_strand	upstream	no
1	XLOC_092772	TCONS_00093063	LOC106032551	rna9973	antisense	intergenic	4997	convergent	downstream	no
1	XLOC_082926	TCONS_00083182	PLD1	rna8930	sense	intergenic	20038	same_strand	upstream	no
1	XLOC_074792	TCONS_00075016	GALNT16	rna8205	antisense	intergenic	3818	convergent	downstream	no
0	XLOC_074792	TCONS_00075016	GALNT16	rna8206	antisense	intergenic	3818	convergent	downstream	no
1	XLOC_335094	TCONS_00336164	LOC106047195	rna38632	sense	genic	0	nested	intronic	no
1	XLOC_104833	TCONS_00105183	LOC106033657	rna12042	sense	genic	0	nested	intronic	yes
0	XLOC_104833	TCONS_00105183	LOC106033656	rna12044	antisense	intergenic	6750	divergent	upstream	no
0	XLOC_104833	TCONS_00105183	LOC106033657	rna12043	sense	intergenic	1585	same_strand	upstream	yes
1	XLOC_130075	TCONS_00130482	WDFY2	rna15009	sense	intergenic	7357	same_strand	upstream	no
0	XLOC_130075	TCONS_00130482	INTS6	rna15012	antisense	intergenic	9131	divergent	upstream	no
0	XLOC_130075	TCONS_00130482	INTS6	rna15011	antisense	intergenic	9131	divergent	upstream	no
1	XLOC_164979	TCONS_00165512	SLC4A11	rna18604	sense	intergenic	25309	same_strand	upstream	no
1	XLOC_178470	TCONS_00179045	PHF6	rna19856	sense	genic	0	nested	intronic	no
0	XLOC_178470	TCONS_00179045	PHF6	rna19855	sense	genic	0	nested	intronic	no
1	XLOC_283154	TCONS_00284058	FPGT	rna32080	antisense	genic	0	nested	intronic	no
1	XLOC_027315	TCONS_00027396	NUMB	rna2978	sense	intergenic	3490	same_strand	upstream	no
0	XLOC_027315	TCONS_00027396	NUMB	rna2979	sense	intergenic	3490	same_strand	upstream	no
0	XLOC_027315	TCONS_00027396	NUMB	rna2977	sense	intergenic	3490	same_strand	upstream	no
0	XLOC_027315	TCONS_00027396	NUMB	rna2980	sense	intergenic	3490	same_strand	upstream	no
0	XLOC_027315	TCONS_00027396	NUMB	rna2976	sense	intergenic	3490	same_strand	upstream	no
0	XLOC_027315	TCONS_00027396	NUMB	rna2975	sense	intergenic	3490	same_strand	upstream	no
1	XLOC_231891	TCONS_00232615	LOC106040546	rna26288	sense	intergenic	29066	same_strand	upstream	no
0	XLOC_231891	TCONS_00232615	LOC106040546	rna26289	sense	intergenic	29066	same_strand	upstream	no
1	XLOC_302885	TCONS_00303853	SERTAD2	rna34224	antisense	intergenic	5936	convergent	downstream	no
0	XLOC_302885	TCONS_00303853	AFTPH	rna34228	sense	intergenic	9089	same_strand	downstream	no
0	XLOC_302885	TCONS_00303853	LOC106044700	rna34226	sense	intergenic	6810	same_strand	downstream	no
0	XLOC_302885	TCONS_00303853	LOC106044700	rna34227	sense	intergenic	6810	same_strand	downstream	no
0	XLOC_302885	TCONS_00303853	LOC106044700	rna34225	sense	intergenic	6810	same_strand	downstream	no
0	XLOC_302885	TCONS_00303853	SERTAD2	rna34223	antisense	intergenic	5936	convergent	downstream	no
1	XLOC_141951	TCONS_00142400	GSAP	rna16123	sense	genic	0	nested	intronic	no
0	XLOC_141951	TCONS_00142400	GSAP	rna16124	sense	genic	0	nested	intronic	no
0	XLOC_141951	TCONS_00142400	GSAP	rna16122	sense	genic	0	nested	intronic	no
1	XLOC_160752	TCONS_00161274	NSUN2	rna18060	sense	intergenic	3793	same_strand	downstream	no
1	XLOC_284198	TCONS_00285107	ARRDC3	rna32233	sense	intergenic	10584	same_strand	upstream	yes
0	XLOC_284198	TCONS_00285107	ARRDC3	rna32232	sense	intergenic	10585	same_strand	upstream	yes
1	XLOC_249589	TCONS_00250387	LOC106041776	rna28571	antisense	intergenic	4076	convergent	downstream	no
1	XLOC_232642	TCONS_00233368	LOC106040545	rna26363	sense	intergenic	17099	same_strand	upstream	no
1	XLOC_007063	TCONS_00007080	LOC106032959	rna1053	sense	genic	0	nested	intronic	no
0	XLOC_007063	TCONS_00007080	LOC106032959	rna1059	sense	genic	0	nested	intronic	no
0	XLOC_007063	TCONS_00007080	LOC106032959	rna1061	sense	genic	0	nested	intronic	no
1	XLOC_245987	TCONS_00246771	CDC73	rna28178	sense	genic	0	nested	intronic	no
1	XLOC_326503	TCONS_00327539	RCL1	rna37208	antisense	intergenic	16432	convergent	downstream	no
1	XLOC_312458	TCONS_00313457	LOC106045285	rna35190	sense	intergenic	10900	same_strand	upstream	no
0	XLOC_312458	TCONS_00313457	LOC106045285	rna35191	sense	intergenic	10900	same_strand	upstream	no
0	XLOC_312458	TCONS_00313457	LOC106045285	rna35192	sense	intergenic	10900	same_strand	upstream	no
0	XLOC_312458	TCONS_00313457	LOC106045285	rna35193	sense	intergenic	10900	same_strand	upstream	no
1	XLOC_035948	TCONS_00036057	LOC106049763	rna4290	antisense	genic	0	nested	intronic	no
0	XLOC_035948	TCONS_00036057	SCCPDH	rna4292	sense	intergenic	8623	same_strand	upstream	yes
0	XLOC_035948	TCONS_00036057	LOC106049770	rna4291	sense	intergenic	3843	same_strand	downstream	no
1	XLOC_060761	TCONS_00060941	KCNS3	rna6519	sense	intergenic	96230	same_strand	downstream	yes
1	XLOC_263351	TCONS_00264192	ANXA5	rna29886	sense	intergenic	7316	same_strand	downstream	no
0	XLOC_263351	TCONS_00264192	ANXA5	rna29887	sense	intergenic	8895	same_strand	downstream	no
0	XLOC_263351	TCONS_00264192	ANXA5	rna29889	sense	intergenic	7316	same_strand	downstream	no
0	XLOC_263351	TCONS_00264192	ANXA5	rna29888	sense	intergenic	7316	same_strand	downstream	no
1	XLOC_060584	TCONS_00060764	FAM49A	rna6492	antisense	intergenic	10230	convergent	downstream	no
0	XLOC_060584	TCONS_00060764	FAM49A	rna6495	antisense	intergenic	12079	convergent	downstream	no
0	XLOC_060584	TCONS_00060764	FAM49A	rna6493	antisense	intergenic	10230	convergent	downstream	no
0	XLOC_060584	TCONS_00060764	FAM49A	rna6497	antisense	intergenic	12079	convergent	downstream	no
0	XLOC_060584	TCONS_00060764	FAM49A	rna6494	antisense	intergenic	12079	convergent	downstream	no
0	XLOC_060584	TCONS_00060764	FAM49A	rna6496	antisense	intergenic	12079	convergent	downstream	no
1	XLOC_118989	TCONS_00119363	LOC106034580	rna13785	sense	intergenic	33336	same_strand	upstream	no
0	XLOC_118989	TCONS_00119363	LOC106034580	rna13784	sense	intergenic	33336	same_strand	upstream	no
0	XLOC_118989	TCONS_00119363	LOC106034580	rna13786	sense	intergenic	33336	same_strand	upstream	no
1	XLOC_188479	TCONS_00189081	LOC106038126	rna21275	sense	intergenic	55535	same_strand	downstream	no
1	XLOC_177751	TCONS_00178322	HTR2C	rna19922	antisense	genic	0	nested	intronic	no
0	XLOC_177751	TCONS_00178322	HTR2C	rna19924	antisense	genic	0	nested	intronic	no
0	XLOC_177751	TCONS_00178322	HTR2C	rna19925	antisense	genic	0	nested	intronic	no
0	XLOC_177751	TCONS_00178322	HTR2C	rna19923	antisense	genic	0	nested	intronic	no
0	XLOC_177751	TCONS_00178322	HTR2C	rna19931	antisense	genic	0	nested	intronic	no
0	XLOC_177751	TCONS_00178322	HTR2C	rna19928	antisense	genic	0	nested	intronic	no
0	XLOC_177751	TCONS_00178322	HTR2C	rna19926	antisense	genic	0	nested	intronic	no
0	XLOC_177751	TCONS_00178322	HTR2C	rna19929	antisense	genic	0	nested	intronic	no
0	XLOC_177751	TCONS_00178322	HTR2C	rna19930	antisense	genic	0	nested	intronic	no
0	XLOC_177751	TCONS_00178322	HTR2C	rna19927	antisense	genic	0	nested	intronic	no
1	XLOC_318534	TCONS_00319551	PPM1E	rna36117	sense	genic	0	nested	intronic	yes
0	XLOC_318534	TCONS_00319551	PPM1E	rna36115	sense	genic	0	nested	intronic	yes
0	XLOC_318534	TCONS_00319551	PPM1E	rna36116	sense	genic	0	nested	intronic	yes
0	XLOC_318534	TCONS_00319551	PPM1E	rna36118	sense	intergenic	5032	same_strand	upstream	yes
0	XLOC_318534	TCONS_00319551	PPM1E	rna36114	sense	genic	0	nested	intronic	yes
1	XLOC_254366	TCONS_00255177	ZNF277	rna29141	sense	intergenic	2129	same_strand	downstream	no
1	XLOC_101123	TCONS_00101444	LOC106033263	rna11329	sense	intergenic	13631	same_strand	downstream	no
0	XLOC_101123	TCONS_00101444	LOC106033115	rna11328	sense	intergenic	18407	same_strand	upstream	no
1	XLOC_343196	TCONS_00344302	LOC106047763	rna39612	sense	intergenic	41773	same_strand	upstream	no
0	XLOC_343196	TCONS_00344302	LOC106047761	rna39614	antisense	intergenic	45323	convergent	downstream	no
0	XLOC_343196	TCONS_00344302	LOC106047761	rna39613	antisense	intergenic	45323	convergent	downstream	no
1	XLOC_322403	TCONS_00323430	HSPA14	rna36806	sense	intergenic	27482	same_strand	upstream	no
1	XLOC_125138	TCONS_00125528	ANKH	rna14707	sense	genic	0	nested	intronic	no
1	XLOC_119302	TCONS_00119678	ACKR3	rna13865	sense	intergenic	18204	same_strand	downstream	yes
0	XLOC_119302	TCONS_00119678	LOC106034437	rna13866	sense	intergenic	18367	same_strand	upstream	no
0	XLOC_119302	TCONS_00119678	LOC106034437	rna13867	sense	intergenic	18367	same_strand	upstream	no
0	XLOC_119302	TCONS_00119678	ACKR3	rna13862	sense	intergenic	18204	same_strand	downstream	yes
0	XLOC_119302	TCONS_00119678	LOC106034437	rna13868	sense	intergenic	18369	same_strand	upstream	no
0	XLOC_119302	TCONS_00119678	ACKR3	rna13864	sense	intergenic	18204	same_strand	downstream	yes
1	XLOC_314922	TCONS_00315926	EPB41L1	rna35471	sense	genic	0	nested	intronic	no
0	XLOC_314922	TCONS_00315926	EPB41L1	rna35476	sense	intergenic	5487	same_strand	upstream	no
0	XLOC_314922	TCONS_00315926	EPB41L1	rna35477	sense	intergenic	5487	same_strand	upstream	no
0	XLOC_314922	TCONS_00315926	EPB41L1	rna35472	sense	genic	0	nested	intronic	no
0	XLOC_314922	TCONS_00315926	EPB41L1	rna35479	sense	intergenic	5487	same_strand	upstream	no
0	XLOC_314922	TCONS_00315926	EPB41L1	rna35478	sense	intergenic	5487	same_strand	upstream	no
0	XLOC_314922	TCONS_00315926	EPB41L1	rna35474	sense	genic	0	nested	intronic	no
0	XLOC_314922	TCONS_00315926	EPB41L1	rna35475	sense	intergenic	5487	same_strand	upstream	no
0	XLOC_314922	TCONS_00315926	EPB41L1	rna35480	sense	intergenic	5487	same_strand	upstream	no
0	XLOC_314922	TCONS_00315926	EPB41L1	rna35473	sense	genic	0	nested	intronic	no
1	XLOC_117536	TCONS_00117906	IL12B	rna13735	sense	intergenic	17	same_strand	upstream	no
1	XLOC_044046	TCONS_00044186	PARD3B	rna5201	antisense	genic	0	nested	intronic	no
1	XLOC_199136	TCONS_00199768	SEC24B	rna22354	sense	intergenic	82369	same_strand	upstream	yes
1	XLOC_074838	TCONS_00075063	LOC106031667	rna8228	sense	genic	0	nested	intronic	no
0	XLOC_074838	TCONS_00075063	RAD51B	rna8230	antisense	intergenic	6446	convergent	downstream	no
0	XLOC_074838	TCONS_00075063	RAD51B	rna8229	antisense	intergenic	6446	convergent	downstream	no
0	XLOC_074838	TCONS_00075063	LOC106031667	rna8232	sense	intergenic	7375	same_strand	upstream	no
0	XLOC_074838	TCONS_00075063	LOC106031667	rna8227	sense	genic	0	nested	intronic	no
0	XLOC_074838	TCONS_00075063	RAD51B	rna8231	antisense	intergenic	6446	convergent	downstream	no
1	XLOC_011955	TCONS_00011992	CTBP1	rna1207	sense	intergenic	4080	same_strand	downstream	no
0	XLOC_011955	TCONS_00011992	CTBP1	rna1205	sense	intergenic	4080	same_strand	downstream	no
0	XLOC_011955	TCONS_00011992	CTBP1	rna1202	sense	intergenic	4080	same_strand	downstream	no
0	XLOC_011955	TCONS_00011992	CTBP1	rna1203	sense	intergenic	4080	same_strand	downstream	no
0	XLOC_011955	TCONS_00011992	CTBP1	rna1206	sense	intergenic	4080	same_strand	downstream	no
0	XLOC_011955	TCONS_00011992	CTBP1	rna1208	sense	intergenic	4080	same_strand	downstream	no
0	XLOC_011955	TCONS_00011992	CTBP1	rna1204	sense	intergenic	4080	same_strand	downstream	no
1	XLOC_347400	TCONS_00348520	BNC2	rna40378	sense	genic	0	nested	intronic	no
1	XLOC_332497	TCONS_00333555	PTH1R	rna37982	antisense	intergenic	6413	divergent	upstream	no
0	XLOC_332497	TCONS_00333555	PTH1R	rna37983	antisense	intergenic	6924	divergent	upstream	no
1	XLOC_289318	TCONS_00290239	ACVR1	rna32654	sense	intergenic	3248	same_strand	downstream	no
0	XLOC_289318	TCONS_00290239	ACVR1	rna32653	sense	intergenic	7160	same_strand	downstream	no
0	XLOC_289318	TCONS_00290239	ACVR1	rna32650	sense	intergenic	7160	same_strand	downstream	no
0	XLOC_289318	TCONS_00290239	ACVR1	rna32652	sense	intergenic	7160	same_strand	downstream	no
0	XLOC_289318	TCONS_00290239	ACVR1	rna32651	sense	intergenic	7160	same_strand	downstream	no
1	XLOC_096844	TCONS_00097150	LOC106032991	rna10759	antisense	intergenic	3697	convergent	downstream	no
0	XLOC_096844	TCONS_00097150	LOC106032991	rna10760	antisense	intergenic	3697	convergent	downstream	no
1	XLOC_216371	TCONS_00217065	LOC106039643	rna24428	sense	intergenic	99115	same_strand	upstream	no
1	XLOC_111628	TCONS_00111991	LOC106034154	rna13130	antisense	intergenic	26150	divergent	upstream	no
0	XLOC_111628	TCONS_00111991	LOC106034154	rna13129	antisense	intergenic	26150	divergent	upstream	no
1	XLOC_184698	TCONS_00185296	CDKL5	rna20565	sense	intergenic	2107	same_strand	upstream	no
1	XLOC_209622	TCONS_00210296	DNAJB11	rna23338	sense	intergenic	1657	same_strand	downstream	no
0	XLOC_209622	TCONS_00210296	PFKL	rna23340	sense	intergenic	4575	same_strand	upstream	yes
0	XLOC_209622	TCONS_00210296	PROCR	rna23339	antisense	intergenic	1798	convergent	downstream	no
1	XLOC_355887	TCONS_00357057	CTSS	rna41977	sense	intergenic	387	same_strand	upstream	no
0	XLOC_355887	TCONS_00357057	ARNT	rna41970	sense	intergenic	7212	same_strand	downstream	no
0	XLOC_355887	TCONS_00357057	SSR2	rna41978	antisense	intergenic	9346	convergent	downstream	no
0	XLOC_355887	TCONS_00357057	ARNT	rna41971	sense	intergenic	7212	same_strand	downstream	no
0	XLOC_355887	TCONS_00357057	ARNT	rna41975	sense	intergenic	7212	same_strand	downstream	no
0	XLOC_355887	TCONS_00357057	ARNT	rna41974	sense	intergenic	7212	same_strand	downstream	no
0	XLOC_355887	TCONS_00357057	ARNT	rna41969	sense	intergenic	7212	same_strand	downstream	no
0	XLOC_355887	TCONS_00357057	ARNT	rna41967	sense	intergenic	7212	same_strand	downstream	no
0	XLOC_355887	TCONS_00357057	ARNT	rna41968	sense	intergenic	7212	same_strand	downstream	no
0	XLOC_355887	TCONS_00357057	ARNT	rna41972	sense	intergenic	7212	same_strand	downstream	no
0	XLOC_355887	TCONS_00357057	ARNT	rna41973	sense	intergenic	7212	same_strand	downstream	no
0	XLOC_355887	TCONS_00357057	CTSK	rna41976	sense	intergenic	428	same_strand	downstream	yes
1	XLOC_039681	TCONS_00039814	BRE	rna4495	antisense	intergenic	7978	convergent	downstream	no
0	XLOC_039681	TCONS_00039814	BRE	rna4494	antisense	intergenic	9434	convergent	downstream	no
0	XLOC_039681	TCONS_00039814	BRE	rna4497	antisense	intergenic	9434	convergent	downstream	no
0	XLOC_039681	TCONS_00039814	BRE	rna4498	antisense	intergenic	9434	convergent	downstream	no
0	XLOC_039681	TCONS_00039814	BRE	rna4496	antisense	intergenic	9434	convergent	downstream	no
1	XLOC_157749	TCONS_00158264	LOC106036405	rna17861	antisense	intergenic	53688	convergent	downstream	no
0	XLOC_157749	TCONS_00158264	LOC106036407	rna17859	antisense	intergenic	56947	divergent	upstream	no
0	XLOC_157749	TCONS_00158264	LOC106036407	rna17858	antisense	intergenic	56947	divergent	upstream	no
0	XLOC_157749	TCONS_00158264	LOC106036407	rna17860	antisense	intergenic	56947	divergent	upstream	no
1	XLOC_334968	TCONS_00336037	KIAA1755	rna38569	antisense	genic	0	nested	intronic	no
1	XLOC_295297	TCONS_00296234	RERE	rna33444	sense	genic	0	nested	intronic	no
1	XLOC_005472	TCONS_00005484	RTKN2	rna733	antisense	intergenic	2800	convergent	downstream	yes
0	XLOC_005472	TCONS_00005484	ARID5B	rna742	sense	intergenic	5154	same_strand	downstream	no
0	XLOC_005472	TCONS_00005484	RTKN2	rna731	antisense	intergenic	2800	convergent	downstream	yes
0	XLOC_005472	TCONS_00005484	RTKN2	rna735	antisense	intergenic	2800	convergent	downstream	yes
0	XLOC_005472	TCONS_00005484	RTKN2	rna736	antisense	intergenic	2800	convergent	downstream	yes
0	XLOC_005472	TCONS_00005484	RTKN2	rna740	antisense	intergenic	2800	convergent	downstream	yes
0	XLOC_005472	TCONS_00005484	RTKN2	rna738	antisense	intergenic	2800	convergent	downstream	yes
0	XLOC_005472	TCONS_00005484	RTKN2	rna741	antisense	intergenic	2800	convergent	downstream	yes
0	XLOC_005472	TCONS_00005484	RTKN2	rna732	antisense	intergenic	2800	convergent	downstream	yes
0	XLOC_005472	TCONS_00005484	RTKN2	rna739	antisense	intergenic	2800	convergent	downstream	yes
0	XLOC_005472	TCONS_00005484	RTKN2	rna737	antisense	intergenic	2800	convergent	downstream	yes
0	XLOC_005472	TCONS_00005484	ARID5B	rna743	sense	intergenic	5154	same_strand	downstream	no
0	XLOC_005472	TCONS_00005484	RTKN2	rna734	antisense	intergenic	2800	convergent	downstream	yes
0	XLOC_005472	TCONS_00005484	RTKN2	rna730	antisense	intergenic	2800	convergent	downstream	yes
1	XLOC_305925	TCONS_00306906	LOC106044902	rna34501	sense	intergenic	1644	same_strand	downstream	no
0	XLOC_305925	TCONS_00306906	LOC106044902	rna34500	sense	intergenic	1644	same_strand	downstream	no
1	XLOC_354739	TCONS_00355903	LOC106049084	rna41701	sense	intergenic	35653	same_strand	upstream	no
1	XLOC_063383	TCONS_00063575	GNPDA2	rna6537	sense	intergenic	42009	same_strand	upstream	no
0	XLOC_063383	TCONS_00063575	GUF1	rna6535	antisense	intergenic	49123	convergent	downstream	no
1	XLOC_230433	TCONS_00231156	ANOS1	rna26128	sense	intergenic	3696	same_strand	upstream	yes
0	XLOC_230433	TCONS_00231156	ANOS1	rna26127	sense	intergenic	3696	same_strand	upstream	yes
1	XLOC_002690	TCONS_00002698	NRG3	rna915	antisense	genic	0	nested	intronic	no
0	XLOC_002690	TCONS_00002698	NRG3	rna914	antisense	genic	0	nested	intronic	no
0	XLOC_002690	TCONS_00002698	NRG3	rna917	antisense	genic	0	nested	intronic	no
0	XLOC_002690	TCONS_00002698	NRG3	rna916	antisense	genic	0	nested	intronic	no
1	XLOC_310039	TCONS_00311029	PRDX3	rna35048	sense	intergenic	1425	same_strand	upstream	no
0	XLOC_310039	TCONS_00311029	SFXN4	rna35049	sense	intergenic	8506	same_strand	upstream	no
1	XLOC_048875	TCONS_00049026	OTUD1	rna5691	sense	intergenic	23813	same_strand	downstream	yes
1	XLOC_094370	TCONS_00094665	SHROOM1	rna10261	sense	genic	0	nested	intronic	no
0	XLOC_094370	TCONS_00094665	LOC106032752	rna10262	antisense	intergenic	934	divergent	upstream	no
1	XLOC_095430	TCONS_00095729	SPRY4	rna10245	antisense	intergenic	8696	convergent	downstream	no
1	XLOC_082508	TCONS_00082756	SOX8	rna9259	antisense	intergenic	63044	convergent	downstream	no
0	XLOC_082508	TCONS_00082756	SSTR5	rna9258	antisense	intergenic	69324	divergent	upstream	no
1	XLOC_011100	TCONS_00011131	FOXN3	rna1847	sense	genic	0	nested	intronic	no
0	XLOC_011100	TCONS_00011131	FOXN3	rna1839	sense	genic	0	nested	intronic	no
0	XLOC_011100	TCONS_00011131	FOXN3	rna1846	sense	genic	0	nested	intronic	no
0	XLOC_011100	TCONS_00011131	FOXN3	rna1838	sense	genic	0	nested	intronic	no
0	XLOC_011100	TCONS_00011131	FOXN3	rna1844	sense	genic	0	nested	intronic	no
0	XLOC_011100	TCONS_00011131	FOXN3	rna1848	sense	genic	0	nested	intronic	no
0	XLOC_011100	TCONS_00011131	FOXN3	rna1841	sense	genic	0	nested	intronic	no
0	XLOC_011100	TCONS_00011131	FOXN3	rna1843	sense	genic	0	nested	intronic	no
0	XLOC_011100	TCONS_00011131	FOXN3	rna1840	sense	genic	0	nested	intronic	no
0	XLOC_011100	TCONS_00011131	FOXN3	rna1845	sense	genic	0	nested	intronic	no
0	XLOC_011100	TCONS_00011131	FOXN3	rna1842	sense	genic	0	nested	intronic	no
1	XLOC_166532	TCONS_00167068	LOC106036820	rna18702	antisense	intergenic	11225	convergent	downstream	no
1	XLOC_034937	TCONS_00035045	TSNAX	rna4046	sense	intergenic	17925	same_strand	downstream	no
0	XLOC_034937	TCONS_00035045	TSNAX	rna4045	sense	intergenic	17926	same_strand	downstream	no
0	XLOC_034937	TCONS_00035045	DISC1	rna4050	sense	intergenic	19582	same_strand	upstream	no
0	XLOC_034937	TCONS_00035045	DISC1	rna4047	sense	intergenic	19582	same_strand	upstream	no
0	XLOC_034937	TCONS_00035045	DISC1	rna4051	sense	intergenic	19582	same_strand	upstream	no
0	XLOC_034937	TCONS_00035045	DISC1	rna4048	sense	intergenic	19582	same_strand	upstream	no
0	XLOC_034937	TCONS_00035045	DISC1	rna4049	sense	intergenic	19582	same_strand	upstream	no
0	XLOC_034937	TCONS_00035045	TSNAX	rna4044	sense	intergenic	17925	same_strand	downstream	no
1	XLOC_073013	TCONS_00073232	EHD3	rna8155	antisense	intergenic	6720	convergent	downstream	no
1	XLOC_306172	TCONS_00307154	UHRF1	rna34651	antisense	intergenic	703	convergent	downstream	yes
0	XLOC_306172	TCONS_00307154	KDM4B	rna34650	antisense	intergenic	5023	divergent	upstream	no
1	XLOC_345696	TCONS_00346809	LOC106048035	rna40139	sense	genic	0	nested	intronic	no
1	XLOC_039763	TCONS_00039897	PIGF	rna4548	antisense	genic	0	nested	intronic	no
0	XLOC_039763	TCONS_00039897	PIGF	rna4547	antisense	genic	0	nested	intronic	no
0	XLOC_039763	TCONS_00039897	PIGF	rna4544	antisense	genic	0	nested	intronic	no
0	XLOC_039763	TCONS_00039897	PIGF	rna4546	antisense	genic	0	nested	intronic	no
0	XLOC_039763	TCONS_00039897	PIGF	rna4545	antisense	genic	0	nested	intronic	no
0	XLOC_039763	TCONS_00039897	RHOQ	rna4549	sense	intergenic	2368	same_strand	downstream	yes
1	XLOC_141579	TCONS_00142028	SEMA3D	rna16179	antisense	genic	0	nested	intronic	no
0	XLOC_141579	TCONS_00142028	SEMA3D	rna16178	antisense	genic	0	nested	intronic	no
0	XLOC_141579	TCONS_00142028	SEMA3D	rna16180	antisense	genic	0	nested	intronic	no
1	XLOC_040987	TCONS_00041123	UBR3	rna4956	sense	genic	0	nested	intronic	no
0	XLOC_040987	TCONS_00041123	UBR3	rna4955	sense	genic	0	nested	intronic	no
0	XLOC_040987	TCONS_00041123	UBR3	rna4954	sense	genic	0	nested	intronic	no
1	XLOC_104833	TCONS_00105182	LOC106033657	rna12042	sense	genic	0	nested	intronic	yes
0	XLOC_104833	TCONS_00105182	LOC106033656	rna12044	antisense	intergenic	6750	divergent	upstream	no
0	XLOC_104833	TCONS_00105182	LOC106033657	rna12043	sense	intergenic	1585	same_strand	upstream	yes
1	XLOC_053441	TCONS_00053605	CSMD1	rna5980	antisense	genic	0	nested	intronic	no
1	XLOC_351438	TCONS_00352574	DLC1	rna41030	antisense	genic	0	nested	intronic	yes
0	XLOC_351438	TCONS_00352574	DLC1	rna41023	antisense	genic	0	nested	intronic	yes
0	XLOC_351438	TCONS_00352574	DLC1	rna41027	antisense	genic	0	nested	intronic	yes
0	XLOC_351438	TCONS_00352574	DLC1	rna41024	antisense	genic	0	nested	intronic	yes
0	XLOC_351438	TCONS_00352574	DLC1	rna41026	antisense	genic	0	nested	intronic	yes
0	XLOC_351438	TCONS_00352574	DLC1	rna41031	antisense	genic	0	nested	intronic	yes
0	XLOC_351438	TCONS_00352574	DLC1	rna41032	antisense	genic	0	nested	intronic	yes
0	XLOC_351438	TCONS_00352574	DLC1	rna41025	antisense	genic	0	nested	intronic	yes
1	XLOC_198889	TCONS_00199519	ANK2	rna22257	sense	genic	0	nested	intronic	no
0	XLOC_198889	TCONS_00199519	ANK2	rna22259	sense	genic	0	nested	intronic	no
0	XLOC_198889	TCONS_00199519	ANK2	rna22258	sense	genic	0	nested	intronic	no
1	XLOC_189009	TCONS_00189612	ITPR2	rna21387	antisense	intergenic	16754	divergent	upstream	no
1	XLOC_265405	TCONS_00266253	LOC106042544	rna30093	sense	intergenic	144	same_strand	upstream	no
1	XLOC_177828	TCONS_00178400	FOXO4	rna19943	sense	intergenic	468	same_strand	upstream	no
0	XLOC_177828	TCONS_00178400	SNX12	rna19942	antisense	intergenic	3696	divergent	upstream	no
0	XLOC_177828	TCONS_00178400	LOC106037440	rna19944	antisense	intergenic	4312	convergent	downstream	no
1	XLOC_256947	TCONS_00257769	NYX	rna29279	sense	genic	0	nested	intronic	yes
0	XLOC_256947	TCONS_00257769	NYX	rna29280	sense	genic	0	nested	intronic	yes
0	XLOC_256947	TCONS_00257769	NYX	rna29273	sense	genic	0	nested	intronic	yes
0	XLOC_256947	TCONS_00257769	NYX	rna29272	sense	genic	0	nested	intronic	yes
0	XLOC_256947	TCONS_00257769	NYX	rna29274	sense	genic	0	nested	intronic	yes
0	XLOC_256947	TCONS_00257769	NYX	rna29276	sense	genic	0	nested	intronic	yes
0	XLOC_256947	TCONS_00257769	NYX	rna29277	sense	genic	0	nested	intronic	yes
0	XLOC_256947	TCONS_00257769	NYX	rna29275	sense	genic	0	nested	intronic	yes
0	XLOC_256947	TCONS_00257769	NYX	rna29278	sense	genic	0	nested	intronic	yes
1	XLOC_324877	TCONS_00325911	LOC106046336	rna37088	sense	intergenic	490	same_strand	upstream	no
0	XLOC_324877	TCONS_00325911	LOC106046335	rna37086	antisense	intergenic	8373	convergent	downstream	yes
0	XLOC_324877	TCONS_00325911	LOC106046335	rna37085	antisense	intergenic	8373	convergent	downstream	yes
0	XLOC_324877	TCONS_00325911	RNPS1	rna37089	antisense	intergenic	3460	divergent	upstream	no
0	XLOC_324877	TCONS_00325911	LOC106046337	rna37087	antisense	intergenic	4335	convergent	downstream	yes
0	XLOC_324877	TCONS_00325911	LOC106046335	rna37084	antisense	intergenic	8373	convergent	downstream	yes
1	XLOC_037464	TCONS_00037579	RHOU	rna4039	sense	intergenic	26483	same_strand	downstream	no
1	XLOC_153086	TCONS_00153578	LOC106036040	rna17238	antisense	intergenic	5264	convergent	downstream	no
1	XLOC_343051	TCONS_00344155	RACGAP1	rna39571	antisense	intergenic	4164	convergent	downstream	yes
0	XLOC_343051	TCONS_00344155	HDAC7	rna39562	antisense	intergenic	8638	divergent	upstream	no
0	XLOC_343051	TCONS_00344155	LOC106047726	rna39570	antisense	intergenic	7414	divergent	upstream	no
0	XLOC_343051	TCONS_00344155	HDAC7	rna39563	antisense	intergenic	9053	divergent	upstream	no
0	XLOC_343051	TCONS_00344155	RACGAP1	rna39572	antisense	intergenic	4164	convergent	downstream	yes
1	XLOC_358767	TCONS_00359946	LOC106029474	rna43133	sense	genic	0	nested	intronic	no
0	XLOC_358767	TCONS_00359946	LOC106029476	rna43132	sense	intergenic	9055	same_strand	upstream	no
1	XLOC_352257	TCONS_00353398	BSN	rna41274	sense	intergenic	3094	same_strand	upstream	no
0	XLOC_352257	TCONS_00353398	TRAIP	rna41275	sense	intergenic	7969	same_strand	downstream	no
1	XLOC_299994	TCONS_00300952	LOC106044537	rna33872	antisense	intergenic	32687	convergent	downstream	no
0	XLOC_299994	TCONS_00300952	LOC106044537	rna33874	antisense	intergenic	32687	convergent	downstream	no
0	XLOC_299994	TCONS_00300952	LOC106044537	rna33877	antisense	intergenic	32687	convergent	downstream	no
0	XLOC_299994	TCONS_00300952	LOC106044537	rna33879	antisense	intergenic	32687	convergent	downstream	no
0	XLOC_299994	TCONS_00300952	LOC106044537	rna33876	antisense	intergenic	32687	convergent	downstream	no
0	XLOC_299994	TCONS_00300952	LOC106044537	rna33875	antisense	intergenic	32687	convergent	downstream	no
0	XLOC_299994	TCONS_00300952	LOC106044537	rna33878	antisense	intergenic	32687	convergent	downstream	no
0	XLOC_299994	TCONS_00300952	LOC106044537	rna33871	antisense	intergenic	32687	convergent	downstream	no
0	XLOC_299994	TCONS_00300952	LOC106044537	rna33873	antisense	intergenic	32687	convergent	downstream	no
1	XLOC_094357	TCONS_00094652	AFF4	rna10254	sense	intergenic	1264	same_strand	upstream	no
0	XLOC_094357	TCONS_00094652	AFF4	rna10255	sense	intergenic	7720	same_strand	upstream	no
0	XLOC_094357	TCONS_00094652	ZCCHC10	rna10252	sense	intergenic	3998	same_strand	downstream	no
0	XLOC_094357	TCONS_00094652	ZCCHC10	rna10253	sense	intergenic	3998	same_strand	downstream	no
0	XLOC_094357	TCONS_00094652	AFF4	rna10256	sense	intergenic	7722	same_strand	upstream	no
0	XLOC_094357	TCONS_00094652	ZCCHC10	rna10251	sense	intergenic	3998	same_strand	downstream	no
1	XLOC_113389	TCONS_00113754	LOC106034151	rna13196	antisense	intergenic	84536	convergent	downstream	no
1	XLOC_032053	TCONS_00032149	ACSS3	rna3653	sense	genic	0	nested	intronic	no
1	XLOC_324794	TCONS_00325827	LOC106046347	rna37121	antisense	intergenic	21503	convergent	downstream	no
1	XLOC_037464	TCONS_00037578	RHOU	rna4039	sense	intergenic	26522	same_strand	downstream	no
1	XLOC_332405	TCONS_00333461	DHX30	rna37942	antisense	intergenic	2928	convergent	downstream	no
0	XLOC_332405	TCONS_00333461	MAP4	rna37939	sense	intergenic	4319	same_strand	downstream	no
0	XLOC_332405	TCONS_00333461	MAP4	rna37938	sense	intergenic	4319	same_strand	downstream	no
0	XLOC_332405	TCONS_00333461	MAP4	rna37940	sense	intergenic	4319	same_strand	downstream	no
1	XLOC_199247	TCONS_00199880	HADH	rna22368	sense	intergenic	2767	same_strand	downstream	no
0	XLOC_199247	TCONS_00199880	LEF1	rna22364	antisense	intergenic	8666	convergent	downstream	no
0	XLOC_199247	TCONS_00199880	LEF1	rna22365	antisense	intergenic	8666	convergent	downstream	no
0	XLOC_199247	TCONS_00199880	LEF1	rna22363	antisense	intergenic	5703	convergent	downstream	no
0	XLOC_199247	TCONS_00199880	LEF1	rna22366	antisense	intergenic	8666	convergent	downstream	no
1	XLOC_211325	TCONS_00212004	CCNT2	rna23628	sense	genic	0	nested	intronic	no
0	XLOC_211325	TCONS_00212004	ACMSD	rna23630	sense	intergenic	6113	same_strand	downstream	yes
0	XLOC_211325	TCONS_00212004	ACMSD	rna23631	sense	intergenic	6113	same_strand	downstream	yes
0	XLOC_211325	TCONS_00212004	CCNT2	rna23627	sense	genic	0	nested	intronic	no
0	XLOC_211325	TCONS_00212004	CCNT2	rna23626	sense	genic	0	nested	intronic	no
0	XLOC_211325	TCONS_00212004	ACMSD	rna23634	sense	intergenic	6113	same_strand	downstream	yes
0	XLOC_211325	TCONS_00212004	ACMSD	rna23635	sense	intergenic	6113	same_strand	downstream	yes
0	XLOC_211325	TCONS_00212004	CCNT2	rna23625	sense	genic	0	nested	intronic	no
0	XLOC_211325	TCONS_00212004	ACMSD	rna23636	sense	intergenic	6113	same_strand	downstream	yes
0	XLOC_211325	TCONS_00212004	ACMSD	rna23633	sense	intergenic	6113	same_strand	downstream	yes
0	XLOC_211325	TCONS_00212004	CCNT2	rna23629	sense	genic	0	nested	intronic	no
0	XLOC_211325	TCONS_00212004	ACMSD	rna23638	sense	intergenic	6113	same_strand	downstream	yes
0	XLOC_211325	TCONS_00212004	ACMSD	rna23632	sense	intergenic	6113	same_strand	downstream	yes
0	XLOC_211325	TCONS_00212004	ACMSD	rna23637	sense	intergenic	6113	same_strand	downstream	yes
1	XLOC_120210	TCONS_00120588	ASB1	rna13811	sense	intergenic	63	same_strand	downstream	no
1	XLOC_036786	TCONS_00036897	KCNK5	rna4465	antisense	intergenic	27285	convergent	downstream	no
1	XLOC_016682	TCONS_00016736	F5	rna2044	sense	intergenic	2760	same_strand	downstream	no
0	XLOC_016682	TCONS_00016736	F5	rna2045	sense	intergenic	2761	same_strand	downstream	no
0	XLOC_016682	TCONS_00016736	SLC19A2	rna2047	sense	intergenic	5323	same_strand	upstream	no
0	XLOC_016682	TCONS_00016736	F5	rna2046	sense	intergenic	2761	same_strand	downstream	no
1	XLOC_182245	TCONS_00182839	KCTD1	rna20153	sense	genic	0	nested	intronic	no
0	XLOC_182245	TCONS_00182839	KCTD1	rna20154	sense	genic	0	nested	intronic	no
1	XLOC_117561	TCONS_00117933	HTR4	rna13743	antisense	intergenic	3206	convergent	downstream	no
0	XLOC_117561	TCONS_00117933	FBXO38	rna13739	sense	intergenic	4610	same_strand	downstream	no
0	XLOC_117561	TCONS_00117933	FBXO38	rna13741	sense	intergenic	4610	same_strand	downstream	no
0	XLOC_117561	TCONS_00117933	FBXO38	rna13738	sense	intergenic	4610	same_strand	downstream	no
0	XLOC_117561	TCONS_00117933	FBXO38	rna13740	sense	intergenic	4610	same_strand	downstream	no
0	XLOC_117561	TCONS_00117933	FBXO38	rna13742	sense	intergenic	4610	same_strand	downstream	no
1	XLOC_095905	TCONS_00096206	LOC106032806	rna10432	antisense	intergenic	1238	divergent	upstream	no
0	XLOC_095905	TCONS_00096206	MAPK9	rna10434	sense	intergenic	8668	same_strand	downstream	no
0	XLOC_095905	TCONS_00096206	MAPK9	rna10435	sense	intergenic	8668	same_strand	downstream	no
0	XLOC_095905	TCONS_00096206	MAPK9	rna10433	sense	intergenic	8668	same_strand	downstream	no
0	XLOC_095905	TCONS_00096206	LOC106032895	rna10431	sense	intergenic	7907	same_strand	upstream	no
0	XLOC_095905	TCONS_00096206	LOC106032895	rna10430	sense	intergenic	7907	same_strand	upstream	no
1	XLOC_309921	TCONS_00310909	LOC106045183	rna35001	sense	intergenic	13034	same_strand	upstream	no
0	XLOC_309921	TCONS_00310909	LOC106045183	rna35002	sense	intergenic	14856	same_strand	upstream	no
1	XLOC_177814	TCONS_00178385	DLG3	rna19937	sense	genic	0	nested	intronic	no
1	XLOC_306736	TCONS_00307721	NDUFS6	rna34718	sense	intergenic	1918	same_strand	downstream	no
1	XLOC_302915	TCONS_00303883	LOC106044698	rna34236	antisense	intergenic	3600	convergent	downstream	no
0	XLOC_302915	TCONS_00303883	LOC106044698	rna34233	antisense	intergenic	3602	convergent	downstream	no
0	XLOC_302915	TCONS_00303883	LOC106044698	rna34237	antisense	intergenic	3600	convergent	downstream	no
0	XLOC_302915	TCONS_00303883	LOC106044698	rna34232	antisense	intergenic	3600	convergent	downstream	no
0	XLOC_302915	TCONS_00303883	LOC106044698	rna34231	antisense	intergenic	3600	convergent	downstream	no
0	XLOC_302915	TCONS_00303883	LOC106044698	rna34229	antisense	intergenic	3600	convergent	downstream	no
0	XLOC_302915	TCONS_00303883	LOC106044698	rna34230	antisense	intergenic	3600	convergent	downstream	no
0	XLOC_302915	TCONS_00303883	LOC106044698	rna34234	antisense	intergenic	3600	convergent	downstream	no
1	XLOC_226496	TCONS_00227207	LOC106040381	rna25862	antisense	intergenic	8227	divergent	upstream	no
1	XLOC_133596	TCONS_00134007	TENM3	rna15491	sense	genic	0	nested	intronic	no
0	XLOC_133596	TCONS_00134007	TENM3	rna15488	sense	genic	0	nested	intronic	no
1	XLOC_154201	TCONS_00154702	SCG2	rna17490	sense	intergenic	12585	same_strand	upstream	no
1	XLOC_065812	TCONS_00066008	BRAF	rna6994	sense	genic	0	nested	intronic	no
1	XLOC_071365	TCONS_00071573	LOC106031380	rna7854	sense	intergenic	54456	same_strand	upstream	no
1	XLOC_198887	TCONS_00199517	ANK2	rna22257	sense	genic	0	nested	intronic	no
0	XLOC_198887	TCONS_00199517	ANK2	rna22260	sense	intergenic	8107	same_strand	upstream	no
0	XLOC_198887	TCONS_00199517	ANK2	rna22273	sense	intergenic	8120	same_strand	upstream	no
0	XLOC_198887	TCONS_00199517	ANK2	rna22276	sense	intergenic	8120	same_strand	upstream	no
0	XLOC_198887	TCONS_00199517	ANK2	rna22264	sense	intergenic	8108	same_strand	upstream	no
0	XLOC_198887	TCONS_00199517	ANK2	rna22275	sense	intergenic	8120	same_strand	upstream	no
0	XLOC_198887	TCONS_00199517	ANK2	rna22262	sense	intergenic	8107	same_strand	upstream	no
0	XLOC_198887	TCONS_00199517	ANK2	rna22270	sense	intergenic	8120	same_strand	upstream	no
0	XLOC_198887	TCONS_00199517	ANK2	rna22263	sense	intergenic	8108	same_strand	upstream	no
0	XLOC_198887	TCONS_00199517	ANK2	rna22269	sense	intergenic	8119	same_strand	upstream	no
0	XLOC_198887	TCONS_00199517	ANK2	rna22274	sense	intergenic	8120	same_strand	upstream	no
0	XLOC_198887	TCONS_00199517	ANK2	rna22259	sense	genic	0	nested	intronic	no
0	XLOC_198887	TCONS_00199517	ANK2	rna22261	sense	intergenic	8107	same_strand	upstream	no
0	XLOC_198887	TCONS_00199517	ANK2	rna22272	sense	intergenic	8120	same_strand	upstream	no
0	XLOC_198887	TCONS_00199517	ANK2	rna22279	sense	intergenic	8129	same_strand	upstream	no
0	XLOC_198887	TCONS_00199517	ANK2	rna22271	sense	intergenic	8120	same_strand	upstream	no
0	XLOC_198887	TCONS_00199517	ANK2	rna22268	sense	intergenic	8119	same_strand	upstream	no
0	XLOC_198887	TCONS_00199517	ANK2	rna22280	sense	intergenic	8130	same_strand	upstream	no
0	XLOC_198887	TCONS_00199517	ANK2	rna22281	sense	intergenic	8131	same_strand	upstream	no
0	XLOC_198887	TCONS_00199517	ANK2	rna22258	sense	genic	0	nested	intronic	no
0	XLOC_198887	TCONS_00199517	ANK2	rna22266	sense	intergenic	8119	same_strand	upstream	no
0	XLOC_198887	TCONS_00199517	ANK2	rna22267	sense	intergenic	8119	same_strand	upstream	no
0	XLOC_198887	TCONS_00199517	ANK2	rna22278	sense	intergenic	8128	same_strand	upstream	no
0	XLOC_198887	TCONS_00199517	ANK2	rna22277	sense	intergenic	8121	same_strand	upstream	no
0	XLOC_198887	TCONS_00199517	ANK2	rna22265	sense	intergenic	8119	same_strand	upstream	no
1	XLOC_129153	TCONS_00129558	LRCH1	rna15118	antisense	intergenic	14300	divergent	upstream	no
1	XLOC_292472	TCONS_00293399	FERMT2	rna33030	sense	intergenic	9083	same_strand	upstream	yes
1	XLOC_201357	TCONS_00201992	LOC106038808	rna22602	antisense	intergenic	5063	convergent	downstream	no
0	XLOC_201357	TCONS_00201992	MIPOL1	rna22599	sense	intergenic	9518	same_strand	downstream	no
0	XLOC_201357	TCONS_00201992	MIPOL1	rna22600	sense	intergenic	9518	same_strand	downstream	no
0	XLOC_201357	TCONS_00201992	MIPOL1	rna22591	sense	intergenic	9518	same_strand	downstream	no
0	XLOC_201357	TCONS_00201992	MIPOL1	rna22593	sense	intergenic	9518	same_strand	downstream	no
0	XLOC_201357	TCONS_00201992	MIPOL1	rna22592	sense	intergenic	9518	same_strand	downstream	no
0	XLOC_201357	TCONS_00201992	MIPOL1	rna22601	sense	intergenic	9518	same_strand	downstream	no
0	XLOC_201357	TCONS_00201992	MIPOL1	rna22594	sense	intergenic	9518	same_strand	downstream	no
1	XLOC_253643	TCONS_00254453	SLC2A13	rna29110	sense	genic	0	nested	intronic	no
0	XLOC_253643	TCONS_00254453	SLC2A13	rna29109	sense	genic	0	nested	intronic	no
0	XLOC_253643	TCONS_00254453	SLC2A13	rna29111	sense	genic	0	nested	intronic	no
0	XLOC_253643	TCONS_00254453	SLC2A13	rna29113	sense	genic	0	nested	intronic	no
0	XLOC_253643	TCONS_00254453	SLC2A13	rna29112	sense	genic	0	nested	intronic	no
1	XLOC_338330	TCONS_00339421	LOX	rna39014	antisense	intergenic	1927	divergent	upstream	no
0	XLOC_338330	TCONS_00339421	LOX	rna39013	antisense	intergenic	1927	divergent	upstream	no
1	XLOC_238757	TCONS_00239524	AUTS2	rna27274	antisense	genic	0	nested	intronic	no
1	XLOC_031825	TCONS_00031921	DOCK4	rna4032	antisense	intergenic	23935	divergent	upstream	no
1	XLOC_120035	TCONS_00120412	LOC106034470	rna14066	sense	intergenic	3788	same_strand	downstream	no
0	XLOC_120035	TCONS_00120412	LOC106034470	rna14065	sense	intergenic	3788	same_strand	downstream	no
1	XLOC_079454	TCONS_00079694	LOC106031885	rna8727	antisense	intergenic	8372	convergent	downstream	no
1	XLOC_321303	TCONS_00322330	LOC106046053	rna36577	antisense	intergenic	2176	convergent	downstream	no
0	XLOC_321303	TCONS_00322330	LOC106046054	rna36575	sense	intergenic	3599	same_strand	downstream	no
0	XLOC_321303	TCONS_00322330	LOC106046050	rna36574	antisense	intergenic	5017	divergent	upstream	no
0	XLOC_321303	TCONS_00322330	LOC106046053	rna36576	antisense	intergenic	2176	convergent	downstream	no
1	XLOC_106950	TCONS_00107304	SOX6	rna12728	sense	genic	0	nested	intronic	yes
0	XLOC_106950	TCONS_00107304	SOX6	rna12738	sense	genic	0	nested	intronic	yes
0	XLOC_106950	TCONS_00107304	SOX6	rna12736	sense	genic	0	nested	intronic	yes
0	XLOC_106950	TCONS_00107304	SOX6	rna12729	sense	genic	0	nested	intronic	yes
0	XLOC_106950	TCONS_00107304	SOX6	rna12726	sense	genic	0	nested	intronic	yes
0	XLOC_106950	TCONS_00107304	SOX6	rna12744	sense	genic	0	nested	intronic	yes
0	XLOC_106950	TCONS_00107304	SOX6	rna12733	sense	genic	0	nested	intronic	yes
0	XLOC_106950	TCONS_00107304	SOX6	rna12725	sense	genic	0	nested	intronic	yes
0	XLOC_106950	TCONS_00107304	SOX6	rna12727	sense	genic	0	nested	intronic	yes
0	XLOC_106950	TCONS_00107304	SOX6	rna12734	sense	genic	0	nested	intronic	yes
0	XLOC_106950	TCONS_00107304	SOX6	rna12741	sense	genic	0	nested	intronic	yes
0	XLOC_106950	TCONS_00107304	SOX6	rna12743	sense	genic	0	nested	intronic	yes
0	XLOC_106950	TCONS_00107304	SOX6	rna12742	sense	genic	0	nested	intronic	yes
0	XLOC_106950	TCONS_00107304	SOX6	rna12739	sense	genic	0	nested	intronic	yes
0	XLOC_106950	TCONS_00107304	LOC106033943	rna12740	antisense	intergenic	7357	divergent	upstream	no
0	XLOC_106950	TCONS_00107304	SOX6	rna12731	sense	genic	0	nested	intronic	yes
0	XLOC_106950	TCONS_00107304	SOX6	rna12737	sense	genic	0	nested	intronic	yes
0	XLOC_106950	TCONS_00107304	SOX6	rna12730	sense	genic	0	nested	intronic	yes
0	XLOC_106950	TCONS_00107304	SOX6	rna12735	sense	genic	0	nested	intronic	yes
1	XLOC_109208	TCONS_00109568	LOC106034011	rna13028	sense	intergenic	39270	same_strand	downstream	no
1	XLOC_089651	TCONS_00089930	PTPRK	rna9809	sense	intergenic	39636	same_strand	upstream	no
0	XLOC_089651	TCONS_00089930	PTPRK	rna9808	sense	intergenic	39636	same_strand	upstream	no
0	XLOC_089651	TCONS_00089930	PTPRK	rna9807	sense	intergenic	39636	same_strand	upstream	no
1	XLOC_116715	TCONS_00117084	SLIT3	rna13618	sense	genic	0	nested	intronic	no
0	XLOC_116715	TCONS_00117084	SLIT3	rna13617	sense	genic	0	nested	intronic	no
0	XLOC_116715	TCONS_00117084	SLIT3	rna13616	sense	genic	0	nested	intronic	no
0	XLOC_116715	TCONS_00117084	SLIT3	rna13619	sense	genic	0	nested	intronic	no
1	XLOC_071113	TCONS_00071320	SPECC1L	rna7676	sense	intergenic	7395	same_strand	downstream	no
0	XLOC_071113	TCONS_00071320	SPECC1L	rna7677	sense	intergenic	7395	same_strand	downstream	no
1	XLOC_228511	TCONS_00229228	PSD3	rna25966	antisense	intergenic	11083	convergent	downstream	no
0	XLOC_228511	TCONS_00229228	PSD3	rna25970	antisense	intergenic	11083	convergent	downstream	no
0	XLOC_228511	TCONS_00229228	PSD3	rna25968	antisense	intergenic	11083	convergent	downstream	no
0	XLOC_228511	TCONS_00229228	PSD3	rna25967	antisense	intergenic	11083	convergent	downstream	no
0	XLOC_228511	TCONS_00229228	PSD3	rna25969	antisense	intergenic	11083	convergent	downstream	no
1	XLOC_042480	TCONS_00042619	ITGB5	rna4676	sense	intergenic	1560	same_strand	downstream	yes
0	XLOC_042480	TCONS_00042619	UMPS	rna4675	antisense	intergenic	2928	convergent	downstream	no
0	XLOC_042480	TCONS_00042619	KALRN	rna4668	antisense	intergenic	9826	convergent	downstream	no
0	XLOC_042480	TCONS_00042619	KALRN	rna4667	antisense	intergenic	9826	convergent	downstream	no
0	XLOC_042480	TCONS_00042619	KALRN	rna4665	antisense	intergenic	9826	convergent	downstream	no
0	XLOC_042480	TCONS_00042619	KALRN	rna4664	antisense	intergenic	9826	convergent	downstream	no
0	XLOC_042480	TCONS_00042619	KALRN	rna4660	antisense	intergenic	9826	convergent	downstream	no
0	XLOC_042480	TCONS_00042619	KALRN	rna4662	antisense	intergenic	9826	convergent	downstream	no
0	XLOC_042480	TCONS_00042619	KALRN	rna4659	antisense	intergenic	9826	convergent	downstream	no
0	XLOC_042480	TCONS_00042619	KALRN	rna4663	antisense	intergenic	9826	convergent	downstream	no
0	XLOC_042480	TCONS_00042619	KALRN	rna4671	antisense	intergenic	9826	convergent	downstream	no
0	XLOC_042480	TCONS_00042619	KALRN	rna4666	antisense	intergenic	9826	convergent	downstream	no
0	XLOC_042480	TCONS_00042619	KALRN	rna4672	antisense	intergenic	9826	convergent	downstream	no
0	XLOC_042480	TCONS_00042619	KALRN	rna4661	antisense	intergenic	9826	convergent	downstream	no
1	XLOC_131609	TCONS_00132018	MTUS1	rna15312	antisense	genic	0	nested	intronic	no
0	XLOC_131609	TCONS_00132018	MTUS1	rna15311	antisense	genic	0	nested	intronic	no
1	XLOC_332712	TCONS_00333778	LOC106046851	rna38045	sense	intergenic	3262	same_strand	upstream	no
0	XLOC_332712	TCONS_00333778	LOC106046851	rna38046	sense	intergenic	8717	same_strand	upstream	no
0	XLOC_332712	TCONS_00333778	USP32	rna38044	sense	intergenic	7444	same_strand	downstream	no
1	XLOC_092922	TCONS_00093215	SLC16A10	rna9996	sense	intergenic	20671	same_strand	upstream	no
1	XLOC_020945	TCONS_00021010	LOC106037274	rna2269	sense	genic	0	nested	intronic	no
1	XLOC_341819	TCONS_00342922	WASL	rna39421	antisense	intergenic	5553	divergent	upstream	no
1	XLOC_143808	TCONS_00144265	LOC106035592	gene7408	sense	intergenic	35019	same_strand	downstream	no
1	XLOC_280986	TCONS_00281882	BACH1	rna31789	antisense	intergenic	5893	divergent	upstream	no
1	XLOC_144460	TCONS_00144920	ANKRD55	rna16260	sense	intergenic	9672	same_strand	upstream	no
0	XLOC_144460	TCONS_00144920	ANKRD55	rna16259	sense	intergenic	9672	same_strand	upstream	no
1	XLOC_043598	TCONS_00043737	OSBPL6	rna5109	antisense	intergenic	1656	divergent	upstream	no
0	XLOC_043598	TCONS_00043737	RBM45	rna5108	antisense	intergenic	9348	convergent	downstream	no
1	XLOC_292442	TCONS_00293369	DDHD1	rna33027	sense	intergenic	55827	same_strand	upstream	no
0	XLOC_292442	TCONS_00293369	DDHD1	rna33026	sense	intergenic	55827	same_strand	upstream	no
1	XLOC_128137	TCONS_00128536	LDLRAD4	rna14936	antisense	genic	0	nested	intronic	yes
0	XLOC_128137	TCONS_00128536	LDLRAD4	rna14937	antisense	genic	0	nested	intronic	yes
1	XLOC_023549	TCONS_00023621	LOC106041481	rna2709	antisense	intergenic	3206	divergent	upstream	no
0	XLOC_023549	TCONS_00023621	LOC106041481	rna2710	antisense	intergenic	3206	divergent	upstream	no
0	XLOC_023549	TCONS_00023621	LOC106041481	rna2708	antisense	intergenic	3206	divergent	upstream	no
1	XLOC_050831	TCONS_00050989	ICK	rna5964	sense	genic	0	nested	intronic	no
0	XLOC_050831	TCONS_00050989	ICK	rna5963	sense	genic	0	nested	intronic	no
0	XLOC_050831	TCONS_00050989	ICK	rna5962	sense	genic	0	nested	intronic	no
0	XLOC_050831	TCONS_00050989	ICK	rna5961	sense	genic	0	nested	intronic	no
0	XLOC_050831	TCONS_00050989	FBXO9	rna5959	antisense	intergenic	5679	divergent	upstream	no
0	XLOC_050831	TCONS_00050989	ICK	rna5965	sense	genic	0	nested	intronic	no
0	XLOC_050831	TCONS_00050989	ICK	rna5960	sense	genic	0	nested	intronic	no
1	XLOC_168852	TCONS_00169399	LOC106036913	rna18988	antisense	intergenic	2749	convergent	downstream	no
0	XLOC_168852	TCONS_00169399	CNOT4	rna18989	antisense	intergenic	7031	divergent	upstream	no
1	XLOC_064291	TCONS_00064484	KLHL42	rna6720	sense	intergenic	10182	same_strand	downstream	no
0	XLOC_064291	TCONS_00064484	KLHL42	rna6721	sense	intergenic	12540	same_strand	downstream	no
1	XLOC_124471	TCONS_00124860	LOC106034860	rna14760	antisense	intergenic	32999	divergent	upstream	no
1	XLOC_178814	TCONS_00179390	LOC106037507	rna19966	sense	intergenic	2094	same_strand	downstream	no
1	XLOC_082926	TCONS_00083180	PLD1	rna8930	sense	intergenic	20038	same_strand	upstream	no
1	XLOC_307410	TCONS_00308395	LOC106045074	rna34791	sense	intergenic	37198	same_strand	downstream	no
0	XLOC_307410	TCONS_00308395	XPC	rna34792	antisense	intergenic	39601	divergent	upstream	yes
1	XLOC_280214	TCONS_00281107	KIAA1024	rna31589	antisense	intergenic	8229	divergent	upstream	yes
0	XLOC_280214	TCONS_00281107	KIAA1024	rna31588	antisense	intergenic	8229	divergent	upstream	yes
1	XLOC_149127	TCONS_00149603	GTPBP1	rna16834	antisense	intergenic	544	convergent	downstream	no
0	XLOC_149127	TCONS_00149603	SUN2	rna16836	sense	intergenic	1121	same_strand	downstream	no
0	XLOC_149127	TCONS_00149603	GTPBP1	rna16835	antisense	intergenic	544	convergent	downstream	no
1	XLOC_350555	TCONS_00351689	RUSC2	rna40899	sense	genic	0	nested	intronic	no
0	XLOC_350555	TCONS_00351689	RUSC2	rna40900	sense	genic	0	nested	intronic	no
0	XLOC_350555	TCONS_00351689	RUSC2	rna40902	sense	genic	0	nested	intronic	no
0	XLOC_350555	TCONS_00351689	RUSC2	rna40905	sense	genic	0	nested	intronic	no
0	XLOC_350555	TCONS_00351689	RUSC2	rna40903	sense	genic	0	nested	intronic	no
0	XLOC_350555	TCONS_00351689	RUSC2	rna40901	sense	genic	0	nested	intronic	no
0	XLOC_350555	TCONS_00351689	RUSC2	rna40904	sense	genic	0	nested	intronic	no
1	XLOC_007999	TCONS_00008023	FGFR3	rna1230	sense	intergenic	25564	same_strand	upstream	yes
0	XLOC_007999	TCONS_00008023	FGFR3	rna1233	sense	intergenic	25564	same_strand	upstream	yes
0	XLOC_007999	TCONS_00008023	FGFR3	rna1234	sense	intergenic	25564	same_strand	upstream	yes
0	XLOC_007999	TCONS_00008023	FGFR3	rna1232	sense	intergenic	25564	same_strand	upstream	yes
0	XLOC_007999	TCONS_00008023	FGFR3	rna1231	sense	intergenic	25564	same_strand	upstream	yes
1	XLOC_264739	TCONS_00265584	LOC106042569	rna30075	antisense	intergenic	60735	divergent	upstream	no
1	XLOC_028910	TCONS_00029001	LOC106040969	rna3441	sense	intergenic	18247	same_strand	upstream	no
1	XLOC_302222	TCONS_00303188	LOC106044715	rna34175	sense	intergenic	5248	same_strand	downstream	no
0	XLOC_302222	TCONS_00303188	LOC106044715	rna34176	sense	intergenic	5248	same_strand	downstream	no
1	XLOC_220446	TCONS_00221144	VPS4B	rna24950	antisense	intergenic	1671	divergent	upstream	no
1	XLOC_346002	TCONS_00347117	NECAP1	rna40152	antisense	intergenic	493	divergent	upstream	no
0	XLOC_346002	TCONS_00347117	C3AR1	rna40153	sense	intergenic	8166	same_strand	upstream	no
1	XLOC_005098	TCONS_00005109	LOC106030828	rna624	sense	intergenic	2797	same_strand	upstream	no
1	XLOC_217339	TCONS_00218034	TRIM29	rna24539	sense	intergenic	10962	same_strand	downstream	no
0	XLOC_217339	TCONS_00218034	TRIM29	rna24537	sense	intergenic	10988	same_strand	downstream	no
0	XLOC_217339	TCONS_00218034	TRIM29	rna24538	sense	intergenic	10988	same_strand	downstream	no
0	XLOC_217339	TCONS_00218034	TRIM29	rna24543	sense	intergenic	10988	same_strand	downstream	no
0	XLOC_217339	TCONS_00218034	TRIM29	rna24540	sense	intergenic	10962	same_strand	downstream	no
0	XLOC_217339	TCONS_00218034	TRIM29	rna24544	sense	intergenic	10988	same_strand	downstream	no
0	XLOC_217339	TCONS_00218034	TRIM29	rna24541	sense	intergenic	10988	same_strand	downstream	no
0	XLOC_217339	TCONS_00218034	TRIM29	rna24542	sense	intergenic	10988	same_strand	downstream	no
1	XLOC_118989	TCONS_00119364	LOC106034580	rna13785	sense	intergenic	25682	same_strand	upstream	no
0	XLOC_118989	TCONS_00119364	LOC106034580	rna13784	sense	intergenic	25682	same_strand	upstream	no
0	XLOC_118989	TCONS_00119364	LOC106034580	rna13786	sense	intergenic	25682	same_strand	upstream	no
1	XLOC_254886	TCONS_00255698	CFTR	rna29184	sense	genic	0	nested	intronic	no
1	XLOC_102772	TCONS_00103104	LOC106033435	rna11538	antisense	genic	0	nested	intronic	no
0	XLOC_102772	TCONS_00103104	LOC106033435	rna11537	antisense	genic	0	nested	intronic	no
0	XLOC_102772	TCONS_00103104	LOC106033435	rna11536	antisense	genic	0	nested	intronic	no
0	XLOC_102772	TCONS_00103104	LOC106033435	rna11539	antisense	genic	0	nested	intronic	no
0	XLOC_102772	TCONS_00103104	LOC106033435	rna11540	antisense	genic	0	nested	intronic	no
1	XLOC_051607	TCONS_00051765	LOC106030486	rna6032	sense	genic	0	nested	intronic	no
0	XLOC_051607	TCONS_00051765	LOC106030480	rna6031	sense	intergenic	6738	same_strand	downstream	no
1	XLOC_107590	TCONS_00107944	LOC106033823	rna12539	antisense	intergenic	8644	convergent	downstream	no
0	XLOC_107590	TCONS_00107944	LOC106033822	rna12541	sense	intergenic	8933	same_strand	upstream	no
0	XLOC_107590	TCONS_00107944	LOC106033822	rna12540	sense	intergenic	8933	same_strand	upstream	no
1	XLOC_192096	TCONS_00192711	LOC106038356	rna21682	antisense	intergenic	1682	divergent	upstream	no
0	XLOC_192096	TCONS_00192711	LOC106038377	rna21680	antisense	intergenic	7630	convergent	downstream	no
0	XLOC_192096	TCONS_00192711	LOC106038356	rna21683	antisense	intergenic	1684	divergent	upstream	no
0	XLOC_192096	TCONS_00192711	LOC106038357	rna21684	antisense	intergenic	1713	divergent	upstream	no
0	XLOC_192096	TCONS_00192711	LOC106038377	rna21681	antisense	intergenic	7630	convergent	downstream	no
1	XLOC_112992	TCONS_00113356	CCDC82	rna13116	antisense	intergenic	75186	divergent	upstream	no
1	XLOC_041647	TCONS_00041786	SSFA2	rna5159	sense	intergenic	2072	same_strand	downstream	no
0	XLOC_041647	TCONS_00041786	PPP1R1C	rna5160	sense	intergenic	2441	same_strand	upstream	no
1	XLOC_260519	TCONS_00261347	KLF12	rna29616	sense	genic	0	nested	intronic	yes
0	XLOC_260519	TCONS_00261347	KLF12	rna29612	sense	genic	0	nested	intronic	yes
0	XLOC_260519	TCONS_00261347	KLF12	rna29615	sense	genic	0	nested	intronic	yes
0	XLOC_260519	TCONS_00261347	KLF12	rna29617	sense	genic	0	nested	intronic	yes
0	XLOC_260519	TCONS_00261347	KLF12	rna29613	sense	genic	0	nested	intronic	yes
0	XLOC_260519	TCONS_00261347	KLF12	rna29614	sense	genic	0	nested	intronic	yes
0	XLOC_260519	TCONS_00261347	KLF12	rna29618	sense	genic	0	nested	intronic	yes
0	XLOC_260519	TCONS_00261347	KLF12	rna29619	sense	genic	0	nested	intronic	yes
1	XLOC_262843	TCONS_00263678	MOGAT2	rna29746	antisense	intergenic	224	convergent	downstream	no
1	XLOC_195862	TCONS_00196487	SAMD12	rna21991	antisense	genic	0	nested	intronic	yes
1	XLOC_103295	TCONS_00103636	PRKAR1B	rna11858	sense	genic	0	nested	intronic	no
0	XLOC_103295	TCONS_00103636	PRKAR1B	rna11857	sense	genic	0	nested	intronic	no
1	XLOC_151476	TCONS_00151959	FAM69C	rna17025	antisense	intergenic	8683	convergent	downstream	no
1	XLOC_073392	TCONS_00073611	EML4	rna7937	sense	genic	0	nested	intronic	no
0	XLOC_073392	TCONS_00073611	EML4	rna7936	sense	genic	0	nested	intronic	no
0	XLOC_073392	TCONS_00073611	EML4	rna7938	sense	genic	0	nested	intronic	no
0	XLOC_073392	TCONS_00073611	EML4	rna7940	sense	genic	0	nested	intronic	no
0	XLOC_073392	TCONS_00073611	EML4	rna7942	sense	genic	0	nested	intronic	no
0	XLOC_073392	TCONS_00073611	EML4	rna7935	sense	genic	0	nested	intronic	no
0	XLOC_073392	TCONS_00073611	EML4	rna7941	sense	genic	0	nested	intronic	no
0	XLOC_073392	TCONS_00073611	EML4	rna7933	sense	genic	0	nested	intronic	no
0	XLOC_073392	TCONS_00073611	EML4	rna7932	sense	genic	0	nested	intronic	no
0	XLOC_073392	TCONS_00073611	EML4	rna7934	sense	genic	0	nested	intronic	no
0	XLOC_073392	TCONS_00073611	EML4	rna7939	sense	genic	0	nested	intronic	no
1	XLOC_239173	TCONS_00239942	LOC106041101	rna27273	sense	intergenic	3397	same_strand	upstream	no
0	XLOC_239173	TCONS_00239942	AUTS2	rna27274	sense	intergenic	7210	same_strand	downstream	no
1	XLOC_172020	TCONS_00172573	EXD3	rna19258	sense	genic	0	nested	intronic	no
0	XLOC_172020	TCONS_00172573	EXD3	rna19263	sense	genic	0	nested	intronic	no
0	XLOC_172020	TCONS_00172573	EXD3	rna19256	sense	genic	0	nested	intronic	no
0	XLOC_172020	TCONS_00172573	EXD3	rna19255	sense	genic	0	nested	intronic	no
0	XLOC_172020	TCONS_00172573	EXD3	rna19264	sense	genic	0	nested	intronic	no
0	XLOC_172020	TCONS_00172573	EXD3	rna19265	sense	genic	0	nested	intronic	no
0	XLOC_172020	TCONS_00172573	EXD3	rna19267	sense	genic	0	nested	intronic	no
0	XLOC_172020	TCONS_00172573	EXD3	rna19254	sense	genic	0	nested	intronic	no
0	XLOC_172020	TCONS_00172573	EXD3	rna19253	sense	genic	0	nested	intronic	no
0	XLOC_172020	TCONS_00172573	EXD3	rna19266	sense	genic	0	nested	intronic	no
0	XLOC_172020	TCONS_00172573	EXD3	rna19257	sense	genic	0	nested	intronic	no
0	XLOC_172020	TCONS_00172573	EXD3	rna19259	sense	genic	0	nested	intronic	no
0	XLOC_172020	TCONS_00172573	EXD3	rna19261	sense	genic	0	nested	intronic	no
0	XLOC_172020	TCONS_00172573	EXD3	rna19260	sense	genic	0	nested	intronic	no
0	XLOC_172020	TCONS_00172573	EXD3	rna19268	sense	genic	0	nested	intronic	no
0	XLOC_172020	TCONS_00172573	EXD3	rna19262	sense	genic	0	nested	intronic	no
1	XLOC_072213	TCONS_00072428	DUSP10	rna8069	sense	intergenic	13835	same_strand	downstream	no
0	XLOC_072213	TCONS_00072428	DUSP10	rna8068	sense	intergenic	13835	same_strand	downstream	no
1	XLOC_033386	TCONS_00033485	MSRB3	rna3826	sense	intergenic	3284	same_strand	downstream	yes
1	XLOC_128999	TCONS_00129403	CAB39L	rna15091	sense	genic	0	nested	intronic	yes
0	XLOC_128999	TCONS_00129403	CAB39L	rna15089	sense	genic	0	nested	intronic	yes
0	XLOC_128999	TCONS_00129403	CAB39L	rna15086	sense	genic	0	nested	intronic	yes
0	XLOC_128999	TCONS_00129403	CAB39L	rna15092	sense	genic	0	nested	intronic	yes
0	XLOC_128999	TCONS_00129403	CAB39L	rna15084	sense	genic	0	nested	intronic	yes
0	XLOC_128999	TCONS_00129403	CAB39L	rna15093	sense	intergenic	2985	same_strand	upstream	yes
0	XLOC_128999	TCONS_00129403	CAB39L	rna15087	sense	genic	0	nested	intronic	yes
0	XLOC_128999	TCONS_00129403	CAB39L	rna15082	sense	genic	0	nested	intronic	yes
0	XLOC_128999	TCONS_00129403	CAB39L	rna15083	sense	genic	0	nested	intronic	yes
0	XLOC_128999	TCONS_00129403	CAB39L	rna15090	sense	genic	0	nested	intronic	yes
0	XLOC_128999	TCONS_00129403	CAB39L	rna15088	sense	genic	0	nested	intronic	yes
0	XLOC_128999	TCONS_00129403	CAB39L	rna15085	sense	genic	0	nested	intronic	yes
1	XLOC_343719	TCONS_00344828	PBX1	rna39719	sense	intergenic	1659	same_strand	upstream	no
0	XLOC_343719	TCONS_00344828	PBX1	rna39721	sense	intergenic	1665	same_strand	upstream	no
0	XLOC_343719	TCONS_00344828	PBX1	rna39720	sense	intergenic	1659	same_strand	upstream	no
0	XLOC_343719	TCONS_00344828	PBX1	rna39722	sense	intergenic	1665	same_strand	upstream	no
1	XLOC_245632	TCONS_00246416	ATF6	rna28196	sense	genic	0	nested	intronic	no
1	XLOC_154771	TCONS_00155273	LOC106036203	rna17317	sense	intergenic	46344	same_strand	downstream	no
1	XLOC_096792	TCONS_00097094	PPAP2B	rna10758	sense	intergenic	1448	same_strand	downstream	no
0	XLOC_096792	TCONS_00097094	PPAP2B	rna10757	sense	intergenic	1768	same_strand	downstream	no
1	XLOC_182262	TCONS_00182857	LOC106037601	rna20155	sense	intergenic	14232	same_strand	downstream	no
0	XLOC_182262	TCONS_00182857	LOC106037601	rna20157	sense	intergenic	19598	same_strand	downstream	no
0	XLOC_182262	TCONS_00182857	LOC106037601	rna20156	sense	intergenic	17511	same_strand	downstream	no
1	XLOC_172365	TCONS_00172918	LOC106037075	rna19120	sense	intergenic	5299	same_strand	downstream	no
0	XLOC_172365	TCONS_00172918	LOC106037075	rna19121	sense	intergenic	5299	same_strand	downstream	no
1	XLOC_073785	TCONS_00074004	CAPN2	rna8032	sense	intergenic	964	same_strand	upstream	no
0	XLOC_073785	TCONS_00074004	CAPN8	rna8033	antisense	intergenic	1807	divergent	upstream	no
1	XLOC_248139	TCONS_00248934	LOC106041687	rna28451	sense	intergenic	20564	same_strand	upstream	no
1	XLOC_142216	TCONS_00142666	GNAT3	rna16146	sense	intergenic	13672	same_strand	upstream	no
1	XLOC_102529	TCONS_00102861	CHST12	rna11949	sense	intergenic	4828	same_strand	downstream	no
0	XLOC_102529	TCONS_00102861	CHST12	rna11950	sense	intergenic	4828	same_strand	downstream	no
0	XLOC_102529	TCONS_00102861	CHST12	rna11947	sense	intergenic	4828	same_strand	downstream	no
0	XLOC_102529	TCONS_00102861	CHST12	rna11951	sense	intergenic	4828	same_strand	downstream	no
1	XLOC_225708	TCONS_00226417	SLC25A36	rna25648	antisense	intergenic	10932	divergent	upstream	no
1	XLOC_204850	TCONS_00205511	LOC106038967	rna22945	sense	intergenic	12199	same_strand	downstream	no
1	XLOC_150080	TCONS_00150560	LOC106035977	rna16988	sense	intergenic	22250	same_strand	downstream	no
0	XLOC_150080	TCONS_00150560	MBP	rna16989	sense	intergenic	22945	same_strand	upstream	no
1	XLOC_008728	TCONS_00008754	STK32B	rna1427	antisense	genic	0	nested	intronic	no
0	XLOC_008728	TCONS_00008754	STK32B	rna1426	antisense	genic	0	nested	intronic	no
0	XLOC_008728	TCONS_00008754	STK32B	rna1430	antisense	genic	0	nested	intronic	no
0	XLOC_008728	TCONS_00008754	STK32B	rna1429	antisense	genic	0	nested	intronic	no
0	XLOC_008728	TCONS_00008754	STK32B	rna1425	antisense	genic	0	nested	intronic	no
0	XLOC_008728	TCONS_00008754	STK32B	rna1428	antisense	genic	0	nested	intronic	no
1	XLOC_053022	TCONS_00053185	BEND6	rna5912	sense	intergenic	16687	same_strand	upstream	no
0	XLOC_053022	TCONS_00053185	BEND6	rna5911	sense	intergenic	16687	same_strand	upstream	no
0	XLOC_053022	TCONS_00053185	BEND6	rna5910	sense	intergenic	16687	same_strand	upstream	no
0	XLOC_053022	TCONS_00053185	BEND6	rna5914	sense	intergenic	16687	same_strand	upstream	no
0	XLOC_053022	TCONS_00053185	BEND6	rna5913	sense	intergenic	16687	same_strand	upstream	no
1	XLOC_275673	TCONS_00276554	LOC106043152	rna31255	antisense	genic	0	nested	intronic	no
1	XLOC_272788	TCONS_00273661	CYSLTR1	rna30874	antisense	genic	0	nested	intronic	no
0	XLOC_272788	TCONS_00273661	CYSLTR1	rna30875	antisense	intergenic	1397	divergent	upstream	no
0	XLOC_272788	TCONS_00273661	LOC106042984	rna30876	sense	intergenic	9376	same_strand	upstream	yes
1	XLOC_358524	TCONS_00359701	ILF3	rna42955	antisense	intergenic	4946	divergent	upstream	no
1	XLOC_204850	TCONS_00205510	LOC106038967	rna22945	sense	intergenic	12199	same_strand	downstream	no
1	XLOC_234442	TCONS_00235186	LOC106040847	rna26797	antisense	intergenic	1046	convergent	downstream	no
0	XLOC_234442	TCONS_00235186	TAF4	rna26798	antisense	intergenic	2893	divergent	upstream	no
1	XLOC_188519	TCONS_00189122	LOC106038117	rna21276	antisense	intergenic	26692	divergent	upstream	yes
1	XLOC_238718	TCONS_00239481	AUTS2	rna27274	antisense	genic	0	nested	intronic	no
1	XLOC_326667	TCONS_00327705	UHRF2	rna37181	sense	genic	0	nested	intronic	no
1	XLOC_358444	TCONS_00359621	VCPKMT	rna42904	antisense	intergenic	5695	convergent	downstream	yes
1	XLOC_228675	TCONS_00229394	KCMF1	rna25984	antisense	intergenic	5451	divergent	upstream	no
0	XLOC_228675	TCONS_00229394	FNTA	rna25983	antisense	intergenic	6505	convergent	downstream	no
1	XLOC_283068	TCONS_00283972	NEGR1	rna32074	sense	intergenic	5410	same_strand	downstream	no
1	XLOC_333370	TCONS_00334437	MYO1D	rna38172	sense	intergenic	20914	same_strand	upstream	no
1	XLOC_011821	TCONS_00011852	CD8A	rna1154	antisense	intergenic	2430	divergent	upstream	yes
0	XLOC_011821	TCONS_00011852	LOC106033965	rna1153	antisense	intergenic	9347	convergent	downstream	no
1	XLOC_045113	TCONS_00045257	HOXA11	rna5483	antisense	intergenic	549	divergent	upstream	no
1	XLOC_279862	TCONS_00280755	AZI2	rna31581	antisense	intergenic	66196	divergent	upstream	yes
0	XLOC_279862	TCONS_00280755	AZI2	rna31583	antisense	intergenic	67331	divergent	upstream	yes
0	XLOC_279862	TCONS_00280755	AZI2	rna31582	antisense	intergenic	66297	divergent	upstream	yes
1	XLOC_027589	TCONS_00027677	PHF21A	rna3140	sense	genic	0	nested	intronic	no
0	XLOC_027589	TCONS_00027677	PHF21A	rna3137	sense	genic	0	nested	intronic	no
0	XLOC_027589	TCONS_00027677	PHF21A	rna3141	sense	intergenic	3532	same_strand	upstream	no
0	XLOC_027589	TCONS_00027677	PHF21A	rna3134	sense	genic	0	nested	intronic	no
0	XLOC_027589	TCONS_00027677	PHF21A	rna3138	sense	genic	0	nested	intronic	no
0	XLOC_027589	TCONS_00027677	PHF21A	rna3136	sense	genic	0	nested	intronic	no
0	XLOC_027589	TCONS_00027677	PHF21A	rna3135	sense	genic	0	nested	intronic	no
0	XLOC_027589	TCONS_00027677	PHF21A	rna3139	sense	genic	0	nested	intronic	no
1	XLOC_209548	TCONS_00210222	LOC106039257	rna23322	antisense	intergenic	13127	divergent	upstream	no
1	XLOC_344095	TCONS_00345206	DIO3	rna39742	antisense	intergenic	19114	divergent	upstream	no
1	XLOC_101662	TCONS_00101989	CREBBP	rna11466	sense	genic	0	nested	intronic	no
0	XLOC_101662	TCONS_00101989	CREBBP	rna11465	sense	genic	0	nested	intronic	no
0	XLOC_101662	TCONS_00101989	CREBBP	rna11467	sense	genic	0	nested	intronic	no
0	XLOC_101662	TCONS_00101989	CREBBP	rna11468	sense	genic	0	nested	intronic	no
1	XLOC_319037	TCONS_00320058	LOC106045902	rna36354	antisense	intergenic	61071	convergent	downstream	no
1	XLOC_304045	TCONS_00305025	LOC106044795	rna34383	antisense	intergenic	1675	convergent	downstream	no
1	XLOC_196858	TCONS_00197484	ABCB7	rna22038	sense	intergenic	3463	same_strand	downstream	no
1	XLOC_319265	TCONS_00320287	LOC106045900	rna36352	antisense	intergenic	28614	convergent	downstream	no
1	XLOC_341819	TCONS_00342920	WASL	rna39421	antisense	intergenic	5525	divergent	upstream	no
1	XLOC_084868	TCONS_00085129	LOC106032300	rna9568	sense	intergenic	4685	same_strand	downstream	no
1	XLOC_276704	TCONS_00277593	LOC106043230	rna31385	sense	intergenic	6160	same_strand	upstream	no
1	XLOC_306274	TCONS_00307256	AP1M1	rna34617	sense	intergenic	5147	same_strand	downstream	no
1	XLOC_343753	TCONS_00344863	ZNF648	rna39698	sense	intergenic	4799	same_strand	downstream	no
1	XLOC_205809	TCONS_00206477	RP1	rna22981	sense	intergenic	29146	same_strand	upstream	no
1	XLOC_139207	TCONS_00139645	FAM19A1	rna15990	sense	genic	0	nested	intronic	no
0	XLOC_139207	TCONS_00139645	FAM19A1	rna15989	sense	genic	0	nested	intronic	no
0	XLOC_139207	TCONS_00139645	FAM19A1	rna15985	sense	genic	0	nested	intronic	no
0	XLOC_139207	TCONS_00139645	FAM19A1	rna15987	sense	genic	0	nested	intronic	no
0	XLOC_139207	TCONS_00139645	FAM19A1	rna15984	sense	genic	0	nested	intronic	no
0	XLOC_139207	TCONS_00139645	FAM19A1	rna15986	sense	genic	0	nested	intronic	no
0	XLOC_139207	TCONS_00139645	FAM19A1	rna15988	sense	genic	0	nested	intronic	no
0	XLOC_139207	TCONS_00139645	FAM19A1	rna15991	sense	genic	0	nested	intronic	no
1	XLOC_335778	TCONS_00336853	LOC106047332	rna38842	sense	intergenic	47862	same_strand	downstream	no
0	XLOC_335778	TCONS_00336853	LOC106047332	rna38843	sense	intergenic	47862	same_strand	downstream	no
1	XLOC_036312	TCONS_00036422	CRIM1	rna4326	sense	genic	0	nested	intronic	yes
1	XLOC_170795	TCONS_00171345	LOC106036995	rna19031	antisense	intergenic	92734	divergent	upstream	no
1	XLOC_027869	TCONS_00027957	CD82	rna3291	sense	intergenic	1183	same_strand	downstream	no
0	XLOC_027869	TCONS_00027957	TSPAN18	rna3279	sense	intergenic	4339	same_strand	upstream	no
0	XLOC_027869	TCONS_00027957	CD82	rna3292	sense	intergenic	1183	same_strand	downstream	no
0	XLOC_027869	TCONS_00027957	TSPAN18	rna3280	sense	intergenic	4339	same_strand	upstream	no
1	XLOC_256521	TCONS_00257341	BCOR	rna29297	sense	intergenic	8775	same_strand	downstream	yes
0	XLOC_256521	TCONS_00257341	BCOR	rna29296	sense	intergenic	8775	same_strand	downstream	yes
0	XLOC_256521	TCONS_00257341	BCOR	rna29295	sense	intergenic	8775	same_strand	downstream	yes
0	XLOC_256521	TCONS_00257341	BCOR	rna29298	sense	intergenic	8775	same_strand	downstream	yes
0	XLOC_256521	TCONS_00257341	BCOR	rna29299	sense	intergenic	8775	same_strand	downstream	yes
1	XLOC_194858	TCONS_00195480	SAMD12	rna21991	sense	intergenic	17509	same_strand	upstream	yes
1	XLOC_054393	TCONS_00054559	LOC106030527	rna6099	antisense	intergenic	1869	convergent	downstream	no
0	XLOC_054393	TCONS_00054559	LOC106030528	rna6102	sense	intergenic	8332	same_strand	upstream	no
0	XLOC_054393	TCONS_00054559	TMEM55A	rna6098	sense	intergenic	2949	same_strand	downstream	no
0	XLOC_054393	TCONS_00054559	LOC106030527	rna6100	antisense	intergenic	4980	convergent	downstream	no
0	XLOC_054393	TCONS_00054559	LOC106030527	rna6101	antisense	intergenic	5981	convergent	downstream	no
0	XLOC_054393	TCONS_00054559	LOC106030528	rna6103	sense	intergenic	8332	same_strand	upstream	no
1	XLOC_213846	TCONS_00214537	LOC106039529	rna24118	sense	genic	0	nested	intronic	no
0	XLOC_213846	TCONS_00214537	LOC106039529	rna24114	sense	genic	0	nested	intronic	no
0	XLOC_213846	TCONS_00214537	LOC106039529	rna24111	sense	genic	0	nested	intronic	no
0	XLOC_213846	TCONS_00214537	LOC106039529	rna24115	sense	genic	0	nested	intronic	no
0	XLOC_213846	TCONS_00214537	LOC106039529	rna24112	sense	genic	0	nested	intronic	no
0	XLOC_213846	TCONS_00214537	LOC106039529	rna24113	sense	genic	0	nested	intronic	no
0	XLOC_213846	TCONS_00214537	LOC106039529	rna24117	sense	genic	0	nested	intronic	no
0	XLOC_213846	TCONS_00214537	LOC106039529	rna24116	sense	genic	0	nested	intronic	no
1	XLOC_302085	TCONS_00303049	TDRD15	rna34138	sense	intergenic	1374	same_strand	downstream	no
1	XLOC_001840	TCONS_00001845	JMJD1C	rna719	sense	intergenic	10677	same_strand	upstream	yes
1	XLOC_269531	TCONS_00270390	MSX2	rna30496	sense	intergenic	92825	same_strand	downstream	no
1	XLOC_323834	TCONS_00324862	LOC106046257	rna36946	sense	intergenic	6441	same_strand	downstream	no
0	XLOC_323834	TCONS_00324862	LOC106046257	rna36949	sense	intergenic	6441	same_strand	downstream	no
0	XLOC_323834	TCONS_00324862	LOC106046257	rna36948	sense	intergenic	6441	same_strand	downstream	no
0	XLOC_323834	TCONS_00324862	LOC106046257	rna36947	sense	intergenic	6441	same_strand	downstream	no
1	XLOC_233709	TCONS_00234447	TNFRSF6B	rna26678	sense	genic	0	nested	intronic	yes
0	XLOC_233709	TCONS_00234447	RTEL1	rna26677	sense	intergenic	3270	same_strand	downstream	no
1	XLOC_085212	TCONS_00085475	CPE	rna9622	sense	intergenic	991	same_strand	downstream	yes
0	XLOC_085212	TCONS_00085475	CPE	rna9621	sense	intergenic	992	same_strand	downstream	yes
0	XLOC_085212	TCONS_00085475	CPE	rna9624	sense	intergenic	991	same_strand	downstream	yes
0	XLOC_085212	TCONS_00085475	CPE	rna9623	sense	intergenic	991	same_strand	downstream	yes
1	XLOC_078400	TCONS_00078630	FARP1	rna8536	sense	genic	0	nested	intronic	yes
0	XLOC_078400	TCONS_00078630	FARP1	rna8537	sense	genic	0	nested	intronic	yes
0	XLOC_078400	TCONS_00078630	FARP1	rna8538	sense	genic	0	nested	intronic	yes
0	XLOC_078400	TCONS_00078630	FARP1	rna8540	sense	genic	0	nested	intronic	yes
0	XLOC_078400	TCONS_00078630	FARP1	rna8539	sense	genic	0	nested	intronic	yes
0	XLOC_078400	TCONS_00078630	FARP1	rna8541	sense	genic	0	nested	intronic	yes
1	XLOC_221915	TCONS_00222615	LOC106039976	rna25091	sense	intergenic	7707	same_strand	upstream	no
1	XLOC_066523	TCONS_00066722	PLEKHA5	rna6761	sense	genic	0	nested	intronic	no
0	XLOC_066523	TCONS_00066722	PLEKHA5	rna6763	sense	genic	0	nested	intronic	no
0	XLOC_066523	TCONS_00066722	PLEKHA5	rna6760	sense	genic	0	nested	intronic	no
0	XLOC_066523	TCONS_00066722	PLEKHA5	rna6757	sense	genic	0	nested	intronic	no
0	XLOC_066523	TCONS_00066722	PLEKHA5	rna6762	sense	genic	0	nested	intronic	no
0	XLOC_066523	TCONS_00066722	PLEKHA5	rna6759	sense	genic	0	nested	intronic	no
0	XLOC_066523	TCONS_00066722	PLEKHA5	rna6758	sense	genic	0	nested	intronic	no
1	XLOC_252199	TCONS_00253003	RASSF6	rna28924	sense	genic	0	nested	intronic	no
0	XLOC_252199	TCONS_00253003	RASSF6	rna28928	sense	intergenic	7042	same_strand	upstream	no
0	XLOC_252199	TCONS_00253003	LOC106041921	rna28926	antisense	intergenic	6140	convergent	downstream	no
0	XLOC_252199	TCONS_00253003	LOC106041915	rna28925	antisense	intergenic	1736	divergent	upstream	no
0	XLOC_252199	TCONS_00253003	RASSF6	rna28927	sense	intergenic	7024	same_strand	upstream	no
1	XLOC_225863	TCONS_00226573	FOXL2	rna25681	antisense	intergenic	27543	divergent	upstream	no
1	XLOC_358536	TCONS_00359714	MGAT1	rna42974	sense	intergenic	1220	same_strand	downstream	no
0	XLOC_358536	TCONS_00359714	LOC106029347	rna42972	antisense	intergenic	8279	convergent	downstream	no
0	XLOC_358536	TCONS_00359714	LOC106029347	rna42973	antisense	intergenic	8279	convergent	downstream	no
1	XLOC_331943	TCONS_00332996	NTN1	rna37804	sense	intergenic	539	same_strand	downstream	no
0	XLOC_331943	TCONS_00332996	STX8	rna37806	antisense	intergenic	5117	convergent	downstream	no
1	XLOC_300605	TCONS_00301566	LOC106044563	rna33965	sense	genic	0	nested	intronic	no
0	XLOC_300605	TCONS_00301566	TRIM67	rna33966	antisense	intergenic	7182	convergent	downstream	yes
0	XLOC_300605	TCONS_00301566	TRIM67	rna33967	antisense	intergenic	7182	convergent	downstream	yes
0	XLOC_300605	TCONS_00301566	GNPAT	rna33964	antisense	intergenic	6956	divergent	upstream	no
0	XLOC_300605	TCONS_00301566	TRIM67	rna33968	antisense	intergenic	7182	convergent	downstream	yes
1	XLOC_247789	TCONS_00248580	LOC106041719	rna28478	antisense	intergenic	2705	divergent	upstream	no
1	XLOC_128076	TCONS_00128474	LOC106034941	rna14902	sense	intergenic	101	same_strand	upstream	no
0	XLOC_128076	TCONS_00128474	IMPA2	rna14903	antisense	intergenic	7229	divergent	upstream	no
1	XLOC_189044	TCONS_00189648	ARNTL2	rna21406	sense	intergenic	4691	same_strand	downstream	no
0	XLOC_189044	TCONS_00189648	ARNTL2	rna21405	sense	intergenic	4691	same_strand	downstream	no
0	XLOC_189044	TCONS_00189648	ARNTL2	rna21400	sense	intergenic	4691	same_strand	downstream	no
0	XLOC_189044	TCONS_00189648	ARNTL2	rna21401	sense	intergenic	4691	same_strand	downstream	no
0	XLOC_189044	TCONS_00189648	ARNTL2	rna21399	sense	intergenic	4691	same_strand	downstream	no
0	XLOC_189044	TCONS_00189648	ARNTL2	rna21404	sense	intergenic	4691	same_strand	downstream	no
0	XLOC_189044	TCONS_00189648	ARNTL2	rna21403	sense	intergenic	4691	same_strand	downstream	no
0	XLOC_189044	TCONS_00189648	ARNTL2	rna21402	sense	intergenic	4691	same_strand	downstream	no
1	XLOC_281403	TCONS_00282301	PTPRT	rna31797	sense	intergenic	32758	same_strand	upstream	no
0	XLOC_281403	TCONS_00282301	PTPRT	rna31800	sense	intergenic	32758	same_strand	upstream	no
0	XLOC_281403	TCONS_00282301	PTPRT	rna31799	sense	intergenic	32758	same_strand	upstream	no
0	XLOC_281403	TCONS_00282301	PTPRT	rna31796	sense	intergenic	32758	same_strand	upstream	no
0	XLOC_281403	TCONS_00282301	PTPRT	rna31798	sense	intergenic	32758	same_strand	upstream	no
1	XLOC_332496	TCONS_00333553	PTH1R	rna37982	antisense	intergenic	2184	divergent	upstream	no
0	XLOC_332496	TCONS_00333553	PTH1R	rna37983	antisense	intergenic	2695	divergent	upstream	no
1	XLOC_326503	TCONS_00327540	RCL1	rna37208	antisense	intergenic	15021	convergent	downstream	no
1	XLOC_097066	TCONS_00097372	LOC106033023	rna10872	antisense	intergenic	5472	divergent	upstream	no
0	XLOC_097066	TCONS_00097372	LOC106033023	rna10873	antisense	intergenic	5472	divergent	upstream	no
1	XLOC_298622	TCONS_00299576	EVA1A	rna33823	antisense	intergenic	8850	convergent	downstream	no
0	XLOC_298622	TCONS_00299576	EVA1A	rna33819	antisense	intergenic	8850	convergent	downstream	no
0	XLOC_298622	TCONS_00299576	EVA1A	rna33818	antisense	intergenic	8850	convergent	downstream	no
0	XLOC_298622	TCONS_00299576	EVA1A	rna33824	antisense	intergenic	8850	convergent	downstream	no
0	XLOC_298622	TCONS_00299576	EVA1A	rna33822	antisense	intergenic	8850	convergent	downstream	no
0	XLOC_298622	TCONS_00299576	EVA1A	rna33820	antisense	intergenic	8850	convergent	downstream	no
1	XLOC_233130	TCONS_00233864	MVB12B	rna26623	sense	intergenic	18254	same_strand	upstream	no
0	XLOC_233130	TCONS_00233864	MVB12B	rna26624	sense	intergenic	18254	same_strand	upstream	no
1	XLOC_162853	TCONS_00163379	BMP2	rna18279	sense	intergenic	12362	same_strand	upstream	no
1	XLOC_292877	TCONS_00293806	DBH	rna33157	sense	intergenic	6555	same_strand	upstream	no
1	XLOC_160752	TCONS_00161273	NSUN2	rna18060	sense	intergenic	3793	same_strand	downstream	no
1	XLOC_282398	TCONS_00283298	LOC106043565	rna32011	antisense	genic	0	nested	intronic	no
0	XLOC_282398	TCONS_00283298	LOC106043565	rna32009	antisense	genic	0	nested	intronic	no
0	XLOC_282398	TCONS_00283298	LOC106043565	rna32010	antisense	genic	0	nested	intronic	no
1	XLOC_351549	TCONS_00352687	LOC106048631	rna41079	antisense	intergenic	2751	divergent	upstream	no
0	XLOC_351549	TCONS_00352687	TRIM62	rna41078	sense	intergenic	7496	same_strand	upstream	no
0	XLOC_351549	TCONS_00352687	TRIM62	rna41076	sense	intergenic	7496	same_strand	upstream	no
0	XLOC_351549	TCONS_00352687	TRIM62	rna41077	sense	intergenic	7496	same_strand	upstream	no
1	XLOC_224919	TCONS_00225622	SPINK4	rna25627	sense	intergenic	5148	same_strand	upstream	no
1	XLOC_356258	TCONS_00357428	ATL1	rna42028	antisense	intergenic	3050	divergent	upstream	no
0	XLOC_356258	TCONS_00357428	MAP4K5	rna42030	sense	intergenic	6222	same_strand	upstream	no
0	XLOC_356258	TCONS_00357428	MAP4K5	rna42031	sense	intergenic	6222	same_strand	upstream	no
0	XLOC_356258	TCONS_00357428	MAP4K5	rna42029	sense	intergenic	6222	same_strand	upstream	no
0	XLOC_356258	TCONS_00357428	MAP4K5	rna42033	sense	intergenic	6265	same_strand	upstream	no
0	XLOC_356258	TCONS_00357428	MAP4K5	rna42032	sense	intergenic	6222	same_strand	upstream	no
1	XLOC_123043	TCONS_00123430	TNRC6C	rna14623	sense	genic	0	nested	intronic	no
1	XLOC_165887	TCONS_00166422	LOC106036821	rna18768	sense	intergenic	66690	same_strand	downstream	no
1	XLOC_346947	TCONS_00348067	CDS1	rna40331	sense	intergenic	44591	same_strand	upstream	yes
0	XLOC_346947	TCONS_00348067	CDS1	rna40333	sense	intergenic	48489	same_strand	upstream	yes
0	XLOC_346947	TCONS_00348067	CDS1	rna40332	sense	intergenic	44591	same_strand	upstream	yes
1	XLOC_257068	TCONS_00257891	TSPAN7	rna29310	sense	intergenic	28937	same_strand	downstream	no
0	XLOC_257068	TCONS_00257891	TSPAN7	rna29309	sense	intergenic	28937	same_strand	downstream	no
1	XLOC_262621	TCONS_00263456	WNT11	rna29752	antisense	intergenic	5319	divergent	upstream	no
1	XLOC_113899	TCONS_00114266	SASH1	rna13249	sense	intergenic	15079	same_strand	downstream	no
0	XLOC_113899	TCONS_00114266	SASH1	rna13244	sense	intergenic	15079	same_strand	downstream	no
0	XLOC_113899	TCONS_00114266	SASH1	rna13251	sense	intergenic	15079	same_strand	downstream	no
0	XLOC_113899	TCONS_00114266	SASH1	rna13242	sense	intergenic	15079	same_strand	downstream	no
0	XLOC_113899	TCONS_00114266	SASH1	rna13245	sense	intergenic	15079	same_strand	downstream	no
0	XLOC_113899	TCONS_00114266	SASH1	rna13246	sense	intergenic	15079	same_strand	downstream	no
0	XLOC_113899	TCONS_00114266	SASH1	rna13248	sense	intergenic	15079	same_strand	downstream	no
0	XLOC_113899	TCONS_00114266	SASH1	rna13250	sense	intergenic	15079	same_strand	downstream	no
0	XLOC_113899	TCONS_00114266	SASH1	rna13243	sense	intergenic	15079	same_strand	downstream	no
0	XLOC_113899	TCONS_00114266	SASH1	rna13247	sense	intergenic	15079	same_strand	downstream	no
1	XLOC_213575	TCONS_00214265	LOC106039500	rna24165	sense	intergenic	20861	same_strand	downstream	no
1	XLOC_258451	TCONS_00259276	CCDC102B	rna29403	sense	genic	0	nested	intronic	no
0	XLOC_258451	TCONS_00259276	CCDC102B	rna29411	sense	genic	0	nested	intronic	no
0	XLOC_258451	TCONS_00259276	CCDC102B	rna29409	sense	genic	0	nested	intronic	no
0	XLOC_258451	TCONS_00259276	CCDC102B	rna29410	sense	genic	0	nested	intronic	no
0	XLOC_258451	TCONS_00259276	CCDC102B	rna29402	sense	genic	0	nested	intronic	no
1	XLOC_306186	TCONS_00307168	CHAF1A	rna34683	antisense	intergenic	1756	divergent	upstream	no
1	XLOC_244870	TCONS_00245654	CCDC59	rna28122	sense	intergenic	132	same_strand	downstream	no
0	XLOC_244870	TCONS_00245654	METTL25	rna28123	antisense	intergenic	9316	divergent	upstream	no
1	XLOC_326612	TCONS_00327649	KDM4C	rna37167	sense	intergenic	24490	same_strand	downstream	no
0	XLOC_326612	TCONS_00327649	KDM4C	rna37169	sense	intergenic	26308	same_strand	downstream	no
0	XLOC_326612	TCONS_00327649	KDM4C	rna37168	sense	intergenic	26308	same_strand	downstream	no
0	XLOC_326612	TCONS_00327649	KDM4C	rna37170	sense	intergenic	26308	same_strand	downstream	no
1	XLOC_128075	TCONS_00128472	LOC106034941	rna14902	sense	genic	0	nested	intronic	no
0	XLOC_128075	TCONS_00128472	MPPE1	rna14901	sense	intergenic	9400	same_strand	upstream	no
1	XLOC_232887	TCONS_00233613	NACC2	rna26511	sense	intergenic	117	same_strand	downstream	no
1	XLOC_350319	TCONS_00351450	ALX3	rna40731	antisense	intergenic	4373	divergent	upstream	no
1	XLOC_040191	TCONS_00040327	SLC15A2	rna4622	sense	intergenic	76	same_strand	downstream	no
0	XLOC_040191	TCONS_00040327	DIRC2	rna4623	sense	intergenic	9061	same_strand	upstream	no
0	XLOC_040191	TCONS_00040327	SLC15A2	rna4621	sense	intergenic	76	same_strand	downstream	no
0	XLOC_040191	TCONS_00040327	SLC15A2	rna4620	sense	intergenic	76	same_strand	downstream	no
1	XLOC_079569	TCONS_00079809	VTI1A	rna8743	sense	intergenic	26344	same_strand	downstream	no
1	XLOC_172020	TCONS_00172571	EXD3	rna19258	sense	genic	0	nested	intronic	no
0	XLOC_172020	TCONS_00172571	EXD3	rna19263	sense	genic	0	nested	intronic	no
0	XLOC_172020	TCONS_00172571	EXD3	rna19256	sense	genic	0	nested	intronic	no
0	XLOC_172020	TCONS_00172571	EXD3	rna19255	sense	genic	0	nested	intronic	no
0	XLOC_172020	TCONS_00172571	EXD3	rna19264	sense	genic	0	nested	intronic	no
0	XLOC_172020	TCONS_00172571	EXD3	rna19265	sense	genic	0	nested	intronic	no
0	XLOC_172020	TCONS_00172571	EXD3	rna19267	sense	genic	0	nested	intronic	no
0	XLOC_172020	TCONS_00172571	EXD3	rna19254	sense	genic	0	nested	intronic	no
0	XLOC_172020	TCONS_00172571	EXD3	rna19253	sense	genic	0	nested	intronic	no
0	XLOC_172020	TCONS_00172571	EXD3	rna19266	sense	genic	0	nested	intronic	no
0	XLOC_172020	TCONS_00172571	EXD3	rna19257	sense	genic	0	nested	intronic	no
0	XLOC_172020	TCONS_00172571	EXD3	rna19259	sense	genic	0	nested	intronic	no
0	XLOC_172020	TCONS_00172571	EXD3	rna19261	sense	genic	0	nested	intronic	no
0	XLOC_172020	TCONS_00172571	EXD3	rna19260	sense	genic	0	nested	intronic	no
0	XLOC_172020	TCONS_00172571	EXD3	rna19268	sense	genic	0	nested	intronic	no
0	XLOC_172020	TCONS_00172571	EXD3	rna19262	sense	genic	0	nested	intronic	no
1	XLOC_111256	TCONS_00111618	ARHGAP42	rna13106	antisense	genic	0	nested	intronic	no
1	XLOC_127438	TCONS_00127832	EMILIN2	rna14769	antisense	intergenic	3571	divergent	upstream	no
0	XLOC_127438	TCONS_00127832	EMILIN2	rna14770	antisense	intergenic	3571	divergent	upstream	no
1	XLOC_260380	TCONS_00261208	LOC106042315	rna29610	sense	intergenic	4937	same_strand	downstream	no
0	XLOC_260380	TCONS_00261208	LOC106042315	rna29609	sense	intergenic	4937	same_strand	downstream	no
0	XLOC_260380	TCONS_00261208	LOC106042313	rna29611	sense	intergenic	5700	same_strand	upstream	no
1	XLOC_270525	TCONS_00271394	RFT1	rna30584	sense	genic	0	nested	intronic	no
0	XLOC_270525	TCONS_00271394	RFT1	rna30585	sense	genic	0	nested	intronic	no
1	XLOC_217662	TCONS_00218358	RBM7	rna24727	antisense	intergenic	753	divergent	upstream	no
0	XLOC_217662	TCONS_00218358	REXO2	rna24726	antisense	intergenic	4518	divergent	upstream	no
0	XLOC_217662	TCONS_00218358	ZBTB16	rna24728	sense	intergenic	2823	same_strand	upstream	no
1	XLOC_246403	TCONS_00247190	LOC106041660	rna28365	antisense	intergenic	9749	divergent	upstream	no
1	XLOC_108406	TCONS_00108764	GIPC2	rna12842	sense	intergenic	4442	same_strand	downstream	yes
0	XLOC_108406	TCONS_00108764	GIPC2	rna12841	sense	intergenic	4442	same_strand	downstream	yes
1	XLOC_337086	TCONS_00338169	LOC106047362	rna38954	sense	intergenic	43687	same_strand	downstream	no
0	XLOC_337086	TCONS_00338169	LOC106047362	rna38956	sense	intergenic	43696	same_strand	downstream	no
0	XLOC_337086	TCONS_00338169	LOC106047363	rna38957	antisense	intergenic	48303	divergent	upstream	no
0	XLOC_337086	TCONS_00338169	LOC106047362	rna38955	sense	intergenic	43689	same_strand	downstream	no
0	XLOC_337086	TCONS_00338169	LOC106047363	rna38958	antisense	intergenic	48352	divergent	upstream	no
1	XLOC_189488	TCONS_00190093	ATXN10	rna21519	sense	intergenic	12555	same_strand	downstream	no
0	XLOC_189488	TCONS_00190093	ATXN10	rna21517	sense	intergenic	12555	same_strand	downstream	no
1	XLOC_340067	TCONS_00341165	LOC106047499	rna39181	sense	genic	0	nested	intronic	no
0	XLOC_340067	TCONS_00341165	LOC106047500	rna39180	antisense	intergenic	8379	convergent	downstream	no
0	XLOC_340067	TCONS_00341165	ASB12	rna39182	sense	intergenic	1884	same_strand	upstream	no
0	XLOC_340067	TCONS_00341165	MTMR8	rna39183	sense	intergenic	5915	same_strand	downstream	no
1	XLOC_172942	TCONS_00173498	LOC106037284	rna19331	antisense	intergenic	25045	convergent	downstream	no
0	XLOC_172942	TCONS_00173498	LOC106037284	rna19333	antisense	intergenic	25045	convergent	downstream	no
0	XLOC_172942	TCONS_00173498	LOC106037284	rna19332	antisense	intergenic	25045	convergent	downstream	no
1	XLOC_122634	TCONS_00123020	MMD	rna14344	antisense	genic	0	nested	intronic	no
0	XLOC_122634	TCONS_00123020	MMD	rna14345	antisense	genic	0	nested	intronic	no
1	XLOC_312795	TCONS_00313797	PPA2	rna35291	antisense	intergenic	2314	divergent	upstream	no
0	XLOC_312795	TCONS_00313797	ARHGEF38	rna35292	sense	intergenic	7392	same_strand	upstream	no
1	XLOC_007088	TCONS_00007105	LOC106032994	rna1065	antisense	intergenic	17571	convergent	downstream	no
1	XLOC_196777	TCONS_00197402	LOC106038554	rna22003	antisense	intergenic	20545	convergent	downstream	no
0	XLOC_196777	TCONS_00197402	LOC106038554	rna22002	antisense	intergenic	20545	convergent	downstream	no
0	XLOC_196777	TCONS_00197402	LOC106038554	rna22004	antisense	intergenic	20545	convergent	downstream	no
1	XLOC_110477	TCONS_00110839	LOC106034071	rna12986	antisense	intergenic	2875	convergent	downstream	no
0	XLOC_110477	TCONS_00110839	LRRC8B	rna12987	antisense	intergenic	9558	divergent	upstream	no
1	XLOC_218144	TCONS_00218842	LOC106039848	rna24725	antisense	genic	0	nested	intronic	no
1	XLOC_356844	TCONS_00358015	USP4	rna42315	sense	genic	0	nested	intronic	no
1	XLOC_091110	TCONS_00091398	CDK19	rna10005	sense	intergenic	3734	same_strand	downstream	no
1	XLOC_166492	TCONS_00167028	FAM188B	rna18699	sense	intergenic	11900	same_strand	downstream	no
1	XLOC_228633	TCONS_00229351	NRG1	rna25977	antisense	genic	0	nested	intronic	no
0	XLOC_228633	TCONS_00229351	NRG1	rna25975	antisense	genic	0	nested	intronic	no
0	XLOC_228633	TCONS_00229351	NRG1	rna25979	antisense	genic	0	nested	intronic	no
0	XLOC_228633	TCONS_00229351	NRG1	rna25981	antisense	genic	0	nested	intronic	no
0	XLOC_228633	TCONS_00229351	NRG1	rna25978	antisense	genic	0	nested	intronic	no
0	XLOC_228633	TCONS_00229351	NRG1	rna25980	antisense	genic	0	nested	intronic	no
0	XLOC_228633	TCONS_00229351	NRG1	rna25976	antisense	genic	0	nested	intronic	no
0	XLOC_228633	TCONS_00229351	NRG1	rna25974	antisense	genic	0	nested	intronic	no
1	XLOC_029154	TCONS_00029246	ATF7IP	rna3565	sense	genic	0	nested	intronic	no
0	XLOC_029154	TCONS_00029246	ATF7IP	rna3564	sense	genic	0	nested	intronic	no
1	XLOC_287492	TCONS_00288406	LOC106043756	rna32436	sense	intergenic	364	same_strand	downstream	no
1	XLOC_268405	TCONS_00269261	XRCC4	rna30403	antisense	intergenic	7325	divergent	upstream	no
0	XLOC_268405	TCONS_00269261	TMEM167A	rna30405	sense	intergenic	7466	same_strand	upstream	no
1	XLOC_351167	TCONS_00352303	CNTFR	rna41015	sense	intergenic	71824	same_strand	upstream	no
0	XLOC_351167	TCONS_00352303	CNTFR	rna41016	sense	intergenic	73664	same_strand	upstream	no
1	XLOC_246321	TCONS_00247108	LOC106041636	rna28354	antisense	intergenic	402	divergent	upstream	no
1	XLOC_017369	TCONS_00017432	LOC106039194	rna2262	sense	intergenic	15306	same_strand	upstream	yes
1	XLOC_143302	TCONS_00143755	ANKRD55	rna16260	antisense	intergenic	13904	divergent	upstream	no
0	XLOC_143302	TCONS_00143755	ANKRD55	rna16259	antisense	intergenic	13904	divergent	upstream	no
1	XLOC_342514	TCONS_00343618	TSC22D2	rna39522	sense	intergenic	1926	same_strand	downstream	no
0	XLOC_342514	TCONS_00343618	EIF2A	rna39520	sense	intergenic	5724	same_strand	upstream	no
0	XLOC_342514	TCONS_00343618	EIF2A	rna39521	sense	intergenic	5725	same_strand	upstream	no
0	XLOC_342514	TCONS_00343618	TSC22D2	rna39523	sense	intergenic	1928	same_strand	downstream	no
0	XLOC_342514	TCONS_00343618	TSC22D2	rna39524	sense	intergenic	3350	same_strand	downstream	no
1	XLOC_302088	TCONS_00303053	TDRD15	rna34138	sense	intergenic	13814	same_strand	upstream	no
1	XLOC_086788	TCONS_00087056	MARCH1	rna9601	sense	genic	0	nested	intronic	no
0	XLOC_086788	TCONS_00087056	MARCH1	rna9602	sense	intergenic	2413	same_strand	upstream	no
0	XLOC_086788	TCONS_00087056	MARCH1	rna9599	sense	genic	0	nested	intronic	no
0	XLOC_086788	TCONS_00087056	MARCH1	rna9600	sense	genic	0	nested	intronic	no
1	XLOC_344270	TCONS_00345381	LOC106047813	rna39743	antisense	intergenic	38990	divergent	upstream	yes
0	XLOC_344270	TCONS_00345381	LOC106047813	rna39744	antisense	intergenic	38990	divergent	upstream	yes
1	XLOC_345279	TCONS_00346392	FKBP10	rna40043	sense	intergenic	424	same_strand	downstream	no
0	XLOC_345279	TCONS_00346392	P3H4	rna40041	antisense	intergenic	8252	divergent	upstream	no
0	XLOC_345279	TCONS_00346392	FKBP10	rna40042	sense	intergenic	424	same_strand	downstream	no
0	XLOC_345279	TCONS_00346392	NT5C3B	rna40044	antisense	intergenic	960	convergent	downstream	no
0	XLOC_345279	TCONS_00346392	KLHL10	rna40045	sense	intergenic	8718	same_strand	upstream	no
1	XLOC_235666	TCONS_00236416	RRAS2	rna26986	sense	genic	0	nested	intronic	no
0	XLOC_235666	TCONS_00236416	RRAS2	rna26988	sense	intergenic	4028	same_strand	upstream	no
0	XLOC_235666	TCONS_00236416	RRAS2	rna26987	sense	intergenic	1071	same_strand	upstream	no
0	XLOC_235666	TCONS_00236416	LOC106040940	rna26990	sense	intergenic	9423	same_strand	downstream	no
0	XLOC_235666	TCONS_00236416	RRAS2	rna26985	sense	genic	0	nested	intronic	no
0	XLOC_235666	TCONS_00236416	RRAS2	rna26984	sense	genic	0	nested	intronic	no
1	XLOC_264583	TCONS_00265427	LOC106042539	rna30055	sense	intergenic	16165	same_strand	downstream	no
1	XLOC_284198	TCONS_00285106	ARRDC3	rna32233	sense	intergenic	10584	same_strand	upstream	yes
0	XLOC_284198	TCONS_00285106	ARRDC3	rna32232	sense	intergenic	10585	same_strand	upstream	yes
1	XLOC_140969	TCONS_00141418	MAGI2	rna16137	antisense	genic	0	nested	intronic	no
1	XLOC_091110	TCONS_00091397	CDK19	rna10005	sense	intergenic	3296	same_strand	downstream	no
1	XLOC_234586	TCONS_00235330	CDH4	rna26802	sense	genic	0	nested	intronic	yes
0	XLOC_234586	TCONS_00235330	CDH4	rna26804	sense	genic	0	nested	intronic	yes
0	XLOC_234586	TCONS_00235330	CDH4	rna26803	sense	genic	0	nested	intronic	yes
0	XLOC_234586	TCONS_00235330	CDH4	rna26801	sense	genic	0	nested	intronic	yes
0	XLOC_234586	TCONS_00235330	CDH4	rna26805	sense	genic	0	nested	intronic	yes
0	XLOC_234586	TCONS_00235330	CDH4	rna26799	sense	genic	0	nested	intronic	yes
0	XLOC_234586	TCONS_00235330	CDH4	rna26800	sense	genic	0	nested	intronic	yes
1	XLOC_019922	TCONS_00019987	LSAMP	rna1941	antisense	genic	0	nested	intronic	yes
0	XLOC_019922	TCONS_00019987	LSAMP	rna1939	antisense	genic	0	nested	intronic	yes
0	XLOC_019922	TCONS_00019987	LSAMP	rna1946	antisense	intergenic	1052	divergent	upstream	yes
0	XLOC_019922	TCONS_00019987	LSAMP	rna1942	antisense	genic	0	nested	intronic	yes
0	XLOC_019922	TCONS_00019987	LSAMP	rna1943	antisense	intergenic	1052	divergent	upstream	yes
0	XLOC_019922	TCONS_00019987	LSAMP	rna1945	antisense	intergenic	1052	divergent	upstream	yes
0	XLOC_019922	TCONS_00019987	LSAMP	rna1944	antisense	intergenic	1052	divergent	upstream	yes
0	XLOC_019922	TCONS_00019987	LSAMP	rna1940	antisense	genic	0	nested	intronic	yes
1	XLOC_284198	TCONS_00285105	ARRDC3	rna32233	sense	intergenic	10584	same_strand	upstream	yes
0	XLOC_284198	TCONS_00285105	ARRDC3	rna32232	sense	intergenic	10585	same_strand	upstream	yes
1	XLOC_281193	TCONS_00282090	IFNGR2	rna31746	sense	intergenic	4067	same_strand	upstream	yes
0	XLOC_281193	TCONS_00282090	IFNGR2	rna31747	sense	intergenic	4586	same_strand	upstream	yes
0	XLOC_281193	TCONS_00282090	IFNGR2	rna31748	sense	intergenic	6183	same_strand	upstream	yes
1	XLOC_240742	TCONS_00241516	LOC106041173	rna27491	sense	intergenic	11456	same_strand	downstream	no
1	XLOC_342264	TCONS_00343368	SLC23A2	rna39472	sense	intergenic	5987	same_strand	upstream	no
0	XLOC_342264	TCONS_00343368	TMEM230	rna39470	sense	intergenic	7850	same_strand	downstream	no
0	XLOC_342264	TCONS_00343368	SLC23A2	rna39473	sense	intergenic	6165	same_strand	upstream	no
0	XLOC_342264	TCONS_00343368	TMEM230	rna39471	sense	intergenic	7850	same_strand	downstream	no
0	XLOC_342264	TCONS_00343368	TMEM230	rna39469	sense	intergenic	7850	same_strand	downstream	no
1	XLOC_186112	TCONS_00186712	LOC106037805	rna20731	antisense	intergenic	2412	convergent	downstream	no
1	XLOC_166966	TCONS_00167510	TMTC3	rna18810	sense	genic	0	nested	intronic	no
1	XLOC_080962	TCONS_00081206	VTI1A	rna8743	antisense	genic	0	nested	intronic	no
1	XLOC_334687	TCONS_00335755	LOC106047113	rna38521	sense	genic	0	nested	intronic	no
0	XLOC_334687	TCONS_00335755	LOC106047114	rna38522	antisense	intergenic	2529	divergent	upstream	no
0	XLOC_334687	TCONS_00335755	LOC106047113	rna38523	sense	genic	0	nested	intronic	no
1	XLOC_165417	TCONS_00165951	VIPR1	rna18678	antisense	intergenic	56023	divergent	upstream	yes
1	XLOC_171572	TCONS_00172123	TLR4	rna19126	antisense	intergenic	3307	convergent	downstream	no
0	XLOC_171572	TCONS_00172123	TLR4	rna19125	antisense	intergenic	3307	convergent	downstream	no
1	XLOC_099299	TCONS_00099618	CCDC102A	rna11190	sense	intergenic	326	same_strand	upstream	no
0	XLOC_099299	TCONS_00099618	ADGRG5	rna11188	antisense	intergenic	3764	divergent	upstream	no
0	XLOC_099299	TCONS_00099618	ADGRG5	rna11186	antisense	intergenic	1119	divergent	upstream	no
0	XLOC_099299	TCONS_00099618	ADGRG5	rna11189	antisense	intergenic	3764	divergent	upstream	no
0	XLOC_099299	TCONS_00099618	ADGRG5	rna11187	antisense	intergenic	1120	divergent	upstream	no
0	XLOC_099299	TCONS_00099618	ADGRG5	rna11185	antisense	intergenic	1119	divergent	upstream	no
1	XLOC_134570	TCONS_00134987	ANGPT1	rna15643	antisense	intergenic	63098	convergent	downstream	yes
1	XLOC_040175	TCONS_00040311	LOC106029886	rna4604	antisense	genic	0	nested	intronic	no
0	XLOC_040175	TCONS_00040311	LOC106029886	rna4608	antisense	genic	0	nested	intronic	no
0	XLOC_040175	TCONS_00040311	LOC106029886	rna4606	antisense	genic	0	nested	intronic	no
0	XLOC_040175	TCONS_00040311	LOC106029886	rna4610	antisense	genic	0	nested	intronic	no
0	XLOC_040175	TCONS_00040311	LOC106029886	rna4616	antisense	genic	0	nested	intronic	no
0	XLOC_040175	TCONS_00040311	LOC106029886	rna4609	antisense	genic	0	nested	intronic	no
0	XLOC_040175	TCONS_00040311	LOC106029886	rna4611	antisense	genic	0	nested	intronic	no
0	XLOC_040175	TCONS_00040311	LOC106029886	rna4613	antisense	genic	0	nested	intronic	no
0	XLOC_040175	TCONS_00040311	LOC106029886	rna4607	antisense	genic	0	nested	intronic	no
0	XLOC_040175	TCONS_00040311	LOC106029886	rna4614	antisense	genic	0	nested	intronic	no
0	XLOC_040175	TCONS_00040311	LOC106029886	rna4605	antisense	genic	0	nested	intronic	no
0	XLOC_040175	TCONS_00040311	LOC106029886	rna4612	antisense	genic	0	nested	intronic	no
0	XLOC_040175	TCONS_00040311	LOC106029886	rna4615	antisense	genic	0	nested	intronic	no
1	XLOC_325412	TCONS_00326448	ASAP1	rna37158	sense	genic	0	nested	intronic	no
0	XLOC_325412	TCONS_00326448	LOC106046359	rna37159	antisense	intergenic	4583	divergent	upstream	no
1	XLOC_192638	TCONS_00193255	SNAI2	rna21818	antisense	intergenic	7708	convergent	downstream	no
1	XLOC_238757	TCONS_00239521	AUTS2	rna27274	antisense	genic	0	nested	intronic	no
1	XLOC_163704	TCONS_00164234	CNTN6	rna18562	antisense	genic	0	nested	intronic	no
1	XLOC_296581	TCONS_00297521	LOC106044422	rna33689	antisense	genic	0	nested	intronic	no
1	XLOC_299667	TCONS_00300624	DIO2	rna33881	antisense	intergenic	25557	divergent	upstream	yes
0	XLOC_299667	TCONS_00300624	DIO2	rna33882	antisense	intergenic	25557	divergent	upstream	yes
1	XLOC_289733	TCONS_00290658	MN1	rna32681	sense	intergenic	35401	same_strand	downstream	no
1	XLOC_354956	TCONS_00356120	LOR	rna41751	antisense	genic	0	nested	intronic	no
1	XLOC_122338	TCONS_00122722	LOC106034833	rna14160	antisense	intergenic	27	convergent	downstream	no
0	XLOC_122338	TCONS_00122722	LOC106034833	rna14159	antisense	intergenic	27	convergent	downstream	no
1	XLOC_252697	TCONS_00253503	LOC106041994	rna28954	antisense	genic	0	nested	intronic	no
0	XLOC_252697	TCONS_00253503	LOC106041994	rna28955	antisense	genic	0	nested	intronic	no
0	XLOC_252697	TCONS_00253503	LOC106041994	rna28953	antisense	genic	0	nested	intronic	no
1	XLOC_139621	TCONS_00140059	P4HTM	rna15879	sense	genic	0	nested	intronic	no
0	XLOC_139621	TCONS_00140059	LOC106035498	rna15880	antisense	intergenic	2673	divergent	upstream	no
0	XLOC_139621	TCONS_00140059	DALRD3	rna15877	antisense	intergenic	7597	convergent	downstream	no
0	XLOC_139621	TCONS_00140059	WDR6	rna15878	sense	intergenic	4942	same_strand	upstream	no
1	XLOC_297958	TCONS_00298902	ALDH1A1	rna33780	sense	intergenic	41936	same_strand	upstream	no
0	XLOC_297958	TCONS_00298902	ANXA1	rna33781	antisense	intergenic	46771	divergent	upstream	yes
1	XLOC_034870	TCONS_00034977	LOC106048318	rna4038	antisense	intergenic	40060	divergent	upstream	no
1	XLOC_282290	TCONS_00283189	IFT80	rna31929	sense	intergenic	1617	same_strand	downstream	no
0	XLOC_282290	TCONS_00283189	LOC106043567	rna31931	sense	intergenic	7372	same_strand	upstream	no
0	XLOC_282290	TCONS_00283189	LOC106043567	rna31930	sense	intergenic	7372	same_strand	upstream	no
0	XLOC_282290	TCONS_00283189	LOC106043567	rna31934	sense	intergenic	7372	same_strand	upstream	no
0	XLOC_282290	TCONS_00283189	LOC106043567	rna31932	sense	intergenic	7372	same_strand	upstream	no
0	XLOC_282290	TCONS_00283189	IFT80	rna31928	sense	intergenic	3699	same_strand	downstream	no
0	XLOC_282290	TCONS_00283189	LOC106043567	rna31933	sense	intergenic	7372	same_strand	upstream	no
1	XLOC_332278	TCONS_00333333	LOC106046794	rna37880	sense	intergenic	650	same_strand	upstream	no
0	XLOC_332278	TCONS_00333333	HGS	rna37881	sense	intergenic	4820	same_strand	upstream	no
0	XLOC_332278	TCONS_00333333	TMC6	rna37879	sense	intergenic	2017	same_strand	downstream	no
1	XLOC_261708	TCONS_00262537	FBXL17	rna29679	sense	genic	0	nested	intronic	no
1	XLOC_103852	TCONS_00104196	LOC106033633	rna12084	antisense	intergenic	90165	divergent	upstream	no
1	XLOC_294305	TCONS_00295237	LOC106044271	rna33365	antisense	intergenic	12645	convergent	downstream	no
0	XLOC_294305	TCONS_00295237	EZR	rna33364	antisense	intergenic	16364	divergent	upstream	no
1	XLOC_283068	TCONS_00283969	NEGR1	rna32074	sense	intergenic	9743	same_strand	downstream	no
1	XLOC_316487	TCONS_00317492	PDE1C	rna35611	sense	genic	0	nested	intronic	no
0	XLOC_316487	TCONS_00317492	PDE1C	rna35612	sense	genic	0	nested	intronic	no
0	XLOC_316487	TCONS_00317492	PDE1C	rna35614	sense	genic	0	nested	intronic	no
0	XLOC_316487	TCONS_00317492	PDE1C	rna35615	sense	genic	0	nested	intronic	no
0	XLOC_316487	TCONS_00317492	PDE1C	rna35616	sense	genic	0	nested	intronic	no
0	XLOC_316487	TCONS_00317492	PDE1C	rna35613	sense	genic	0	nested	intronic	no
1	XLOC_344688	TCONS_00345800	SEMA6A	rna39882	sense	genic	0	nested	intronic	no
0	XLOC_344688	TCONS_00345800	SEMA6A	rna39878	sense	genic	0	nested	intronic	no
0	XLOC_344688	TCONS_00345800	SEMA6A	rna39881	sense	genic	0	nested	intronic	no
0	XLOC_344688	TCONS_00345800	SEMA6A	rna39880	sense	genic	0	nested	intronic	no
0	XLOC_344688	TCONS_00345800	SEMA6A	rna39879	sense	genic	0	nested	intronic	no
1	XLOC_252237	TCONS_00253042	LOC106041898	rna28944	sense	intergenic	34845	same_strand	downstream	no
0	XLOC_252237	TCONS_00253042	LOC106041900	rna28946	sense	intergenic	39662	same_strand	upstream	no
0	XLOC_252237	TCONS_00253042	LOC106041902	rna28945	sense	intergenic	36919	same_strand	upstream	no
1	XLOC_237673	TCONS_00238450	LOC106041021	rna27168	sense	intergenic	10587	same_strand	upstream	no
0	XLOC_237673	TCONS_00238450	LOC106041021	rna27169	sense	intergenic	10587	same_strand	upstream	no
1	XLOC_063383	TCONS_00063574	GNPDA2	rna6537	sense	intergenic	42009	same_strand	upstream	no
0	XLOC_063383	TCONS_00063574	GUF1	rna6535	antisense	intergenic	49123	convergent	downstream	no
1	XLOC_069954	TCONS_00070158	LOC106031165	rna7318	sense	genic	0	nested	intronic	no
0	XLOC_069954	TCONS_00070158	LOC106031165	rna7317	sense	genic	0	nested	intronic	no
1	XLOC_079569	TCONS_00079807	VTI1A	rna8743	sense	intergenic	19056	same_strand	downstream	no
1	XLOC_252163	TCONS_00252966	USO1	rna28904	sense	genic	0	nested	intronic	no
1	XLOC_021053	TCONS_00021123	PVRL3	rna2278	antisense	intergenic	22948	divergent	upstream	no
1	XLOC_324598	TCONS_00325630	LOC106046278	rna36999	sense	genic	0	nested	intronic	no
1	XLOC_320524	TCONS_00321549	LOC106045947	rna36412	sense	intergenic	76328	same_strand	downstream	no
1	XLOC_173721	TCONS_00174280	ARID4A	rna19322	antisense	intergenic	127	convergent	downstream	no
0	XLOC_173721	TCONS_00174280	LOC106037235	rna19324	antisense	intergenic	7136	divergent	upstream	no
0	XLOC_173721	TCONS_00174280	TIMM9	rna19323	sense	intergenic	5770	same_strand	downstream	no
1	XLOC_097611	TCONS_00097917	LOC106033090	rna10905	antisense	genic	0	nested	intronic	no
0	XLOC_097611	TCONS_00097917	LOC106033090	rna10904	antisense	genic	0	nested	intronic	no
0	XLOC_097611	TCONS_00097917	LOC106033090	rna10903	antisense	genic	0	nested	intronic	no
1	XLOC_060739	TCONS_00060919	KCNS3	rna6519	sense	genic	0	nested	intronic	yes
1	XLOC_204850	TCONS_00205517	LOC106038967	rna22945	sense	intergenic	32481	same_strand	downstream	no
1	XLOC_011955	TCONS_00011991	CTBP1	rna1207	sense	intergenic	22138	same_strand	downstream	no
0	XLOC_011955	TCONS_00011991	CTBP1	rna1205	sense	intergenic	22138	same_strand	downstream	no
0	XLOC_011955	TCONS_00011991	CTBP1	rna1202	sense	intergenic	22138	same_strand	downstream	no
0	XLOC_011955	TCONS_00011991	CTBP1	rna1203	sense	intergenic	22138	same_strand	downstream	no
0	XLOC_011955	TCONS_00011991	CTBP1	rna1206	sense	intergenic	22138	same_strand	downstream	no
0	XLOC_011955	TCONS_00011991	CTBP1	rna1208	sense	intergenic	22138	same_strand	downstream	no
0	XLOC_011955	TCONS_00011991	CTBP1	rna1204	sense	intergenic	22138	same_strand	downstream	no
1	XLOC_346681	TCONS_00347800	NRIP2	rna40287	antisense	genic	0	nested	intronic	no
0	XLOC_346681	TCONS_00347800	ITFG2	rna40288	sense	intergenic	6826	same_strand	downstream	yes
1	XLOC_045832	TCONS_00045977	LOC106030277	rna5590	antisense	intergenic	9395	convergent	downstream	no
0	XLOC_045832	TCONS_00045977	LOC106030277	rna5589	antisense	intergenic	9395	convergent	downstream	no
0	XLOC_045832	TCONS_00045977	LOC106030277	rna5591	antisense	intergenic	9395	convergent	downstream	no
0	XLOC_045832	TCONS_00045977	LOC106030277	rna5588	antisense	intergenic	9395	convergent	downstream	no
1	XLOC_277362	TCONS_00278248	LOC106043246	rna31411	sense	intergenic	3173	same_strand	downstream	no
0	XLOC_277362	TCONS_00278248	UFM1	rna31412	antisense	intergenic	4449	divergent	upstream	no
1	XLOC_226264	TCONS_00226975	SPATA13	rna25830	sense	genic	0	nested	intronic	no
0	XLOC_226264	TCONS_00226975	SPATA13	rna25831	sense	genic	0	nested	intronic	no
0	XLOC_226264	TCONS_00226975	SPATA13	rna25829	sense	genic	0	nested	intronic	no
0	XLOC_226264	TCONS_00226975	SPATA13	rna25828	sense	genic	0	nested	intronic	no
1	XLOC_082524	TCONS_00082773	LOC106032129	rna9266	sense	intergenic	1210	same_strand	upstream	no
0	XLOC_082524	TCONS_00082773	LOC106032128	rna9262	sense	intergenic	9777	same_strand	downstream	no
0	XLOC_082524	TCONS_00082773	LOC106032128	rna9264	sense	intergenic	9777	same_strand	downstream	no
0	XLOC_082524	TCONS_00082773	LOC106032128	rna9263	sense	intergenic	9777	same_strand	downstream	no
0	XLOC_082524	TCONS_00082773	LOC106032128	rna9265	sense	intergenic	9777	same_strand	downstream	no
1	XLOC_332523	TCONS_00333587	CDC25A	rna37937	antisense	intergenic	10327	convergent	downstream	yes
1	XLOC_269391	TCONS_00270250	CPEB4	rna30492	sense	intergenic	35899	same_strand	upstream	no
0	XLOC_269391	TCONS_00270250	CPEB4	rna30493	sense	intergenic	35899	same_strand	upstream	no
1	XLOC_282605	TCONS_00283505	LEKR1	rna31982	sense	intergenic	1661	same_strand	downstream	no
0	XLOC_282605	TCONS_00283505	LEKR1	rna31985	sense	intergenic	7444	same_strand	downstream	no
0	XLOC_282605	TCONS_00283505	LEKR1	rna31983	sense	intergenic	1663	same_strand	downstream	no
0	XLOC_282605	TCONS_00283505	LEKR1	rna31984	sense	intergenic	1663	same_strand	downstream	no
0	XLOC_282605	TCONS_00283505	CCNL1	rna31981	antisense	intergenic	8816	convergent	downstream	no
0	XLOC_282605	TCONS_00283505	CCNL1	rna31980	antisense	intergenic	8816	convergent	downstream	no
1	XLOC_353826	TCONS_00354974	TMEM40	rna41489	antisense	intergenic	361	divergent	upstream	no
0	XLOC_353826	TCONS_00354974	TMEM40	rna41488	antisense	intergenic	361	divergent	upstream	no
1	XLOC_213622	TCONS_00214312	UTRN	rna24178	sense	intergenic	11902	same_strand	upstream	no
1	XLOC_066040	TCONS_00066237	DUSP16	rna6695	sense	genic	0	nested	intronic	no
1	XLOC_233302	TCONS_00234039	EGFL7	rna26455	sense	intergenic	27553	same_strand	upstream	no
0	XLOC_233302	TCONS_00234039	NOTCH1	rna26459	antisense	intergenic	29917	divergent	upstream	no
0	XLOC_233302	TCONS_00234039	EGFL7	rna26454	sense	intergenic	27553	same_strand	upstream	no
0	XLOC_233302	TCONS_00234039	EGFL7	rna26456	sense	intergenic	27553	same_strand	upstream	no
1	XLOC_280336	TCONS_00281229	MEX3B	rna31634	sense	intergenic	3270	same_strand	upstream	no
1	XLOC_352521	TCONS_00353665	URB2	rna41340	antisense	intergenic	26827	convergent	downstream	no
1	XLOC_269737	TCONS_00270597	SH3PXD2B	rna30477	antisense	intergenic	1130	divergent	upstream	no
0	XLOC_269737	TCONS_00270597	SH3PXD2B	rna30474	antisense	intergenic	1130	divergent	upstream	no
0	XLOC_269737	TCONS_00270597	SH3PXD2B	rna30480	antisense	intergenic	8913	divergent	upstream	no
0	XLOC_269737	TCONS_00270597	SH3PXD2B	rna30478	antisense	intergenic	6322	divergent	upstream	no
0	XLOC_269737	TCONS_00270597	SH3PXD2B	rna30475	antisense	intergenic	1130	divergent	upstream	no
0	XLOC_269737	TCONS_00270597	SH3PXD2B	rna30476	antisense	intergenic	1130	divergent	upstream	no
0	XLOC_269737	TCONS_00270597	SH3PXD2B	rna30479	antisense	intergenic	7984	divergent	upstream	no
0	XLOC_269737	TCONS_00270597	STK10	rna30473	antisense	intergenic	6626	convergent	downstream	no
1	XLOC_203353	TCONS_00203995	KLF6	rna22842	antisense	intergenic	11423	convergent	downstream	no
0	XLOC_203353	TCONS_00203995	KLF6	rna22843	antisense	intergenic	11424	convergent	downstream	no
0	XLOC_203353	TCONS_00203995	KLF6	rna22844	antisense	intergenic	14592	convergent	downstream	no
1	XLOC_144757	TCONS_00145220	PDE4D	rna16285	sense	genic	0	nested	intronic	no
0	XLOC_144757	TCONS_00145220	PDE4D	rna16283	sense	genic	0	nested	intronic	no
0	XLOC_144757	TCONS_00145220	PDE4D	rna16286	sense	genic	0	nested	intronic	no
0	XLOC_144757	TCONS_00145220	PDE4D	rna16284	sense	genic	0	nested	intronic	no
1	XLOC_215337	TCONS_00216031	N4BP1	rna24241	antisense	intergenic	27041	divergent	upstream	no
1	XLOC_223915	TCONS_00224616	LOC106040038	rna25329	antisense	intergenic	30568	divergent	upstream	no
1	XLOC_079569	TCONS_00079803	VTI1A	rna8743	sense	intergenic	16293	same_strand	downstream	no
1	XLOC_352881	TCONS_00354026	PCSK1	rna41370	antisense	genic	0	nested	intronic	no
1	XLOC_057562	TCONS_00057734	LOC106030657	rna6174	antisense	intergenic	27240	convergent	downstream	no
1	XLOC_018545	TCONS_00018610	LOC106040153	rna2504	sense	intergenic	74971	same_strand	upstream	no
1	XLOC_044898	TCONS_00045040	MPP6	rna5417	sense	genic	0	nested	intronic	yes
0	XLOC_044898	TCONS_00045040	MPP6	rna5421	sense	intergenic	7855	same_strand	upstream	yes
0	XLOC_044898	TCONS_00045040	MPP6	rna5418	sense	genic	0	nested	intronic	yes
0	XLOC_044898	TCONS_00045040	MPP6	rna5419	sense	genic	0	nested	intronic	yes
0	XLOC_044898	TCONS_00045040	MPP6	rna5420	sense	intergenic	7350	same_strand	upstream	yes
1	XLOC_119331	TCONS_00119707	LOC106034552	rna13870	sense	genic	0	nested	intronic	no
0	XLOC_119331	TCONS_00119707	LOC106034551	rna13871	sense	intergenic	5985	same_strand	upstream	no
0	XLOC_119331	TCONS_00119707	LOC106034551	rna13873	sense	intergenic	5985	same_strand	upstream	no
0	XLOC_119331	TCONS_00119707	LOC106034551	rna13874	sense	intergenic	5985	same_strand	upstream	no
0	XLOC_119331	TCONS_00119707	LOC106034551	rna13872	sense	intergenic	5985	same_strand	upstream	no
0	XLOC_119331	TCONS_00119707	LOC106034551	rna13875	sense	intergenic	5985	same_strand	upstream	no
1	XLOC_103576	TCONS_00103917	SLC12A1	rna11994	antisense	genic	0	nested	intronic	no
0	XLOC_103576	TCONS_00103917	LOC106033647	rna11992	sense	intergenic	5195	same_strand	downstream	no
0	XLOC_103576	TCONS_00103917	CTXN2	rna11995	antisense	intergenic	5819	convergent	downstream	no
0	XLOC_103576	TCONS_00103917	LOC106033647	rna11991	sense	intergenic	5195	same_strand	downstream	no
0	XLOC_103576	TCONS_00103917	LOC106033647	rna11993	sense	intergenic	5195	same_strand	downstream	no
1	XLOC_265977	TCONS_00266827	LOC106042593	rna30198	sense	intergenic	980	same_strand	downstream	no
0	XLOC_265977	TCONS_00266827	SLC22A18	rna30197	sense	intergenic	1182	same_strand	upstream	no
1	XLOC_270387	TCONS_00271255	LOC106042826	rna30536	antisense	intergenic	60227	divergent	upstream	yes
0	XLOC_270387	TCONS_00271255	LOC106042826	rna30537	antisense	intergenic	65029	divergent	upstream	yes
0	XLOC_270387	TCONS_00271255	LOC106042826	rna30539	antisense	intergenic	65110	divergent	upstream	yes
0	XLOC_270387	TCONS_00271255	LOC106042826	rna30538	antisense	intergenic	65029	divergent	upstream	yes
1	XLOC_358840	TCONS_00360023	LOC106029539	rna43209	sense	genic	0	nested	intronic	no
0	XLOC_358840	TCONS_00360023	LOC106029538	rna43210	antisense	intergenic	7729	divergent	upstream	no
1	XLOC_063597	TCONS_00063789	GABRB1	rna6552	antisense	genic	0	nested	intronic	no
0	XLOC_063597	TCONS_00063789	GABRB1	rna6551	antisense	genic	0	nested	intronic	no
1	XLOC_153922	TCONS_00154421	PID1	rna17389	sense	intergenic	15011	same_strand	downstream	no
0	XLOC_153922	TCONS_00154421	PID1	rna17391	sense	intergenic	15011	same_strand	downstream	no
0	XLOC_153922	TCONS_00154421	PID1	rna17392	sense	intergenic	15011	same_strand	downstream	no
0	XLOC_153922	TCONS_00154421	PID1	rna17387	sense	intergenic	15011	same_strand	downstream	no
0	XLOC_153922	TCONS_00154421	PID1	rna17388	sense	intergenic	15011	same_strand	downstream	no
0	XLOC_153922	TCONS_00154421	PID1	rna17393	sense	intergenic	15011	same_strand	downstream	no
0	XLOC_153922	TCONS_00154421	LOC106036240	rna17394	antisense	intergenic	19799	divergent	upstream	no
0	XLOC_153922	TCONS_00154421	PID1	rna17390	sense	intergenic	15011	same_strand	downstream	no
1	XLOC_316699	TCONS_00317704	BBS9	rna35571	sense	intergenic	4908	same_strand	downstream	no
0	XLOC_316699	TCONS_00317704	BMPER	rna35570	sense	intergenic	7943	same_strand	upstream	no
1	XLOC_285202	TCONS_00286112	PTK2	rna32319	sense	genic	0	nested	intronic	yes
1	XLOC_269259	TCONS_00270117	UBTD2	rna30471	sense	genic	0	nested	intronic	no
0	XLOC_269259	TCONS_00270117	UBTD2	rna30470	sense	genic	0	nested	intronic	no
1	XLOC_030145	TCONS_00030238	MYRFL	rna3759	antisense	intergenic	9038	convergent	downstream	no
1	XLOC_255623	TCONS_00256442	PIK3R1	rna29210	sense	intergenic	4116	same_strand	downstream	yes
0	XLOC_255623	TCONS_00256442	PIK3R1	rna29209	sense	intergenic	4116	same_strand	downstream	yes
0	XLOC_255623	TCONS_00256442	PIK3R1	rna29211	sense	intergenic	4116	same_strand	downstream	yes
1	XLOC_317027	TCONS_00318033	HEPH	rna35707	antisense	intergenic	5125	convergent	downstream	yes
0	XLOC_317027	TCONS_00318033	HEPH	rna35709	antisense	intergenic	5125	convergent	downstream	yes
0	XLOC_317027	TCONS_00318033	HEPH	rna35708	antisense	intergenic	5125	convergent	downstream	yes
1	XLOC_060451	TCONS_00060628	DDX1	rna6483	sense	intergenic	24510	same_strand	downstream	no
1	XLOC_310287	TCONS_00311279	SEC23IP	rna35037	sense	genic	0	nested	intronic	no
0	XLOC_310287	TCONS_00311279	MCMBP	rna35038	antisense	intergenic	5533	divergent	upstream	no
1	XLOC_182877	TCONS_00183472	IL1RAPL2	rna20278	sense	genic	0	nested	intronic	no
0	XLOC_182877	TCONS_00183472	IL1RAPL2	rna20276	sense	genic	0	nested	intronic	no
0	XLOC_182877	TCONS_00183472	IL1RAPL2	rna20282	sense	intergenic	6885	same_strand	upstream	no
0	XLOC_182877	TCONS_00183472	IL1RAPL2	rna20275	sense	genic	0	nested	intronic	no
0	XLOC_182877	TCONS_00183472	IL1RAPL2	rna20274	sense	genic	0	nested	intronic	no
0	XLOC_182877	TCONS_00183472	IL1RAPL2	rna20281	sense	genic	0	nested	intronic	no
0	XLOC_182877	TCONS_00183472	IL1RAPL2	rna20279	sense	genic	0	nested	intronic	no
0	XLOC_182877	TCONS_00183472	IL1RAPL2	rna20280	sense	genic	0	nested	intronic	no
0	XLOC_182877	TCONS_00183472	IL1RAPL2	rna20277	sense	genic	0	nested	intronic	no
1	XLOC_194497	TCONS_00195117	FER1L6	rna21918	antisense	genic	0	nested	intronic	no
1	XLOC_243168	TCONS_00243949	DDX20	rna27702	sense	intergenic	111	same_strand	upstream	no
0	XLOC_243168	TCONS_00243949	FAM212B	rna27703	antisense	intergenic	7524	divergent	upstream	no
1	XLOC_344438	TCONS_00345549	LOC106047820	rna39835	antisense	intergenic	3923	divergent	upstream	no
0	XLOC_344438	TCONS_00345549	CHD4	rna39836	sense	intergenic	4673	same_strand	upstream	no
1	XLOC_015095	TCONS_00015145	GSC	rna1731	antisense	genic	0	nested	intronic	no
1	XLOC_037953	TCONS_00038076	LOC106049016	rna4140	antisense	intergenic	606	divergent	upstream	no
0	XLOC_037953	TCONS_00038076	LOC106049025	rna4141	antisense	intergenic	5868	divergent	upstream	no
1	XLOC_082926	TCONS_00083176	PLD1	rna8930	sense	intergenic	5568	same_strand	upstream	no
1	XLOC_212974	TCONS_00213657	PDE10A	rna24087	sense	genic	0	nested	intronic	no
1	XLOC_289550	TCONS_00290474	DAPL1	rna32632	sense	intergenic	6358	same_strand	downstream	yes
0	XLOC_289550	TCONS_00290474	DAPL1	rna32633	sense	intergenic	6358	same_strand	downstream	yes
1	XLOC_209824	TCONS_00210502	LOC106039183	rna23479	antisense	genic	0	nested	intronic	no
1	XLOC_123460	TCONS_00123849	LOC106034889	rna14667	sense	intergenic	2351	same_strand	upstream	no
1	XLOC_305967	TCONS_00306948	TCF4	rna34521	sense	genic	0	nested	intronic	no
0	XLOC_305967	TCONS_00306948	LOC106044903	rna34522	sense	intergenic	7826	same_strand	upstream	no
1	XLOC_324877	TCONS_00325913	LOC106046336	rna37088	sense	intergenic	855	same_strand	upstream	no
0	XLOC_324877	TCONS_00325913	LOC106046335	rna37086	antisense	intergenic	8738	convergent	downstream	yes
0	XLOC_324877	TCONS_00325913	LOC106046335	rna37085	antisense	intergenic	8738	convergent	downstream	yes
0	XLOC_324877	TCONS_00325913	RNPS1	rna37089	antisense	intergenic	3453	divergent	upstream	no
0	XLOC_324877	TCONS_00325913	LOC106046337	rna37087	antisense	intergenic	4700	convergent	downstream	yes
0	XLOC_324877	TCONS_00325913	LOC106046335	rna37084	antisense	intergenic	8738	convergent	downstream	yes
1	XLOC_233130	TCONS_00233866	MVB12B	rna26623	sense	intergenic	18254	same_strand	upstream	no
0	XLOC_233130	TCONS_00233866	MVB12B	rna26624	sense	intergenic	18254	same_strand	upstream	no
1	XLOC_073778	TCONS_00073997	WDR26	rna8023	antisense	intergenic	1591	divergent	upstream	no
0	XLOC_073778	TCONS_00073997	WDR26	rna8024	antisense	intergenic	1790	divergent	upstream	no
0	XLOC_073778	TCONS_00073997	WDR26	rna8025	antisense	intergenic	1794	divergent	upstream	no
1	XLOC_317932	TCONS_00318946	LOC106045660	rna36008	sense	intergenic	1955	same_strand	upstream	no
1	XLOC_132540	TCONS_00132950	GTF2E2	rna15244	sense	intergenic	3000	same_strand	downstream	no
0	XLOC_132540	TCONS_00132950	DCTN6	rna15243	antisense	intergenic	6891	convergent	downstream	no
0	XLOC_132540	TCONS_00132950	GTF2E2	rna15246	sense	intergenic	4157	same_strand	downstream	no
0	XLOC_132540	TCONS_00132950	GTF2E2	rna15245	sense	intergenic	4155	same_strand	downstream	no
1	XLOC_332278	TCONS_00333332	LOC106046794	rna37880	sense	intergenic	650	same_strand	upstream	no
0	XLOC_332278	TCONS_00333332	HGS	rna37881	sense	intergenic	4820	same_strand	upstream	no
0	XLOC_332278	TCONS_00333332	TMC6	rna37879	sense	intergenic	2017	same_strand	downstream	no
1	XLOC_332279	TCONS_00333335	SLC25A10	rna37882	sense	intergenic	1391	same_strand	upstream	no
0	XLOC_332279	TCONS_00333335	HGS	rna37881	sense	intergenic	1502	same_strand	downstream	no
1	XLOC_269820	TCONS_00270684	BOD1	rna30491	sense	intergenic	2912	same_strand	upstream	no
1	XLOC_084142	TCONS_00084399	LOC106032383	rna9382	antisense	intergenic	1638	convergent	downstream	no
1	XLOC_069831	TCONS_00070035	UNG	rna7138	sense	intergenic	499	same_strand	downstream	no
0	XLOC_069831	TCONS_00070035	USP30	rna7141	sense	intergenic	8199	same_strand	downstream	no
0	XLOC_069831	TCONS_00070035	USP30	rna7142	sense	intergenic	8199	same_strand	downstream	no
0	XLOC_069831	TCONS_00070035	ACACB	rna7137	sense	intergenic	3036	same_strand	upstream	no
0	XLOC_069831	TCONS_00070035	USP30	rna7140	sense	intergenic	8199	same_strand	downstream	no
0	XLOC_069831	TCONS_00070035	ALKBH2	rna7139	antisense	intergenic	3528	divergent	upstream	yes
1	XLOC_315390	TCONS_00316394	LOC106045450	rna35504	sense	intergenic	5839	same_strand	downstream	no
0	XLOC_315390	TCONS_00316394	LOC106045455	rna35500	sense	intergenic	6262	same_strand	upstream	no
0	XLOC_315390	TCONS_00316394	LOC106045455	rna35501	sense	intergenic	6180	same_strand	upstream	no
0	XLOC_315390	TCONS_00316394	LOC106045455	rna35503	sense	intergenic	6262	same_strand	upstream	no
0	XLOC_315390	TCONS_00316394	LOC106045455	rna35502	sense	intergenic	6262	same_strand	upstream	no
1	XLOC_276704	TCONS_00277587	LOC106043230	rna31385	sense	intergenic	6160	same_strand	upstream	no
1	XLOC_268428	TCONS_00269285	LOC106042716	rna30406	antisense	intergenic	53871	convergent	downstream	no
0	XLOC_268428	TCONS_00269285	LOC106042716	rna30408	antisense	intergenic	59006	convergent	downstream	no
0	XLOC_268428	TCONS_00269285	LOC106042716	rna30407	antisense	intergenic	53871	convergent	downstream	no
1	XLOC_188108	TCONS_00188710	SOX7	rna21219	sense	intergenic	2944	same_strand	downstream	no
1	XLOC_189536	TCONS_00190142	WNT7B	rna21521	antisense	intergenic	20252	divergent	upstream	no
0	XLOC_189536	TCONS_00190142	WNT7B	rna21522	antisense	intergenic	26274	divergent	upstream	no
1	XLOC_168852	TCONS_00169398	LOC106036913	rna18988	antisense	intergenic	1098	convergent	downstream	no
0	XLOC_168852	TCONS_00169398	CNOT4	rna18989	antisense	intergenic	7031	divergent	upstream	no
1	XLOC_157311	TCONS_00157825	LOC106036462	rna17790	antisense	intergenic	1555	convergent	downstream	no
0	XLOC_157311	TCONS_00157825	NTRK3	rna17779	sense	intergenic	1711	same_strand	downstream	no
0	XLOC_157311	TCONS_00157825	NTRK3	rna17784	sense	intergenic	1711	same_strand	downstream	no
0	XLOC_157311	TCONS_00157825	NTRK3	rna17781	sense	intergenic	1711	same_strand	downstream	no
0	XLOC_157311	TCONS_00157825	LOC106036462	rna17787	antisense	intergenic	1555	convergent	downstream	no
0	XLOC_157311	TCONS_00157825	LOC106036462	rna17788	antisense	intergenic	1555	convergent	downstream	no
0	XLOC_157311	TCONS_00157825	LOC106036462	rna17791	antisense	intergenic	1555	convergent	downstream	no
0	XLOC_157311	TCONS_00157825	NTRK3	rna17783	sense	intergenic	1711	same_strand	downstream	no
0	XLOC_157311	TCONS_00157825	NTRK3	rna17780	sense	intergenic	1711	same_strand	downstream	no
0	XLOC_157311	TCONS_00157825	NTRK3	rna17778	sense	intergenic	1711	same_strand	downstream	no
0	XLOC_157311	TCONS_00157825	LOC106036462	rna17789	antisense	intergenic	1555	convergent	downstream	no
0	XLOC_157311	TCONS_00157825	NTRK3	rna17785	sense	intergenic	1711	same_strand	downstream	no
1	XLOC_066387	TCONS_00066584	PDE3A	rna6734	sense	genic	0	nested	intronic	yes
1	XLOC_242945	TCONS_00243724	PLXNA2	rna27739	sense	genic	0	nested	intronic	no
0	XLOC_242945	TCONS_00243724	PLXNA2	rna27743	sense	genic	0	nested	intronic	no
0	XLOC_242945	TCONS_00243724	PLXNA2	rna27737	sense	genic	0	nested	intronic	no
0	XLOC_242945	TCONS_00243724	PLXNA2	rna27738	sense	genic	0	nested	intronic	no
0	XLOC_242945	TCONS_00243724	PLXNA2	rna27742	sense	genic	0	nested	intronic	no
0	XLOC_242945	TCONS_00243724	PLXNA2	rna27741	sense	genic	0	nested	intronic	no
0	XLOC_242945	TCONS_00243724	PLXNA2	rna27740	sense	genic	0	nested	intronic	no
1	XLOC_120426	TCONS_00120806	LOC106034490	rna13904	sense	intergenic	2083	same_strand	downstream	no
0	XLOC_120426	TCONS_00120806	LOC106034487	rna13903	sense	intergenic	5789	same_strand	upstream	no
1	XLOC_213253	TCONS_00213942	LOC106039532	rna24122	antisense	genic	0	nested	intronic	no
1	XLOC_132063	TCONS_00132473	LOC106035116	rna15429	sense	intergenic	878	same_strand	upstream	no
1	XLOC_246977	TCONS_00247766	ST6GAL2	rna28362	antisense	genic	0	nested	intronic	no
0	XLOC_246977	TCONS_00247766	ST6GAL2	rna28358	antisense	genic	0	nested	intronic	no
0	XLOC_246977	TCONS_00247766	ST6GAL2	rna28361	antisense	genic	0	nested	intronic	no
0	XLOC_246977	TCONS_00247766	ST6GAL2	rna28360	antisense	genic	0	nested	intronic	no
0	XLOC_246977	TCONS_00247766	ST6GAL2	rna28356	antisense	genic	0	nested	intronic	no
0	XLOC_246977	TCONS_00247766	ST6GAL2	rna28364	antisense	intergenic	6268	divergent	upstream	no
0	XLOC_246977	TCONS_00247766	ST6GAL2	rna28355	antisense	genic	0	nested	intronic	no
0	XLOC_246977	TCONS_00247766	ST6GAL2	rna28359	antisense	genic	0	nested	intronic	no
0	XLOC_246977	TCONS_00247766	ST6GAL2	rna28363	antisense	intergenic	2904	divergent	upstream	no
1	XLOC_013534	TCONS_00013577	LOC106035333	rna1474	sense	intergenic	1405	same_strand	downstream	no
1	XLOC_287503	TCONS_00288418	MNT	rna32445	sense	intergenic	6987	same_strand	upstream	no
1	XLOC_282037	TCONS_00282936	LOC106043473	rna31861	sense	intergenic	54565	same_strand	upstream	no
1	XLOC_095236	TCONS_00095533	REEP2	rna10159	sense	intergenic	1966	same_strand	downstream	no
0	XLOC_095236	TCONS_00095533	EGR1	rna10158	sense	intergenic	6389	same_strand	upstream	yes
0	XLOC_095236	TCONS_00095533	REEP2	rna10160	sense	intergenic	2533	same_strand	downstream	no
1	XLOC_358553	TCONS_00359732	LOC106029359	rna43000	sense	genic	0	nested	intronic	no
1	XLOC_109669	TCONS_00110031	ST6GALNAC3	rna12802	antisense	genic	0	nested	intronic	no
0	XLOC_109669	TCONS_00110031	ST6GALNAC3	rna12804	antisense	genic	0	nested	intronic	no
0	XLOC_109669	TCONS_00110031	ST6GALNAC3	rna12803	antisense	genic	0	nested	intronic	no
1	XLOC_140138	TCONS_00140579	MAGI1	rna15970	sense	genic	0	nested	intronic	no
0	XLOC_140138	TCONS_00140579	MAGI1	rna15971	sense	genic	0	nested	intronic	no
0	XLOC_140138	TCONS_00140579	MAGI1	rna15963	sense	genic	0	nested	intronic	no
0	XLOC_140138	TCONS_00140579	MAGI1	rna15969	sense	genic	0	nested	intronic	no
0	XLOC_140138	TCONS_00140579	MAGI1	rna15964	sense	genic	0	nested	intronic	no
0	XLOC_140138	TCONS_00140579	MAGI1	rna15972	sense	genic	0	nested	intronic	no
0	XLOC_140138	TCONS_00140579	MAGI1	rna15967	sense	genic	0	nested	intronic	no
0	XLOC_140138	TCONS_00140579	MAGI1	rna15966	sense	genic	0	nested	intronic	no
0	XLOC_140138	TCONS_00140579	MAGI1	rna15968	sense	genic	0	nested	intronic	no
0	XLOC_140138	TCONS_00140579	MAGI1	rna15973	sense	genic	0	nested	intronic	no
0	XLOC_140138	TCONS_00140579	MAGI1	rna15962	sense	genic	0	nested	intronic	no
0	XLOC_140138	TCONS_00140579	MAGI1	rna15965	sense	genic	0	nested	intronic	no
1	XLOC_278650	TCONS_00279543	NR0B1	rna31498	antisense	intergenic	29463	divergent	upstream	no
1	XLOC_109222	TCONS_00109582	LOC106034079	rna13029	antisense	intergenic	11480	convergent	downstream	no
0	XLOC_109222	TCONS_00109582	HMCN1	rna13030	sense	intergenic	14855	same_strand	upstream	yes
1	XLOC_331549	TCONS_00332601	LOC106046694	rna37702	antisense	genic	0	nested	intronic	no
1	XLOC_282174	TCONS_00283073	ZHX3	rna31867	sense	genic	0	nested	intronic	no
0	XLOC_282174	TCONS_00283073	LPIN3	rna31877	antisense	intergenic	6277	divergent	upstream	no
0	XLOC_282174	TCONS_00283073	LPIN3	rna31880	antisense	intergenic	7791	divergent	upstream	no
0	XLOC_282174	TCONS_00283073	LPIN3	rna31879	antisense	intergenic	7604	divergent	upstream	no
0	XLOC_282174	TCONS_00283073	ZHX3	rna31871	sense	intergenic	994	same_strand	upstream	no
0	XLOC_282174	TCONS_00283073	ZHX3	rna31870	sense	genic	0	nested	intronic	no
0	XLOC_282174	TCONS_00283073	LPIN3	rna31876	antisense	intergenic	4446	divergent	upstream	no
0	XLOC_282174	TCONS_00283073	LPIN3	rna31878	antisense	intergenic	7601	divergent	upstream	no
0	XLOC_282174	TCONS_00283073	ZHX3	rna31868	sense	genic	0	nested	intronic	no
0	XLOC_282174	TCONS_00283073	ZHX3	rna31869	sense	genic	0	nested	intronic	no
1	XLOC_174167	TCONS_00174726	LOC106037163	rna19485	sense	intergenic	41102	same_strand	upstream	no
0	XLOC_174167	TCONS_00174726	LOC106037163	rna19486	sense	intergenic	46192	same_strand	upstream	no
0	XLOC_174167	TCONS_00174726	LOC106037163	rna19487	sense	intergenic	41102	same_strand	upstream	no
1	XLOC_104416	TCONS_00104761	TLN2	rna12322	sense	intergenic	5470	same_strand	downstream	no
0	XLOC_104416	TCONS_00104761	TLN2	rna12321	sense	intergenic	5470	same_strand	downstream	no
1	XLOC_009955	TCONS_00009981	STIM2	rna1637	sense	genic	0	nested	intronic	no
0	XLOC_009955	TCONS_00009981	STIM2	rna1636	sense	genic	0	nested	intronic	no
0	XLOC_009955	TCONS_00009981	STIM2	rna1638	sense	genic	0	nested	intronic	no
1	XLOC_294985	TCONS_00295918	TNFRSF4	rna33417	sense	intergenic	76	same_strand	downstream	yes
0	XLOC_294985	TCONS_00295918	TNFRSF18	rna33419	sense	intergenic	5083	same_strand	upstream	no
0	XLOC_294985	TCONS_00295918	TNFRSF4	rna33418	sense	intergenic	76	same_strand	downstream	yes
1	XLOC_045884	TCONS_00046029	LOC106030278	rna5592	sense	genic	0	nested	intronic	no
1	XLOC_352116	TCONS_00353254	FAM83H	rna41234	antisense	intergenic	607	divergent	upstream	no
0	XLOC_352116	TCONS_00353254	LOC106048751	rna41237	antisense	intergenic	2316	convergent	downstream	no
0	XLOC_352116	TCONS_00353254	LOC106048751	rna41238	antisense	intergenic	2316	convergent	downstream	no
0	XLOC_352116	TCONS_00353254	LOC106048751	rna41236	antisense	intergenic	2315	convergent	downstream	no
0	XLOC_352116	TCONS_00353254	LOC106048752	rna41239	sense	intergenic	6362	same_strand	upstream	yes
0	XLOC_352116	TCONS_00353254	LOC106048751	rna41235	antisense	intergenic	2315	convergent	downstream	no
1	XLOC_257894	TCONS_00258719	LOC106042195	rna29397	sense	genic	0	nested	intronic	no
0	XLOC_257894	TCONS_00258719	LOC106042196	rna29396	sense	intergenic	8927	same_strand	downstream	no
1	XLOC_089381	TCONS_00089660	TPD52L1	rna9757	antisense	intergenic	300	convergent	downstream	no
0	XLOC_089381	TCONS_00089660	TPD52L1	rna9755	antisense	intergenic	301	convergent	downstream	no
0	XLOC_089381	TCONS_00089660	TPD52L1	rna9761	antisense	intergenic	8467	convergent	downstream	no
0	XLOC_089381	TCONS_00089660	TPD52L1	rna9759	antisense	intergenic	301	convergent	downstream	no
0	XLOC_089381	TCONS_00089660	HDDC2	rna9762	sense	intergenic	737	same_strand	downstream	yes
0	XLOC_089381	TCONS_00089660	TPD52L1	rna9758	antisense	intergenic	300	convergent	downstream	no
0	XLOC_089381	TCONS_00089660	TPD52L1	rna9756	antisense	intergenic	300	convergent	downstream	no
1	XLOC_005028	TCONS_00005037	IPMK	rna540	sense	intergenic	1483	same_strand	upstream	no
0	XLOC_005028	TCONS_00005037	CISD1	rna541	sense	intergenic	6363	same_strand	downstream	no
1	XLOC_153698	TCONS_00154194	LOC106036225	rna17311	antisense	genic	0	nested	intronic	no
1	XLOC_158023	TCONS_00158539	IGF1R	rna17905	antisense	intergenic	23954	divergent	upstream	no
1	XLOC_138974	TCONS_00139409	THOC7	rna15940	antisense	intergenic	4813	divergent	upstream	no
1	XLOC_122634	TCONS_00123021	MMD	rna14344	antisense	genic	0	nested	intronic	no
0	XLOC_122634	TCONS_00123021	MMD	rna14345	antisense	genic	0	nested	intronic	no
1	XLOC_180576	TCONS_00181167	SDHAF3	rna20034	sense	intergenic	546	same_strand	downstream	no
1	XLOC_332496	TCONS_00333554	PTH1R	rna37982	antisense	intergenic	2756	divergent	upstream	no
0	XLOC_332496	TCONS_00333554	PTH1R	rna37983	antisense	intergenic	3267	divergent	upstream	no
1	XLOC_233405	TCONS_00234142	TTLL11	rna26542	sense	genic	0	nested	intronic	no
0	XLOC_233405	TCONS_00234142	TTLL11	rna26538	sense	genic	0	nested	intronic	no
0	XLOC_233405	TCONS_00234142	TTLL11	rna26543	sense	genic	0	nested	intronic	no
0	XLOC_233405	TCONS_00234142	TTLL11	rna26539	sense	genic	0	nested	intronic	no
0	XLOC_233405	TCONS_00234142	TTLL11	rna26540	sense	genic	0	nested	intronic	no
0	XLOC_233405	TCONS_00234142	TTLL11	rna26537	sense	genic	0	nested	intronic	no
0	XLOC_233405	TCONS_00234142	TTLL11	rna26541	sense	genic	0	nested	intronic	no
1	XLOC_164979	TCONS_00165511	SLC4A11	rna18604	sense	intergenic	25309	same_strand	upstream	no
1	XLOC_249542	TCONS_00250340	LOC106041740	rna28560	antisense	intergenic	67305	divergent	upstream	no
1	XLOC_355031	TCONS_00356195	LOC106049144	rna41761	antisense	intergenic	5004	convergent	downstream	no
0	XLOC_355031	TCONS_00356195	ACADM	rna41763	sense	intergenic	8186	same_strand	downstream	no
0	XLOC_355031	TCONS_00356195	ACADM	rna41765	sense	intergenic	9303	same_strand	downstream	no
0	XLOC_355031	TCONS_00356195	LOC106049144	rna41762	antisense	intergenic	5019	convergent	downstream	no
0	XLOC_355031	TCONS_00356195	ACADM	rna41764	sense	intergenic	9303	same_strand	downstream	no
1	XLOC_095472	TCONS_00095771	PDLIM4	rna10284	sense	intergenic	17210	same_strand	upstream	no
0	XLOC_095472	TCONS_00095771	P4HA2	rna10286	antisense	intergenic	18282	divergent	upstream	no
0	XLOC_095472	TCONS_00095771	P4HA2	rna10290	antisense	intergenic	18282	divergent	upstream	no
0	XLOC_095472	TCONS_00095771	P4HA2	rna10288	antisense	intergenic	18282	divergent	upstream	no
0	XLOC_095472	TCONS_00095771	P4HA2	rna10285	antisense	intergenic	18282	divergent	upstream	no
0	XLOC_095472	TCONS_00095771	P4HA2	rna10289	antisense	intergenic	18282	divergent	upstream	no
0	XLOC_095472	TCONS_00095771	P4HA2	rna10287	antisense	intergenic	18282	divergent	upstream	no
1	XLOC_166955	TCONS_00167498	LOC106036792	rna18801	sense	intergenic	3307	same_strand	upstream	yes
1	XLOC_174240	TCONS_00174799	AHNAK2	rna19509	antisense	intergenic	15690	divergent	upstream	no
1	XLOC_102424	TCONS_00102752	ADAP1	rna11876	antisense	genic	0	nested	intronic	yes
0	XLOC_102424	TCONS_00102752	GET4	rna11872	sense	intergenic	6762	same_strand	downstream	no
0	XLOC_102424	TCONS_00102752	GET4	rna11873	sense	intergenic	6762	same_strand	downstream	no
0	XLOC_102424	TCONS_00102752	ADAP1	rna11875	antisense	genic	0	nested	intronic	yes
0	XLOC_102424	TCONS_00102752	GET4	rna11874	sense	intergenic	6762	same_strand	downstream	no
1	XLOC_204628	TCONS_00205285	CHST15	rna22896	antisense	intergenic	25715	divergent	upstream	no
1	XLOC_354526	TCONS_00355686	LOC106049068	rna41685	sense	intergenic	3769	same_strand	downstream	no
0	XLOC_354526	TCONS_00355686	ANP32E	rna41683	sense	intergenic	5916	same_strand	upstream	no
0	XLOC_354526	TCONS_00355686	ANP32E	rna41684	sense	intergenic	5916	same_strand	upstream	no
1	XLOC_004561	TCONS_00004570	LOC106030190	rna467	antisense	intergenic	16121	convergent	downstream	no
1	XLOC_352240	TCONS_00353381	IP6K1	rna41264	sense	genic	0	nested	intronic	no
0	XLOC_352240	TCONS_00353381	IP6K1	rna41263	sense	genic	0	nested	intronic	no
0	XLOC_352240	TCONS_00353381	IP6K1	rna41261	sense	genic	0	nested	intronic	no
0	XLOC_352240	TCONS_00353381	IP6K1	rna41262	sense	genic	0	nested	intronic	no
1	XLOC_327378	TCONS_00328418	LOC106046408	rna37233	sense	intergenic	29400	same_strand	downstream	no
0	XLOC_327378	TCONS_00328418	LOC106046408	rna37234	sense	intergenic	29400	same_strand	downstream	no
1	XLOC_342263	TCONS_00343367	TMEM230	rna39469	sense	intergenic	557	same_strand	upstream	no
0	XLOC_342263	TCONS_00343367	TMEM230	rna39470	sense	intergenic	600	same_strand	upstream	no
0	XLOC_342263	TCONS_00343367	PCNA	rna39468	sense	intergenic	580	same_strand	downstream	no
0	XLOC_342263	TCONS_00343367	TMEM230	rna39471	sense	intergenic	762	same_strand	upstream	no
1	XLOC_166880	TCONS_00167422	RHEB	rna18789	sense	genic	0	nested	intronic	no
0	XLOC_166880	TCONS_00167422	RHEB	rna18788	sense	genic	0	nested	intronic	no
0	XLOC_166880	TCONS_00167422	RHEB	rna18786	sense	genic	0	nested	intronic	no
0	XLOC_166880	TCONS_00167422	RHEB	rna18787	sense	genic	0	nested	intronic	no
1	XLOC_358788	TCONS_00359967	LOC106029488	rna43148	antisense	genic	0	nested	intronic	no
1	XLOC_233764	TCONS_00234503	MYT1	rna26724	sense	intergenic	3326	same_strand	downstream	no
0	XLOC_233764	TCONS_00234503	MYT1	rna26725	sense	intergenic	3326	same_strand	downstream	no
0	XLOC_233764	TCONS_00234503	PCMTD2	rna26728	sense	intergenic	7298	same_strand	upstream	no
0	XLOC_233764	TCONS_00234503	MYT1	rna26722	sense	intergenic	3326	same_strand	downstream	no
0	XLOC_233764	TCONS_00234503	MYT1	rna26723	sense	intergenic	3326	same_strand	downstream	no
0	XLOC_233764	TCONS_00234503	PCMTD2	rna26727	sense	intergenic	7246	same_strand	upstream	no
1	XLOC_217662	TCONS_00218359	RBM7	rna24727	antisense	intergenic	753	divergent	upstream	no
0	XLOC_217662	TCONS_00218359	REXO2	rna24726	antisense	intergenic	4518	divergent	upstream	no
0	XLOC_217662	TCONS_00218359	ZBTB16	rna24728	sense	intergenic	2823	same_strand	upstream	no
1	XLOC_029630	TCONS_00029723	NAP1L1	rna3702	sense	intergenic	10510	same_strand	upstream	no
0	XLOC_029630	TCONS_00029723	NAP1L1	rna3703	sense	intergenic	14766	same_strand	upstream	no
1	XLOC_283068	TCONS_00283971	NEGR1	rna32074	sense	intergenic	4321	same_strand	downstream	no
1	XLOC_296769	TCONS_00297709	RAB20	rna33718	antisense	intergenic	1054	divergent	upstream	yes
1	XLOC_121492	TCONS_00121872	KPNA2	rna14220	sense	intergenic	1984	same_strand	downstream	yes
0	XLOC_121492	TCONS_00121872	KPNA2	rna14221	sense	intergenic	1984	same_strand	downstream	yes
1	XLOC_002518	TCONS_00002524	LDB3	rna848	sense	intergenic	10374	same_strand	downstream	no
0	XLOC_002518	TCONS_00002524	LDB3	rna841	sense	intergenic	10374	same_strand	downstream	no
0	XLOC_002518	TCONS_00002524	LDB3	rna840	sense	intergenic	10374	same_strand	downstream	no
0	XLOC_002518	TCONS_00002524	LDB3	rna849	sense	intergenic	10374	same_strand	downstream	no
0	XLOC_002518	TCONS_00002524	LDB3	rna836	sense	intergenic	10374	same_strand	downstream	no
0	XLOC_002518	TCONS_00002524	LDB3	rna839	sense	intergenic	10374	same_strand	downstream	no
0	XLOC_002518	TCONS_00002524	LDB3	rna847	sense	intergenic	10374	same_strand	downstream	no
0	XLOC_002518	TCONS_00002524	LDB3	rna844	sense	intergenic	16993	same_strand	downstream	no
0	XLOC_002518	TCONS_00002524	LDB3	rna835	sense	intergenic	10374	same_strand	downstream	no
0	XLOC_002518	TCONS_00002524	LDB3	rna842	sense	intergenic	10374	same_strand	downstream	no
0	XLOC_002518	TCONS_00002524	LDB3	rna834	sense	intergenic	10374	same_strand	downstream	no
0	XLOC_002518	TCONS_00002524	LDB3	rna838	sense	intergenic	10374	same_strand	downstream	no
0	XLOC_002518	TCONS_00002524	LDB3	rna837	sense	intergenic	10374	same_strand	downstream	no
0	XLOC_002518	TCONS_00002524	LDB3	rna845	sense	intergenic	10374	same_strand	downstream	no
0	XLOC_002518	TCONS_00002524	LDB3	rna850	sense	intergenic	10374	same_strand	downstream	no
0	XLOC_002518	TCONS_00002524	LDB3	rna851	sense	intergenic	10374	same_strand	downstream	no
0	XLOC_002518	TCONS_00002524	LDB3	rna843	sense	intergenic	10374	same_strand	downstream	no
0	XLOC_002518	TCONS_00002524	LDB3	rna846	sense	intergenic	10374	same_strand	downstream	no
1	XLOC_152093	TCONS_00152584	IGSF5	rna17220	antisense	intergenic	139	divergent	upstream	yes
1	XLOC_036616	TCONS_00036727	MRPL14	rna4418	antisense	intergenic	57957	convergent	downstream	no
1	XLOC_276327	TCONS_00277208	ALMS1	rna31283	sense	genic	0	nested	intronic	no
0	XLOC_276327	TCONS_00277208	TRNAG-GCC	rna31284	sense	intergenic	4995	same_strand	downstream	no
1	XLOC_205376	TCONS_00206043	CTBP2	rna22913	sense	intergenic	54176	same_strand	upstream	no
1	XLOC_253563	TCONS_00254373	LOC106042042	rna29076	sense	intergenic	56076	same_strand	upstream	no
1	XLOC_306477	TCONS_00307460	LOC106045020	rna34740	antisense	genic	0	nested	intronic	no
0	XLOC_306477	TCONS_00307460	LOC106045020	rna34741	antisense	genic	0	nested	intronic	no
0	XLOC_306477	TCONS_00307460	LOC106045020	rna34734	antisense	genic	0	nested	intronic	no
0	XLOC_306477	TCONS_00307460	LOC106045020	rna34742	antisense	genic	0	nested	intronic	no
0	XLOC_306477	TCONS_00307460	LOC106045020	rna34737	antisense	genic	0	nested	intronic	no
0	XLOC_306477	TCONS_00307460	LOC106045020	rna34735	antisense	genic	0	nested	intronic	no
0	XLOC_306477	TCONS_00307460	LOC106045020	rna34736	antisense	genic	0	nested	intronic	no
0	XLOC_306477	TCONS_00307460	LOC106045020	rna34733	antisense	genic	0	nested	intronic	no
0	XLOC_306477	TCONS_00307460	LOC106045020	rna34738	antisense	genic	0	nested	intronic	no
0	XLOC_306477	TCONS_00307460	LOC106045020	rna34743	antisense	genic	0	nested	intronic	no
1	XLOC_135126	TCONS_00135546	RNF19A	rna15565	sense	intergenic	626	same_strand	downstream	no
0	XLOC_135126	TCONS_00135546	SPAG1	rna15563	antisense	intergenic	5656	convergent	downstream	yes
0	XLOC_135126	TCONS_00135546	SPAG1	rna15564	antisense	intergenic	5656	convergent	downstream	yes
1	XLOC_071414	TCONS_00071627	LOC106031476	rna7868	sense	intergenic	22627	same_strand	downstream	no
1	XLOC_178370	TCONS_00178945	LOC106037465	rna19794	sense	intergenic	23593	same_strand	upstream	no
1	XLOC_008168	TCONS_00008193	TNIP2	rna1276	antisense	intergenic	1005	convergent	downstream	no
0	XLOC_008168	TCONS_00008193	LOC106034519	rna1274	sense	intergenic	7311	same_strand	downstream	no
0	XLOC_008168	TCONS_00008193	LOC106034519	rna1275	sense	intergenic	9846	same_strand	downstream	no
0	XLOC_008168	TCONS_00008193	LOC106034519	rna1273	sense	intergenic	7311	same_strand	downstream	no
1	XLOC_029632	TCONS_00029725	NAP1L1	rna3702	sense	intergenic	4494	same_strand	upstream	no
0	XLOC_029632	TCONS_00029725	NAP1L1	rna3703	sense	intergenic	8750	same_strand	upstream	no
1	XLOC_332757	TCONS_00333823	BCAS3	rna38025	sense	genic	0	nested	intronic	no
0	XLOC_332757	TCONS_00333823	BCAS3	rna38031	sense	genic	0	nested	intronic	no
0	XLOC_332757	TCONS_00333823	BCAS3	rna38032	sense	genic	0	nested	intronic	no
0	XLOC_332757	TCONS_00333823	BCAS3	rna38028	sense	genic	0	nested	intronic	no
0	XLOC_332757	TCONS_00333823	BCAS3	rna38024	sense	genic	0	nested	intronic	no
0	XLOC_332757	TCONS_00333823	BCAS3	rna38026	sense	genic	0	nested	intronic	no
0	XLOC_332757	TCONS_00333823	BCAS3	rna38027	sense	genic	0	nested	intronic	no
0	XLOC_332757	TCONS_00333823	BCAS3	rna38029	sense	genic	0	nested	intronic	no
0	XLOC_332757	TCONS_00333823	BCAS3	rna38030	sense	genic	0	nested	intronic	no
1	XLOC_064907	TCONS_00065102	RERG	rna6826	sense	genic	0	nested	intronic	yes
0	XLOC_064907	TCONS_00065102	RERG	rna6827	sense	genic	0	nested	intronic	yes
0	XLOC_064907	TCONS_00065102	RERG	rna6828	sense	genic	0	nested	intronic	yes
1	XLOC_233130	TCONS_00233863	MVB12B	rna26623	sense	intergenic	18254	same_strand	upstream	no
0	XLOC_233130	TCONS_00233863	MVB12B	rna26624	sense	intergenic	18254	same_strand	upstream	no
1	XLOC_148683	TCONS_00149159	SYN3	rna16702	sense	genic	0	nested	intronic	no
0	XLOC_148683	TCONS_00149159	SYN3	rna16701	sense	genic	0	nested	intronic	no
1	XLOC_066286	TCONS_00066483	PTHLH	rna6722	sense	intergenic	32335	same_strand	upstream	no
1	XLOC_256818	TCONS_00257640	LOC106042140	rna29331	sense	intergenic	49716	same_strand	downstream	no
1	XLOC_071414	TCONS_00071623	LOC106031476	rna7868	sense	intergenic	17138	same_strand	downstream	no
1	XLOC_358833	TCONS_00360017	LOC106029523	rna43197	sense	intergenic	9218	same_strand	downstream	no
1	XLOC_113118	TCONS_00113482	PANX1	rna13154	sense	genic	0	nested	intronic	no
0	XLOC_113118	TCONS_00113482	PANX1	rna13155	sense	intergenic	196	same_strand	upstream	no
1	XLOC_332523	TCONS_00333588	CDC25A	rna37937	antisense	intergenic	10327	convergent	downstream	yes
1	XLOC_033089	TCONS_00033187	RAP1B	rna3786	sense	intergenic	5518	same_strand	upstream	no
1	XLOC_277621	TCONS_00278508	ZFAT	rna31439	sense	intergenic	32379	same_strand	upstream	no
1	XLOC_189558	TCONS_00190164	LOC106038237	rna21524	antisense	intergenic	12743	convergent	downstream	no
0	XLOC_189558	TCONS_00190164	LOC106038237	rna21526	antisense	intergenic	12743	convergent	downstream	no
0	XLOC_189558	TCONS_00190164	LOC106038237	rna21525	antisense	intergenic	12743	convergent	downstream	no
1	XLOC_099127	TCONS_00099445	ERI3	rna11019	antisense	genic	0	nested	intronic	no
0	XLOC_099127	TCONS_00099445	ERI3	rna11020	antisense	genic	0	nested	intronic	no
0	XLOC_099127	TCONS_00099445	ERI3	rna11018	antisense	genic	0	nested	intronic	no
1	XLOC_014420	TCONS_00014468	SLC25A29	rna1650	antisense	intergenic	334	divergent	upstream	no
0	XLOC_014420	TCONS_00014468	SLC25A47	rna1649	sense	intergenic	5572	same_strand	upstream	no
0	XLOC_014420	TCONS_00014468	SLC25A29	rna1652	antisense	intergenic	361	divergent	upstream	no
0	XLOC_014420	TCONS_00014468	SLC25A29	rna1651	antisense	intergenic	340	divergent	upstream	no
1	XLOC_207261	TCONS_00207934	LOC106039012	rna23057	sense	intergenic	8762	same_strand	upstream	no
1	XLOC_343665	TCONS_00344771	GLUL	rna39697	sense	intergenic	11014	same_strand	downstream	no
0	XLOC_343665	TCONS_00344771	ZNF648	rna39698	antisense	intergenic	17729	convergent	downstream	no
1	XLOC_104031	TCONS_00104376	TCF12	rna12136	sense	intergenic	1811	same_strand	downstream	no
0	XLOC_104031	TCONS_00104376	TCF12	rna12139	sense	intergenic	1811	same_strand	downstream	no
0	XLOC_104031	TCONS_00104376	TCF12	rna12140	sense	intergenic	1812	same_strand	downstream	no
0	XLOC_104031	TCONS_00104376	TCF12	rna12143	sense	intergenic	1812	same_strand	downstream	no
0	XLOC_104031	TCONS_00104376	TCF12	rna12141	sense	intergenic	1812	same_strand	downstream	no
0	XLOC_104031	TCONS_00104376	TCF12	rna12142	sense	intergenic	1812	same_strand	downstream	no
0	XLOC_104031	TCONS_00104376	TCF12	rna12138	sense	intergenic	1811	same_strand	downstream	no
0	XLOC_104031	TCONS_00104376	TCF12	rna12137	sense	intergenic	1811	same_strand	downstream	no
1	XLOC_356259	TCONS_00357430	MAP4K5	rna42030	sense	intergenic	3608	same_strand	upstream	no
0	XLOC_356259	TCONS_00357430	MAP4K5	rna42031	sense	intergenic	3608	same_strand	upstream	no
0	XLOC_356259	TCONS_00357430	MAP4K5	rna42029	sense	intergenic	3608	same_strand	upstream	no
0	XLOC_356259	TCONS_00357430	MAP4K5	rna42033	sense	intergenic	3651	same_strand	upstream	no
0	XLOC_356259	TCONS_00357430	ATL1	rna42028	antisense	intergenic	5112	divergent	upstream	no
0	XLOC_356259	TCONS_00357430	MAP4K5	rna42032	sense	intergenic	3608	same_strand	upstream	no
1	XLOC_176647	TCONS_00177217	ST8SIA5	rna19621	sense	intergenic	89	same_strand	downstream	no
0	XLOC_176647	TCONS_00177217	ST8SIA5	rna19623	sense	intergenic	1386	same_strand	downstream	no
0	XLOC_176647	TCONS_00177217	ST8SIA5	rna19626	sense	intergenic	1386	same_strand	downstream	no
0	XLOC_176647	TCONS_00177217	ST8SIA5	rna19622	sense	intergenic	1386	same_strand	downstream	no
0	XLOC_176647	TCONS_00177217	ST8SIA5	rna19625	sense	intergenic	1386	same_strand	downstream	no
0	XLOC_176647	TCONS_00177217	ST8SIA5	rna19624	sense	intergenic	1386	same_strand	downstream	no
1	XLOC_140020	TCONS_00140458	ADAMTS9	rna15948	sense	intergenic	2527	same_strand	upstream	yes
1	XLOC_276078	TCONS_00276959	SPR	rna31296	antisense	intergenic	18471	divergent	upstream	no
1	XLOC_073002	TCONS_00073219	XDH	rna8154	sense	intergenic	6359	same_strand	upstream	yes
1	XLOC_292867	TCONS_00293795	LOC106044094	rna33125	sense	intergenic	1187	same_strand	upstream	no
0	XLOC_292867	TCONS_00293795	LOC106044078	rna33126	sense	intergenic	7736	same_strand	upstream	no
0	XLOC_292867	TCONS_00293795	GFI1B	rna33123	sense	intergenic	6942	same_strand	downstream	no
0	XLOC_292867	TCONS_00293795	GFI1B	rna33124	sense	intergenic	6942	same_strand	downstream	no
1	XLOC_298622	TCONS_00299575	EVA1A	rna33823	antisense	intergenic	8850	convergent	downstream	no
0	XLOC_298622	TCONS_00299575	EVA1A	rna33819	antisense	intergenic	8850	convergent	downstream	no
0	XLOC_298622	TCONS_00299575	EVA1A	rna33818	antisense	intergenic	8850	convergent	downstream	no
0	XLOC_298622	TCONS_00299575	EVA1A	rna33824	antisense	intergenic	8850	convergent	downstream	no
0	XLOC_298622	TCONS_00299575	EVA1A	rna33822	antisense	intergenic	8850	convergent	downstream	no
0	XLOC_298622	TCONS_00299575	EVA1A	rna33820	antisense	intergenic	8850	convergent	downstream	no
1	XLOC_073964	TCONS_00074183	LOC106031559	rna8070	sense	intergenic	320	same_strand	downstream	no
1	XLOC_336929	TCONS_00338010	LOC106047372	rna38946	sense	intergenic	22661	same_strand	downstream	no
0	XLOC_336929	TCONS_00338010	LOC106047371	rna38947	antisense	intergenic	29388	divergent	upstream	no
1	XLOC_317178	TCONS_00318185	FBXO21	rna35678	sense	intergenic	87	same_strand	downstream	yes
0	XLOC_317178	TCONS_00318185	FBXO21	rna35679	sense	intergenic	87	same_strand	downstream	yes
0	XLOC_317178	TCONS_00318185	TESC	rna35677	sense	intergenic	3891	same_strand	upstream	no
1	XLOC_283480	TCONS_00284386	CTDSPL2	rna32111	antisense	intergenic	5173	divergent	upstream	yes
0	XLOC_283480	TCONS_00284386	CASC4	rna32110	antisense	intergenic	7139	convergent	downstream	no
1	XLOC_257151	TCONS_00257974	XK	rna29323	sense	genic	0	nested	intronic	no
1	XLOC_252237	TCONS_00253041	LOC106041902	rna28945	sense	intergenic	18038	same_strand	upstream	no
1	XLOC_090474	TCONS_00090759	CCDC28A	rna9941	antisense	intergenic	23647	divergent	upstream	no
0	XLOC_090474	TCONS_00090759	CCDC28A	rna9942	antisense	intergenic	23990	divergent	upstream	no
1	XLOC_002951	TCONS_00002959	ZCCHC24	rna984	sense	intergenic	9296	same_strand	upstream	no
1	XLOC_126491	TCONS_00126882	RAB12	rna14847	sense	intergenic	155	same_strand	upstream	no
1	XLOC_204850	TCONS_00205518	LOC106038967	rna22945	sense	intergenic	32514	same_strand	downstream	no
1	XLOC_346002	TCONS_00347118	NECAP1	rna40152	antisense	intergenic	527	divergent	upstream	no
0	XLOC_346002	TCONS_00347118	C3AR1	rna40153	sense	intergenic	9081	same_strand	upstream	no
1	XLOC_194442	TCONS_00195060	MTSS1	rna21904	sense	genic	0	nested	intronic	no
1	XLOC_213202	TCONS_00213890	LOC106039517	rna24106	sense	intergenic	789	same_strand	downstream	no
0	XLOC_213202	TCONS_00213890	LOC106039517	rna24105	sense	intergenic	789	same_strand	downstream	no
0	XLOC_213202	TCONS_00213890	LOC106039517	rna24107	sense	intergenic	789	same_strand	downstream	no
1	XLOC_281198	TCONS_00282095	IL10RB	rna31750	sense	intergenic	3195	same_strand	downstream	no
1	XLOC_332204	TCONS_00333257	HS3ST3A1	rna37833	sense	intergenic	1043	same_strand	upstream	no
0	XLOC_332204	TCONS_00333257	LOC106046711	rna37836	antisense	intergenic	8449	divergent	upstream	no
0	XLOC_332204	TCONS_00333257	LOC106046711	rna37835	antisense	intergenic	8449	divergent	upstream	no
0	XLOC_332204	TCONS_00333257	LOC106046711	rna37834	antisense	intergenic	8449	divergent	upstream	no
1	XLOC_330594	TCONS_00331643	LOC106046563	rna37514	antisense	intergenic	16237	convergent	downstream	no
1	XLOC_051633	TCONS_00051791	LOC106030485	rna6033	antisense	intergenic	8089	convergent	downstream	no
1	XLOC_287461	TCONS_00288382	RAP1GAP2	rna32433	antisense	intergenic	42916	convergent	downstream	no
1	XLOC_153821	TCONS_00154319	XRN1	rna17342	sense	intergenic	348	same_strand	downstream	no
0	XLOC_153821	TCONS_00154319	XRN1	rna17343	sense	intergenic	360	same_strand	downstream	no
0	XLOC_153821	TCONS_00154319	XRN1	rna17341	sense	intergenic	6382	same_strand	downstream	no
0	XLOC_153821	TCONS_00154319	XRN1	rna17344	sense	intergenic	361	same_strand	downstream	no
0	XLOC_153821	TCONS_00154319	XRN1	rna17339	sense	intergenic	348	same_strand	downstream	no
0	XLOC_153821	TCONS_00154319	XRN1	rna17340	sense	intergenic	2590	same_strand	downstream	no
0	XLOC_153821	TCONS_00154319	GK5	rna17345	sense	intergenic	2277	same_strand	upstream	no
1	XLOC_129482	TCONS_00129888	WBP4	rna15208	antisense	intergenic	2027	divergent	upstream	no
0	XLOC_129482	TCONS_00129888	ELF1	rna15209	sense	intergenic	5893	same_strand	upstream	yes
1	XLOC_037762	TCONS_00037881	TARBP1	rna4097	sense	intergenic	2157	same_strand	upstream	no
1	XLOC_079582	TCONS_00079823	TCF7L2	rna8744	sense	genic	0	nested	intronic	no
1	XLOC_278253	TCONS_00279144	LOC106043278	rna31460	sense	intergenic	7020	same_strand	upstream	no
1	XLOC_358833	TCONS_00360015	LOC106029523	rna43197	sense	intergenic	3508	same_strand	downstream	no
1	XLOC_010861	TCONS_00010890	ITPK1	rna1760	sense	genic	0	nested	intronic	no
1	XLOC_173407	TCONS_00173964	JAG2	rna19493	sense	intergenic	2259	same_strand	downstream	yes
1	XLOC_007570	TCONS_00007591	RNF103	rna1157	sense	intergenic	388	same_strand	upstream	no
0	XLOC_007570	TCONS_00007591	RNF103	rna1160	sense	intergenic	1203	same_strand	upstream	no
0	XLOC_007570	TCONS_00007591	RNF103	rna1159	sense	intergenic	501	same_strand	upstream	no
0	XLOC_007570	TCONS_00007591	RMND5A	rna1156	antisense	intergenic	4012	divergent	upstream	no
0	XLOC_007570	TCONS_00007591	RNF103	rna1158	sense	intergenic	492	same_strand	upstream	no
0	XLOC_007570	TCONS_00007591	RMND5A	rna1155	antisense	intergenic	3438	divergent	upstream	no
1	XLOC_273211	TCONS_00274086	LOC106042955	rna30896	sense	intergenic	2680	same_strand	upstream	no
0	XLOC_273211	TCONS_00274086	SH3BGRL	rna30897	antisense	intergenic	5287	divergent	upstream	no
0	XLOC_273211	TCONS_00274086	SH3BGRL	rna30899	antisense	intergenic	9573	divergent	upstream	no
0	XLOC_273211	TCONS_00274086	SH3BGRL	rna30898	antisense	intergenic	7187	divergent	upstream	no
1	XLOC_100707	TCONS_00101028	UBA2	rna11263	sense	intergenic	626	same_strand	downstream	no
0	XLOC_100707	TCONS_00101028	WTIP	rna11258	sense	intergenic	6294	same_strand	upstream	no
0	XLOC_100707	TCONS_00101028	UBA2	rna11264	sense	intergenic	626	same_strand	downstream	no
1	XLOC_354611	TCONS_00355774	COG6	rna41689	antisense	intergenic	12977	convergent	downstream	no
1	XLOC_168405	TCONS_00168950	CRADD	rna18868	antisense	genic	0	nested	intronic	no
1	XLOC_139429	TCONS_00139867	EIF4E3	rna16039	antisense	intergenic	722	divergent	upstream	no
0	XLOC_139429	TCONS_00139867	GPR27	rna16040	sense	intergenic	8399	same_strand	upstream	no
1	XLOC_246198	TCONS_00246985	FMO3	rna28287	sense	intergenic	410	same_strand	downstream	no
0	XLOC_246198	TCONS_00246985	FMO3	rna28288	sense	intergenic	411	same_strand	downstream	no
0	XLOC_246198	TCONS_00246985	LOC106041532	rna28286	sense	intergenic	6164	same_strand	upstream	yes
0	XLOC_246198	TCONS_00246985	LOC106041532	rna28285	sense	intergenic	5989	same_strand	upstream	yes
1	XLOC_151558	TCONS_00152041	LOC106036066	rna17055	sense	intergenic	27554	same_strand	upstream	no
1	XLOC_278242	TCONS_00279132	SRPK2	rna31456	sense	genic	0	nested	intronic	no
1	XLOC_330794	TCONS_00331843	SCMH1	rna37523	sense	intergenic	4267	same_strand	upstream	no
0	XLOC_330794	TCONS_00331843	SCMH1	rna37521	sense	intergenic	4286	same_strand	upstream	no
0	XLOC_330794	TCONS_00331843	SCMH1	rna37524	sense	intergenic	4268	same_strand	upstream	no
0	XLOC_330794	TCONS_00331843	SCMH1	rna37517	sense	intergenic	4274	same_strand	upstream	no
0	XLOC_330794	TCONS_00331843	SCMH1	rna37519	sense	intergenic	4283	same_strand	upstream	no
0	XLOC_330794	TCONS_00331843	SCMH1	rna37522	sense	intergenic	4300	same_strand	upstream	no
0	XLOC_330794	TCONS_00331843	SCMH1	rna37520	sense	intergenic	4284	same_strand	upstream	no
0	XLOC_330794	TCONS_00331843	SCMH1	rna37518	sense	intergenic	4283	same_strand	upstream	no
0	XLOC_330794	TCONS_00331843	SCMH1	rna37525	sense	intergenic	4268	same_strand	upstream	no
1	XLOC_027334	TCONS_00027416	ELMSAN1	rna2990	sense	genic	0	nested	intronic	no
0	XLOC_027334	TCONS_00027416	ELMSAN1	rna2991	sense	genic	0	nested	intronic	no
1	XLOC_027261	TCONS_00027342	DPF3	rna2946	sense	genic	0	nested	intronic	no
1	XLOC_044948	TCONS_00045090	LOC106030202	rna5447	antisense	intergenic	8529	divergent	upstream	no
1	XLOC_224919	TCONS_00225623	SPINK4	rna25627	sense	intergenic	5148	same_strand	upstream	no
1	XLOC_322323	TCONS_00323350	PHYH	rna36825	sense	intergenic	331	same_strand	upstream	yes
0	XLOC_322323	TCONS_00323350	SEPHS1	rna36823	sense	intergenic	3870	same_strand	downstream	no
0	XLOC_322323	TCONS_00323350	SEPHS1	rna36824	sense	intergenic	3935	same_strand	downstream	no
1	XLOC_082926	TCONS_00083179	PLD1	rna8930	sense	intergenic	20038	same_strand	upstream	no
1	XLOC_026291	TCONS_00026370	EYA2	rna2660	antisense	genic	0	nested	intronic	yes
0	XLOC_026291	TCONS_00026370	EYA2	rna2659	antisense	genic	0	nested	intronic	yes
0	XLOC_026291	TCONS_00026370	EYA2	rna2658	antisense	genic	0	nested	intronic	yes
1	XLOC_303726	TCONS_00304697	BCL6	rna34381	antisense	intergenic	14031	divergent	upstream	no
1	XLOC_222724	TCONS_00223424	LOC106040010	rna25097	sense	intergenic	23497	same_strand	downstream	no
0	XLOC_222724	TCONS_00223424	LOC106040010	rna25099	sense	intergenic	23497	same_strand	downstream	no
0	XLOC_222724	TCONS_00223424	LOC106040010	rna25096	sense	intergenic	23497	same_strand	downstream	no
0	XLOC_222724	TCONS_00223424	LOC106040010	rna25098	sense	intergenic	23497	same_strand	downstream	no
0	XLOC_222724	TCONS_00223424	LOC106040010	rna25095	sense	intergenic	23497	same_strand	downstream	no
0	XLOC_222724	TCONS_00223424	LOC106040010	rna25100	sense	intergenic	23497	same_strand	downstream	no
0	XLOC_222724	TCONS_00223424	LOC106040010	rna25094	sense	intergenic	23497	same_strand	downstream	no
1	XLOC_064267	TCONS_00064460	LOC106030871	rna6710	antisense	genic	0	nested	intronic	no
0	XLOC_064267	TCONS_00064460	LOC106030871	rna6706	antisense	genic	0	nested	intronic	no
0	XLOC_064267	TCONS_00064460	LOC106030871	rna6712	antisense	genic	0	nested	intronic	no
0	XLOC_064267	TCONS_00064460	LOC106030871	rna6709	antisense	genic	0	nested	intronic	no
0	XLOC_064267	TCONS_00064460	LOC106030871	rna6705	antisense	genic	0	nested	intronic	no
0	XLOC_064267	TCONS_00064460	LOC106030871	rna6707	antisense	genic	0	nested	intronic	no
0	XLOC_064267	TCONS_00064460	LOC106030871	rna6708	antisense	genic	0	nested	intronic	no
0	XLOC_064267	TCONS_00064460	LOC106030871	rna6711	antisense	genic	0	nested	intronic	no
1	XLOC_279261	TCONS_00280154	TOPAZ1	rna31545	sense	intergenic	8080	same_strand	upstream	no
0	XLOC_279261	TCONS_00280154	TOPAZ1	rna31546	sense	intergenic	8080	same_strand	upstream	no
1	XLOC_047862	TCONS_00048010	TBC1D5	rna5549	sense	genic	0	nested	intronic	no
0	XLOC_047862	TCONS_00048010	TBC1D5	rna5550	sense	genic	0	nested	intronic	no
0	XLOC_047862	TCONS_00048010	TBC1D5	rna5548	sense	genic	0	nested	intronic	no
0	XLOC_047862	TCONS_00048010	TBC1D5	rna5553	sense	genic	0	nested	intronic	no
0	XLOC_047862	TCONS_00048010	TBC1D5	rna5552	sense	genic	0	nested	intronic	no
1	XLOC_164314	TCONS_00164844	LOC106036685	rna18502	sense	intergenic	367	same_strand	downstream	no
0	XLOC_164314	TCONS_00164844	LOC106036685	rna18503	sense	intergenic	1602	same_strand	downstream	no
1	XLOC_034942	TCONS_00035050	DISC1	rna4050	sense	intergenic	4610	same_strand	upstream	no
0	XLOC_034942	TCONS_00035050	DISC1	rna4047	sense	intergenic	4610	same_strand	upstream	no
0	XLOC_034942	TCONS_00035050	DISC1	rna4051	sense	intergenic	4610	same_strand	upstream	no
0	XLOC_034942	TCONS_00035050	DISC1	rna4048	sense	intergenic	4610	same_strand	upstream	no
0	XLOC_034942	TCONS_00035050	DISC1	rna4049	sense	intergenic	4610	same_strand	upstream	no
1	XLOC_149846	TCONS_00150326	TEX10	rna16951	sense	genic	0	nested	intronic	no
0	XLOC_149846	TCONS_00150326	LOC106036001	rna16948	sense	intergenic	6589	same_strand	downstream	no
0	XLOC_149846	TCONS_00150326	LOC106036001	rna16949	sense	intergenic	6591	same_strand	downstream	no
0	XLOC_149846	TCONS_00150326	LOC106036001	rna16947	sense	intergenic	6591	same_strand	downstream	no
1	XLOC_256525	TCONS_00257345	LOC106042163	rna29300	antisense	intergenic	18049	convergent	downstream	no
1	XLOC_310465	TCONS_00311457	LOC106045194	rna35065	antisense	intergenic	36085	divergent	upstream	no
1	XLOC_209712	TCONS_00210389	UBE2G2	rna23412	sense	intergenic	870	same_strand	upstream	no
0	XLOC_209712	TCONS_00210389	LOC106039159	rna23411	sense	intergenic	3220	same_strand	downstream	no
1	XLOC_057010	TCONS_00057182	MMP16	rna6126	antisense	intergenic	53425	convergent	downstream	no
0	XLOC_057010	TCONS_00057182	MMP16	rna6127	antisense	intergenic	53425	convergent	downstream	no
1	XLOC_033386	TCONS_00033491	MSRB3	rna3826	sense	intergenic	3287	same_strand	downstream	yes
1	XLOC_194466	TCONS_00195086	TMEM65	rna21914	sense	genic	0	nested	intronic	no
0	XLOC_194466	TCONS_00195086	TMEM65	rna21913	sense	genic	0	nested	intronic	no
1	XLOC_103608	TCONS_00103950	LOC106033649	rna12020	antisense	intergenic	76613	divergent	upstream	no
0	XLOC_103608	TCONS_00103950	LOC106033649	rna12021	antisense	intergenic	76788	divergent	upstream	no
1	XLOC_347575	TCONS_00348700	BNC2	rna40378	antisense	genic	0	nested	intronic	no
1	XLOC_238757	TCONS_00239523	AUTS2	rna27274	antisense	genic	0	nested	intronic	no
1	XLOC_012107	TCONS_00012145	FAM53A	rna1218	sense	intergenic	3797	same_strand	downstream	no
0	XLOC_012107	TCONS_00012145	FAM53A	rna1219	sense	intergenic	3797	same_strand	downstream	no
0	XLOC_012107	TCONS_00012145	FAM53A	rna1220	sense	intergenic	3797	same_strand	downstream	no
1	XLOC_003862	TCONS_00003871	PDE6C	rna207	antisense	genic	0	nested	intronic	no
0	XLOC_003862	TCONS_00003871	FRA10AC1	rna208	sense	intergenic	1566	same_strand	downstream	no
0	XLOC_003862	TCONS_00003871	FRA10AC1	rna209	sense	intergenic	1566	same_strand	downstream	no
1	XLOC_262939	TCONS_00263775	GUCY2F	rna29772	sense	intergenic	2368	same_strand	upstream	no
0	XLOC_262939	TCONS_00263775	LOC106042386	rna29773	antisense	intergenic	6912	convergent	downstream	no
1	XLOC_084464	TCONS_00084722	LOC106032378	rna9481	antisense	intergenic	3746	convergent	downstream	no
0	XLOC_084464	TCONS_00084722	LOC106032378	rna9482	antisense	intergenic	3746	convergent	downstream	no
1	XLOC_246458	TCONS_00247245	LOC106041633	rna28374	antisense	intergenic	15638	divergent	upstream	no
1	XLOC_209712	TCONS_00210388	UBE2G2	rna23412	sense	intergenic	870	same_strand	upstream	no
0	XLOC_209712	TCONS_00210388	LOC106039159	rna23411	sense	intergenic	3016	same_strand	downstream	no
1	XLOC_157170	TCONS_00157681	SUB1	rna17691	sense	intergenic	33085	same_strand	downstream	no
1	XLOC_276704	TCONS_00277589	LOC106043230	rna31385	sense	intergenic	6160	same_strand	upstream	no
1	XLOC_023830	TCONS_00023903	LOC106041762	rna2776	antisense	intergenic	8779	divergent	upstream	no
0	XLOC_023830	TCONS_00023903	BCAS1	rna2779	antisense	intergenic	9148	convergent	downstream	no
0	XLOC_023830	TCONS_00023903	BCAS1	rna2778	antisense	intergenic	9148	convergent	downstream	no
0	XLOC_023830	TCONS_00023903	BCAS1	rna2777	antisense	intergenic	9148	convergent	downstream	no
0	XLOC_023830	TCONS_00023903	BCAS1	rna2780	antisense	intergenic	9148	convergent	downstream	no
1	XLOC_055263	TCONS_00055429	LOC106030660	rna6200	sense	intergenic	15232	same_strand	upstream	no
0	XLOC_055263	TCONS_00055429	HEY1	rna6201	sense	intergenic	19644	same_strand	upstream	yes
1	XLOC_251261	TCONS_00252063	ARPP21	rna28735	antisense	genic	0	nested	intronic	no
0	XLOC_251261	TCONS_00252063	ARPP21	rna28738	antisense	genic	0	nested	intronic	no
0	XLOC_251261	TCONS_00252063	ARPP21	rna28736	antisense	genic	0	nested	intronic	no
0	XLOC_251261	TCONS_00252063	ARPP21	rna28739	antisense	genic	0	nested	intronic	no
0	XLOC_251261	TCONS_00252063	ARPP21	rna28737	antisense	genic	0	nested	intronic	no
0	XLOC_251261	TCONS_00252063	ARPP21	rna28742	antisense	genic	0	nested	intronic	no
0	XLOC_251261	TCONS_00252063	ARPP21	rna28740	antisense	genic	0	nested	intronic	no
0	XLOC_251261	TCONS_00252063	ARPP21	rna28744	antisense	genic	0	nested	intronic	no
0	XLOC_251261	TCONS_00252063	ARPP21	rna28741	antisense	genic	0	nested	intronic	no
0	XLOC_251261	TCONS_00252063	ARPP21	rna28743	antisense	genic	0	nested	intronic	no
1	XLOC_307426	TCONS_00308412	LOC106045074	rna34791	sense	intergenic	12969	same_strand	downstream	no
0	XLOC_307426	TCONS_00308412	XPC	rna34792	antisense	intergenic	15372	divergent	upstream	yes
1	XLOC_087778	TCONS_00088055	NCOA7	rna9770	sense	genic	0	nested	intronic	no
1	XLOC_139628	TCONS_00140066	SLC25A20	rna15883	antisense	intergenic	3873	convergent	downstream	yes
1	XLOC_084868	TCONS_00085127	LOC106032300	rna9568	sense	intergenic	3136	same_strand	downstream	no
1	XLOC_206933	TCONS_00207602	PLAG1	rna23010	sense	genic	0	nested	intronic	yes
0	XLOC_206933	TCONS_00207602	PLAG1	rna23011	sense	intergenic	8657	same_strand	upstream	yes
0	XLOC_206933	TCONS_00207602	PLAG1	rna23012	sense	intergenic	8657	same_strand	upstream	yes
1	XLOC_026991	TCONS_00027072	RBM38	rna2834	antisense	intergenic	3744	convergent	downstream	no
1	XLOC_094374	TCONS_00094669	SHROOM1	rna10261	sense	intergenic	639	same_strand	downstream	no
0	XLOC_094374	TCONS_00094669	SEPT8	rna10266	sense	intergenic	4003	same_strand	upstream	no
0	XLOC_094374	TCONS_00094669	SEPT8	rna10267	sense	intergenic	9585	same_strand	upstream	no
0	XLOC_094374	TCONS_00094669	SOWAHA	rna10263	antisense	intergenic	1212	convergent	downstream	no
0	XLOC_094374	TCONS_00094669	SEPT8	rna10264	sense	intergenic	4001	same_strand	upstream	no
0	XLOC_094374	TCONS_00094669	SEPT8	rna10265	sense	intergenic	4002	same_strand	upstream	no
1	XLOC_336906	TCONS_00337985	LOC106047369	rna38978	antisense	intergenic	69351	divergent	upstream	no
1	XLOC_043808	TCONS_00043948	ITGA4	rna5148	antisense	intergenic	11709	divergent	upstream	no
1	XLOC_337155	TCONS_00338241	LOC106047369	rna38978	sense	intergenic	33893	same_strand	upstream	no
1	XLOC_243407	TCONS_00244189	MYO1C	rna27888	sense	intergenic	1834	same_strand	upstream	no
0	XLOC_243407	TCONS_00244189	INPP5K	rna27887	sense	intergenic	6954	same_strand	downstream	no
1	XLOC_358265	TCONS_00359441	LOC106049848	rna42785	sense	genic	0	nested	intronic	yes
0	XLOC_358265	TCONS_00359441	LOC106049847	rna42784	sense	intergenic	3398	same_strand	upstream	yes
0	XLOC_358265	TCONS_00359441	LOC106049849	rna42786	antisense	intergenic	4371	divergent	upstream	yes
1	XLOC_303438	TCONS_00304407	SNX5	rna34288	sense	intergenic	15664	same_strand	downstream	no
1	XLOC_263351	TCONS_00264190	ANXA5	rna29886	sense	intergenic	1037	same_strand	downstream	no
0	XLOC_263351	TCONS_00264190	ANXA5	rna29887	sense	intergenic	2616	same_strand	downstream	no
0	XLOC_263351	TCONS_00264190	ANXA5	rna29889	sense	intergenic	1037	same_strand	downstream	no
0	XLOC_263351	TCONS_00264190	ANXA5	rna29888	sense	intergenic	1037	same_strand	downstream	no
1	XLOC_056849	TCONS_00057020	LOC106030540	rna6123	antisense	intergenic	16114	convergent	downstream	yes
1	XLOC_141950	TCONS_00142399	CCDC146	rna16120	antisense	genic	0	nested	intronic	no
0	XLOC_141950	TCONS_00142399	GSAP	rna16123	sense	intergenic	3107	same_strand	downstream	no
0	XLOC_141950	TCONS_00142399	GSAP	rna16124	sense	intergenic	8048	same_strand	downstream	no
0	XLOC_141950	TCONS_00142399	GSAP	rna16122	sense	intergenic	3106	same_strand	downstream	no
1	XLOC_321259	TCONS_00322286	SCNN1B	rna36565	antisense	intergenic	122	convergent	downstream	no
0	XLOC_321259	TCONS_00322286	COG7	rna36564	sense	intergenic	1021	same_strand	downstream	no
1	XLOC_087256	TCONS_00087532	LOC106032403	rna9703	sense	intergenic	82372	same_strand	downstream	no
1	XLOC_136483	TCONS_00136908	AKIRIN2	rna15773	antisense	intergenic	12322	divergent	upstream	no
0	XLOC_136483	TCONS_00136908	LOC106035389	rna15774	antisense	intergenic	12721	divergent	upstream	no
1	XLOC_240980	TCONS_00241756	LITAF	rna27536	antisense	intergenic	9687	divergent	upstream	no
1	XLOC_165388	TCONS_00165922	VIPR1	rna18678	antisense	genic	0	nested	intronic	yes
1	XLOC_091436	TCONS_00091724	LOC106032552	rna10102	antisense	intergenic	4830	convergent	downstream	no
1	XLOC_201356	TCONS_00201990	LOC106038808	rna22602	antisense	intergenic	6957	convergent	downstream	no
0	XLOC_201356	TCONS_00201990	MIPOL1	rna22599	sense	intergenic	7374	same_strand	downstream	no
0	XLOC_201356	TCONS_00201990	MIPOL1	rna22600	sense	intergenic	7374	same_strand	downstream	no
0	XLOC_201356	TCONS_00201990	MIPOL1	rna22591	sense	intergenic	7374	same_strand	downstream	no
0	XLOC_201356	TCONS_00201990	MIPOL1	rna22593	sense	intergenic	7374	same_strand	downstream	no
0	XLOC_201356	TCONS_00201990	MIPOL1	rna22592	sense	intergenic	7374	same_strand	downstream	no
0	XLOC_201356	TCONS_00201990	MIPOL1	rna22601	sense	intergenic	7374	same_strand	downstream	no
0	XLOC_201356	TCONS_00201990	MIPOL1	rna22594	sense	intergenic	7374	same_strand	downstream	no
1	XLOC_207700	TCONS_00208374	LOC106039016	rna23086	sense	intergenic	6893	same_strand	upstream	no
0	XLOC_207700	TCONS_00208374	LOC106039016	rna23084	sense	intergenic	6893	same_strand	upstream	no
0	XLOC_207700	TCONS_00208374	LOC106039016	rna23085	sense	intergenic	6893	same_strand	upstream	no
1	XLOC_317845	TCONS_00318856	KANK3	rna35898	antisense	intergenic	3667	divergent	upstream	no
1	XLOC_142234	TCONS_00142685	SEMA3C	rna16154	sense	intergenic	16082	same_strand	upstream	no
0	XLOC_142234	TCONS_00142685	SEMA3C	rna16155	sense	intergenic	17030	same_strand	upstream	no
1	XLOC_180913	TCONS_00181504	ABHD3	rna20087	antisense	intergenic	1881	divergent	upstream	no
1	XLOC_277626	TCONS_00278514	ZFAT	rna31439	sense	genic	0	nested	intronic	no
1	XLOC_133960	TCONS_00134375	CPQ	rna15519	sense	genic	0	nested	intronic	no
0	XLOC_133960	TCONS_00134375	CPQ	rna15526	sense	intergenic	9058	same_strand	upstream	no
0	XLOC_133960	TCONS_00134375	CPQ	rna15524	sense	intergenic	9058	same_strand	upstream	no
0	XLOC_133960	TCONS_00134375	CPQ	rna15525	sense	intergenic	9058	same_strand	upstream	no
0	XLOC_133960	TCONS_00134375	CPQ	rna15521	sense	intergenic	9058	same_strand	upstream	no
0	XLOC_133960	TCONS_00134375	CPQ	rna15522	sense	intergenic	9058	same_strand	upstream	no
0	XLOC_133960	TCONS_00134375	CPQ	rna15520	sense	intergenic	9058	same_strand	upstream	no
0	XLOC_133960	TCONS_00134375	CPQ	rna15523	sense	intergenic	9058	same_strand	upstream	no
1	XLOC_074634	TCONS_00074857	LIN9	rna8140	sense	intergenic	2135	same_strand	downstream	no
0	XLOC_074634	TCONS_00074857	LIN9	rna8141	sense	intergenic	2135	same_strand	downstream	no
0	XLOC_074634	TCONS_00074857	LIN9	rna8142	sense	intergenic	2135	same_strand	downstream	no
1	XLOC_269820	TCONS_00270680	BOD1	rna30491	sense	intergenic	2912	same_strand	upstream	no
1	XLOC_251203	TCONS_00252002	TRANK1	rna28726	sense	intergenic	4292	same_strand	downstream	yes
1	XLOC_356480	TCONS_00357651	LOC106049350	rna42123	sense	intergenic	2924	same_strand	upstream	no
0	XLOC_356480	TCONS_00357651	LOC106049362	rna42122	antisense	intergenic	8649	divergent	upstream	no
0	XLOC_356480	TCONS_00357651	LOC106049351	rna42124	sense	intergenic	7399	same_strand	upstream	no
1	XLOC_237673	TCONS_00238427	LOC106041016	rna27163	sense	intergenic	678	same_strand	downstream	no
0	XLOC_237673	TCONS_00238427	LOC106041016	rna27165	sense	intergenic	678	same_strand	downstream	no
0	XLOC_237673	TCONS_00238427	LOC106041016	rna27167	sense	intergenic	678	same_strand	downstream	no
0	XLOC_237673	TCONS_00238427	LOC106041016	rna27164	sense	intergenic	678	same_strand	downstream	no
0	XLOC_237673	TCONS_00238427	LOC106041016	rna27166	sense	intergenic	678	same_strand	downstream	no
1	XLOC_262843	TCONS_00263679	MOGAT2	rna29746	antisense	intergenic	2168	convergent	downstream	no
1	XLOC_292762	TCONS_00293690	GNPNAT1	rna33031	antisense	intergenic	945	divergent	upstream	yes
0	XLOC_292762	TCONS_00293690	FERMT2	rna33030	antisense	intergenic	5700	convergent	downstream	yes
0	XLOC_292762	TCONS_00293690	GNPNAT1	rna33033	antisense	intergenic	957	divergent	upstream	yes
0	XLOC_292762	TCONS_00293690	GNPNAT1	rna33032	antisense	intergenic	957	divergent	upstream	yes
1	XLOC_322535	TCONS_00323562	SEC61A2	rna36845	sense	genic	0	nested	intronic	yes
0	XLOC_322535	TCONS_00323562	SEC61A2	rna36844	sense	genic	0	nested	intronic	yes
0	XLOC_322535	TCONS_00323562	NUDT5	rna36840	antisense	intergenic	8805	convergent	downstream	no
0	XLOC_322535	TCONS_00323562	NUDT5	rna36841	antisense	intergenic	8805	convergent	downstream	no
0	XLOC_322535	TCONS_00323562	NUDT5	rna36835	antisense	intergenic	8805	convergent	downstream	no
0	XLOC_322535	TCONS_00323562	NUDT5	rna36836	antisense	intergenic	8805	convergent	downstream	no
0	XLOC_322535	TCONS_00323562	NUDT5	rna36842	antisense	intergenic	8805	convergent	downstream	no
0	XLOC_322535	TCONS_00323562	NUDT5	rna36837	antisense	intergenic	8805	convergent	downstream	no
0	XLOC_322535	TCONS_00323562	NUDT5	rna36839	antisense	intergenic	8805	convergent	downstream	no
0	XLOC_322535	TCONS_00323562	NUDT5	rna36838	antisense	intergenic	8805	convergent	downstream	no
0	XLOC_322535	TCONS_00323562	SEC61A2	rna36843	sense	genic	0	nested	intronic	yes
1	XLOC_127854	TCONS_00128250	PPP4R1	rna14858	sense	genic	0	nested	intronic	no
0	XLOC_127854	TCONS_00128250	PPP4R1	rna14872	sense	intergenic	9334	same_strand	upstream	no
0	XLOC_127854	TCONS_00128250	PPP4R1	rna14863	sense	genic	0	nested	intronic	no
0	XLOC_127854	TCONS_00128250	PPP4R1	rna14867	sense	genic	0	nested	intronic	no
0	XLOC_127854	TCONS_00128250	PPP4R1	rna14869	sense	intergenic	1385	same_strand	upstream	no
0	XLOC_127854	TCONS_00128250	PPP4R1	rna14871	sense	intergenic	7143	same_strand	upstream	no
0	XLOC_127854	TCONS_00128250	PPP4R1	rna14870	sense	intergenic	3449	same_strand	upstream	no
0	XLOC_127854	TCONS_00128250	PPP4R1	rna14865	sense	genic	0	nested	intronic	no
0	XLOC_127854	TCONS_00128250	PPP4R1	rna14866	sense	genic	0	nested	intronic	no
0	XLOC_127854	TCONS_00128250	PPP4R1	rna14859	sense	genic	0	nested	intronic	no
0	XLOC_127854	TCONS_00128250	PPP4R1	rna14868	sense	genic	0	nested	intronic	no
0	XLOC_127854	TCONS_00128250	PPP4R1	rna14860	sense	genic	0	nested	intronic	no
0	XLOC_127854	TCONS_00128250	PPP4R1	rna14864	sense	genic	0	nested	intronic	no
0	XLOC_127854	TCONS_00128250	PPP4R1	rna14862	sense	genic	0	nested	intronic	no
0	XLOC_127854	TCONS_00128250	PPP4R1	rna14861	sense	genic	0	nested	intronic	no
1	XLOC_198065	TCONS_00198694	CAMK2D	rna22253	sense	intergenic	2003	same_strand	upstream	no
0	XLOC_198065	TCONS_00198694	CAMK2D	rna22254	sense	intergenic	2018	same_strand	upstream	no
0	XLOC_198065	TCONS_00198694	CAMK2D	rna22255	sense	intergenic	2019	same_strand	upstream	no
0	XLOC_198065	TCONS_00198694	CAMK2D	rna22256	sense	intergenic	2020	same_strand	upstream	no
1	XLOC_187379	TCONS_00187980	LOC106038184	rna21227	sense	intergenic	56	same_strand	downstream	no
0	XLOC_187379	TCONS_00187980	LOC106038129	rna21228	sense	intergenic	6020	same_strand	upstream	yes
0	XLOC_187379	TCONS_00187980	LOC106038129	rna21229	sense	intergenic	8864	same_strand	upstream	yes
1	XLOC_027331	TCONS_00027413	ELMSAN1	rna2990	sense	genic	0	nested	intronic	no
0	XLOC_027331	TCONS_00027413	ELMSAN1	rna2992	sense	intergenic	1498	same_strand	upstream	no
0	XLOC_027331	TCONS_00027413	ELMSAN1	rna2991	sense	genic	0	nested	intronic	no
1	XLOC_341821	TCONS_00342924	WASL	rna39421	antisense	intergenic	11191	divergent	upstream	no
1	XLOC_145578	TCONS_00146044	GABRG3	rna16458	sense	intergenic	2843	same_strand	downstream	no
0	XLOC_145578	TCONS_00146044	GABRG3	rna16459	sense	intergenic	3198	same_strand	downstream	no
1	XLOC_289550	TCONS_00290473	DAPL1	rna32632	sense	intergenic	6281	same_strand	downstream	yes
0	XLOC_289550	TCONS_00290473	DAPL1	rna32633	sense	intergenic	6281	same_strand	downstream	yes
1	XLOC_011010	TCONS_00011040	LOC106036756	rna1821	antisense	intergenic	323	convergent	downstream	no
0	XLOC_011010	TCONS_00011040	CALM1	rna1820	antisense	intergenic	2764	divergent	upstream	no
1	XLOC_054630	TCONS_00054796	MMP16	rna6126	sense	intergenic	32241	same_strand	downstream	no
0	XLOC_054630	TCONS_00054796	MMP16	rna6127	sense	intergenic	32241	same_strand	downstream	no
1	XLOC_095157	TCONS_00095454	CLINT1	rna10623	antisense	intergenic	90203	divergent	upstream	no
1	XLOC_358863	TCONS_00360046	LOC106029577	rna43261	antisense	intergenic	4461	convergent	downstream	no
1	XLOC_234971	TCONS_00235718	SBF2	rna26916	sense	intergenic	8680	same_strand	upstream	no
1	XLOC_033386	TCONS_00033494	MSRB3	rna3826	sense	intergenic	3296	same_strand	downstream	yes
1	XLOC_262646	TCONS_00263481	PRKRIR	rna29755	antisense	intergenic	2280	divergent	upstream	no
0	XLOC_262646	TCONS_00263481	LOC106042377	rna29759	sense	intergenic	9546	same_strand	upstream	no
0	XLOC_262646	TCONS_00263481	LOC106042377	rna29763	sense	intergenic	9546	same_strand	upstream	no
0	XLOC_262646	TCONS_00263481	LOC106042377	rna29757	sense	intergenic	9546	same_strand	upstream	no
0	XLOC_262646	TCONS_00263481	LOC106042377	rna29764	sense	intergenic	9546	same_strand	upstream	no
0	XLOC_262646	TCONS_00263481	LOC106042377	rna29758	sense	intergenic	9546	same_strand	upstream	no
0	XLOC_262646	TCONS_00263481	LOC106042385	rna29756	antisense	intergenic	7149	convergent	downstream	no
0	XLOC_262646	TCONS_00263481	LOC106042377	rna29761	sense	intergenic	9546	same_strand	upstream	no
0	XLOC_262646	TCONS_00263481	LOC106042377	rna29760	sense	intergenic	9546	same_strand	upstream	no
0	XLOC_262646	TCONS_00263481	LOC106042377	rna29762	sense	intergenic	9546	same_strand	upstream	no
1	XLOC_066459	TCONS_00066657	AEBP2	rna6749	sense	intergenic	19731	same_strand	downstream	no
1	XLOC_102521	TCONS_00102849	MAD1L1	rna11924	antisense	genic	0	nested	intronic	no
0	XLOC_102521	TCONS_00102849	MAD1L1	rna11926	antisense	genic	0	nested	intronic	no
0	XLOC_102521	TCONS_00102849	MAD1L1	rna11919	antisense	genic	0	nested	intronic	no
0	XLOC_102521	TCONS_00102849	MAD1L1	rna11931	antisense	genic	0	nested	intronic	no
0	XLOC_102521	TCONS_00102849	MAD1L1	rna11925	antisense	genic	0	nested	intronic	no
0	XLOC_102521	TCONS_00102849	MAD1L1	rna11927	antisense	genic	0	nested	intronic	no
0	XLOC_102521	TCONS_00102849	MAD1L1	rna11923	antisense	genic	0	nested	intronic	no
0	XLOC_102521	TCONS_00102849	MAD1L1	rna11934	antisense	genic	0	nested	intronic	no
0	XLOC_102521	TCONS_00102849	MAD1L1	rna11916	antisense	genic	0	nested	intronic	no
0	XLOC_102521	TCONS_00102849	MAD1L1	rna11918	antisense	genic	0	nested	intronic	no
0	XLOC_102521	TCONS_00102849	MAD1L1	rna11929	antisense	genic	0	nested	intronic	no
0	XLOC_102521	TCONS_00102849	MAD1L1	rna11911	antisense	genic	0	nested	intronic	no
0	XLOC_102521	TCONS_00102849	MAD1L1	rna11915	antisense	genic	0	nested	intronic	no
0	XLOC_102521	TCONS_00102849	MAD1L1	rna11917	antisense	genic	0	nested	intronic	no
0	XLOC_102521	TCONS_00102849	MAD1L1	rna11922	antisense	genic	0	nested	intronic	no
0	XLOC_102521	TCONS_00102849	MAD1L1	rna11932	antisense	genic	0	nested	intronic	no
0	XLOC_102521	TCONS_00102849	MAD1L1	rna11921	antisense	genic	0	nested	intronic	no
0	XLOC_102521	TCONS_00102849	MAD1L1	rna11912	antisense	genic	0	nested	intronic	no
0	XLOC_102521	TCONS_00102849	MAD1L1	rna11914	antisense	genic	0	nested	intronic	no
0	XLOC_102521	TCONS_00102849	MAD1L1	rna11920	antisense	genic	0	nested	intronic	no
0	XLOC_102521	TCONS_00102849	MAD1L1	rna11933	antisense	genic	0	nested	intronic	no
0	XLOC_102521	TCONS_00102849	MAD1L1	rna11928	antisense	genic	0	nested	intronic	no
0	XLOC_102521	TCONS_00102849	MAD1L1	rna11913	antisense	genic	0	nested	intronic	no
0	XLOC_102521	TCONS_00102849	MAD1L1	rna11930	antisense	genic	0	nested	intronic	no
1	XLOC_045976	TCONS_00046122	RARB	rna5617	sense	genic	0	nested	intronic	no
0	XLOC_045976	TCONS_00046122	RARB	rna5619	sense	genic	0	nested	intronic	no
0	XLOC_045976	TCONS_00046122	RARB	rna5618	sense	genic	0	nested	intronic	no
1	XLOC_235511	TCONS_00236260	ZNF143	rna26925	sense	intergenic	4968	same_strand	upstream	no
0	XLOC_235511	TCONS_00236260	IPO7	rna26927	sense	intergenic	6259	same_strand	downstream	no
0	XLOC_235511	TCONS_00236260	ZNF143	rna26924	sense	intergenic	4968	same_strand	upstream	no
0	XLOC_235511	TCONS_00236260	ZNF143	rna26926	sense	intergenic	4968	same_strand	upstream	no
1	XLOC_237520	TCONS_00238274	LOC106040997	rna27110	sense	intergenic	5621	same_strand	upstream	no
1	XLOC_352146	TCONS_00353285	LOC106048752	rna41239	antisense	intergenic	7492	convergent	downstream	yes
1	XLOC_357985	TCONS_00359157	LOC106049760	rna42671	sense	intergenic	392	same_strand	upstream	no
0	XLOC_357985	TCONS_00359157	LOC106049744	rna42666	antisense	intergenic	9536	divergent	upstream	no
0	XLOC_357985	TCONS_00359157	LOC106049762	rna42669	sense	intergenic	1845	same_strand	downstream	no
0	XLOC_357985	TCONS_00359157	LOC106049762	rna42668	sense	intergenic	1845	same_strand	downstream	no
0	XLOC_357985	TCONS_00359157	LOC106049762	rna42667	sense	intergenic	1845	same_strand	downstream	no
0	XLOC_357985	TCONS_00359157	LOC106049762	rna42670	sense	intergenic	1845	same_strand	downstream	no
1	XLOC_037298	TCONS_00037411	PRKCE	rna4559	antisense	genic	0	nested	intronic	no
0	XLOC_037298	TCONS_00037411	PRKCE	rna4560	antisense	genic	0	nested	intronic	no
0	XLOC_037298	TCONS_00037411	PRKCE	rna4558	antisense	genic	0	nested	intronic	no
0	XLOC_037298	TCONS_00037411	PRKCE	rna4557	antisense	genic	0	nested	intronic	no
1	XLOC_059776	TCONS_00059953	MBOAT2	rna6407	antisense	intergenic	13939	divergent	upstream	no
1	XLOC_237635	TCONS_00238389	ZEB2	rna27159	antisense	intergenic	1185	divergent	upstream	yes
0	XLOC_237635	TCONS_00238389	ZEB2	rna27160	antisense	intergenic	3942	divergent	upstream	yes
0	XLOC_237635	TCONS_00238389	ZEB2	rna27158	antisense	intergenic	3943	divergent	upstream	yes
0	XLOC_237635	TCONS_00238389	ZEB2	rna27161	antisense	intergenic	3943	divergent	upstream	yes
1	XLOC_195208	TCONS_00195830	LOC106038460	rna21894	antisense	intergenic	17206	convergent	downstream	no
1	XLOC_188780	TCONS_00189383	TNFRSF21	rna21339	sense	intergenic	21209	same_strand	upstream	no
1	XLOC_234463	TCONS_00235207	CDH4	rna26809	sense	genic	0	nested	intronic	yes
0	XLOC_234463	TCONS_00235207	CDH4	rna26802	sense	genic	0	nested	intronic	yes
0	XLOC_234463	TCONS_00235207	CDH4	rna26807	sense	genic	0	nested	intronic	yes
0	XLOC_234463	TCONS_00235207	CDH4	rna26804	sense	genic	0	nested	intronic	yes
0	XLOC_234463	TCONS_00235207	CDH4	rna26803	sense	genic	0	nested	intronic	yes
0	XLOC_234463	TCONS_00235207	CDH4	rna26801	sense	genic	0	nested	intronic	yes
0	XLOC_234463	TCONS_00235207	CDH4	rna26808	sense	genic	0	nested	intronic	yes
0	XLOC_234463	TCONS_00235207	CDH4	rna26805	sense	genic	0	nested	intronic	yes
0	XLOC_234463	TCONS_00235207	CDH4	rna26799	sense	genic	0	nested	intronic	yes
0	XLOC_234463	TCONS_00235207	CDH4	rna26800	sense	genic	0	nested	intronic	yes
0	XLOC_234463	TCONS_00235207	CDH4	rna26806	sense	genic	0	nested	intronic	yes
1	XLOC_292897	TCONS_00293826	LOC106044135	rna33165	antisense	intergenic	10002	divergent	upstream	no
0	XLOC_292897	TCONS_00293826	LOC106044137	rna33167	sense	intergenic	19414	same_strand	upstream	no
0	XLOC_292897	TCONS_00293826	LOC106044135	rna33166	antisense	intergenic	10088	divergent	upstream	no
1	XLOC_332278	TCONS_00333334	LOC106046794	rna37880	sense	intergenic	650	same_strand	upstream	no
0	XLOC_332278	TCONS_00333334	HGS	rna37881	sense	intergenic	4820	same_strand	upstream	no
0	XLOC_332278	TCONS_00333334	TMC6	rna37879	sense	intergenic	2017	same_strand	downstream	no
1	XLOC_193977	TCONS_00194594	FAM49B	rna21864	sense	intergenic	14899	same_strand	upstream	no
0	XLOC_193977	TCONS_00194594	FAM49B	rna21862	sense	intergenic	14899	same_strand	upstream	no
0	XLOC_193977	TCONS_00194594	FAM49B	rna21863	sense	intergenic	14899	same_strand	upstream	no
1	XLOC_263099	TCONS_00263936	LOC106042417	rna29819	antisense	genic	0	nested	intronic	no
0	XLOC_263099	TCONS_00263936	LOC106042417	rna29820	antisense	intergenic	1345	convergent	downstream	no
1	XLOC_047422	TCONS_00047569	LOC106030226	rna5449	sense	intergenic	51757	same_strand	downstream	no
1	XLOC_151588	TCONS_00152072	LOC106036066	rna17055	sense	intergenic	70054	same_strand	downstream	no
1	XLOC_224861	TCONS_00225564	LOC106040191	rna25614	antisense	intergenic	9950	divergent	upstream	no
1	XLOC_289318	TCONS_00290240	ACVR1	rna32654	sense	intergenic	3248	same_strand	downstream	no
0	XLOC_289318	TCONS_00290240	ACVR1	rna32653	sense	intergenic	7160	same_strand	downstream	no
0	XLOC_289318	TCONS_00290240	ACVR1	rna32650	sense	intergenic	7160	same_strand	downstream	no
0	XLOC_289318	TCONS_00290240	ACVR1	rna32652	sense	intergenic	7160	same_strand	downstream	no
0	XLOC_289318	TCONS_00290240	ACVR1	rna32651	sense	intergenic	7160	same_strand	downstream	no
1	XLOC_031146	TCONS_00031240	LOC106047516	rna3923	sense	intergenic	22617	same_strand	upstream	no
0	XLOC_031146	TCONS_00031240	LOC106047490	rna3918	sense	intergenic	25043	same_strand	downstream	yes
0	XLOC_031146	TCONS_00031240	LOC106047490	rna3917	sense	intergenic	25043	same_strand	downstream	yes
0	XLOC_031146	TCONS_00031240	LOC106047490	rna3922	sense	intergenic	25043	same_strand	downstream	yes
0	XLOC_031146	TCONS_00031240	LOC106047490	rna3912	sense	intergenic	25043	same_strand	downstream	yes
0	XLOC_031146	TCONS_00031240	LOC106047490	rna3921	sense	intergenic	25043	same_strand	downstream	yes
0	XLOC_031146	TCONS_00031240	LOC106047490	rna3914	sense	intergenic	25043	same_strand	downstream	yes
0	XLOC_031146	TCONS_00031240	LOC106047490	rna3920	sense	intergenic	25043	same_strand	downstream	yes
0	XLOC_031146	TCONS_00031240	LOC106047490	rna3915	sense	intergenic	25043	same_strand	downstream	yes
0	XLOC_031146	TCONS_00031240	LOC106047490	rna3916	sense	intergenic	25043	same_strand	downstream	yes
0	XLOC_031146	TCONS_00031240	LOC106047516	rna3924	sense	intergenic	22617	same_strand	upstream	no
0	XLOC_031146	TCONS_00031240	LOC106047490	rna3919	sense	intergenic	25043	same_strand	downstream	yes
0	XLOC_031146	TCONS_00031240	LOC106047490	rna3913	sense	intergenic	23601	same_strand	downstream	yes
1	XLOC_015303	TCONS_00015354	CPSF2	rna1774	sense	intergenic	8550	same_strand	downstream	no
1	XLOC_013796	TCONS_00013840	LOC106033837	rna1548	antisense	intergenic	69111	divergent	upstream	no
1	XLOC_237702	TCONS_00238462	LOC106041021	rna27168	sense	intergenic	6532	same_strand	downstream	no
0	XLOC_237702	TCONS_00238462	LOC106041021	rna27170	sense	intergenic	6532	same_strand	downstream	no
0	XLOC_237702	TCONS_00238462	LOC106041021	rna27169	sense	intergenic	6532	same_strand	downstream	no
1	XLOC_120133	TCONS_00120510	NDUFA10	rna13783	antisense	intergenic	42226	convergent	downstream	no
1	XLOC_174240	TCONS_00174800	AHNAK2	rna19509	antisense	intergenic	15542	divergent	upstream	no
1	XLOC_103356	TCONS_00103697	MICALL2	rna11895	sense	intergenic	8184	same_strand	downstream	no
1	XLOC_135109	TCONS_00135529	VPS13B	rna15550	antisense	intergenic	10514	divergent	upstream	no
1	XLOC_318289	TCONS_00319303	SPAG17	rna36030	antisense	intergenic	53779	divergent	upstream	no
0	XLOC_318289	TCONS_00319303	SPAG17	rna36034	antisense	intergenic	53780	divergent	upstream	no
0	XLOC_318289	TCONS_00319303	SPAG17	rna36035	antisense	intergenic	53780	divergent	upstream	no
0	XLOC_318289	TCONS_00319303	SPAG17	rna36036	antisense	intergenic	59877	divergent	upstream	no
0	XLOC_318289	TCONS_00319303	SPAG17	rna36031	antisense	intergenic	53780	divergent	upstream	no
0	XLOC_318289	TCONS_00319303	SPAG17	rna36032	antisense	intergenic	53780	divergent	upstream	no
0	XLOC_318289	TCONS_00319303	SPAG17	rna36033	antisense	intergenic	53780	divergent	upstream	no
1	XLOC_071251	TCONS_00071458	LOC106031367	rna7818	sense	intergenic	5782	same_strand	upstream	no
0	XLOC_071251	TCONS_00071458	SUDS3	rna7820	sense	intergenic	5877	same_strand	downstream	no
1	XLOC_070837	TCONS_00071043	FBRSL1	rna7498	antisense	genic	0	nested	intronic	no
0	XLOC_070837	TCONS_00071043	FBRSL1	rna7484	antisense	genic	0	nested	intronic	no
0	XLOC_070837	TCONS_00071043	FBRSL1	rna7502	antisense	genic	0	nested	intronic	no
0	XLOC_070837	TCONS_00071043	FBRSL1	rna7483	antisense	genic	0	nested	intronic	no
0	XLOC_070837	TCONS_00071043	FBRSL1	rna7478	antisense	genic	0	nested	intronic	no
0	XLOC_070837	TCONS_00071043	FBRSL1	rna7500	antisense	genic	0	nested	intronic	no
0	XLOC_070837	TCONS_00071043	FBRSL1	rna7480	antisense	genic	0	nested	intronic	no
0	XLOC_070837	TCONS_00071043	FBRSL1	rna7479	antisense	genic	0	nested	intronic	no
0	XLOC_070837	TCONS_00071043	FBRSL1	rna7492	antisense	genic	0	nested	intronic	no
0	XLOC_070837	TCONS_00071043	FBRSL1	rna7489	antisense	genic	0	nested	intronic	no
0	XLOC_070837	TCONS_00071043	FBRSL1	rna7496	antisense	genic	0	nested	intronic	no
0	XLOC_070837	TCONS_00071043	FBRSL1	rna7485	antisense	genic	0	nested	intronic	no
0	XLOC_070837	TCONS_00071043	FBRSL1	rna7491	antisense	genic	0	nested	intronic	no
0	XLOC_070837	TCONS_00071043	FBRSL1	rna7490	antisense	genic	0	nested	intronic	no
0	XLOC_070837	TCONS_00071043	FBRSL1	rna7493	antisense	genic	0	nested	intronic	no
0	XLOC_070837	TCONS_00071043	FBRSL1	rna7488	antisense	genic	0	nested	intronic	no
0	XLOC_070837	TCONS_00071043	FBRSL1	rna7487	antisense	genic	0	nested	intronic	no
0	XLOC_070837	TCONS_00071043	FBRSL1	rna7481	antisense	genic	0	nested	intronic	no
0	XLOC_070837	TCONS_00071043	FBRSL1	rna7482	antisense	genic	0	nested	intronic	no
0	XLOC_070837	TCONS_00071043	FBRSL1	rna7494	antisense	genic	0	nested	intronic	no
0	XLOC_070837	TCONS_00071043	FBRSL1	rna7499	antisense	genic	0	nested	intronic	no
0	XLOC_070837	TCONS_00071043	FBRSL1	rna7475	antisense	genic	0	nested	intronic	no
0	XLOC_070837	TCONS_00071043	FBRSL1	rna7497	antisense	genic	0	nested	intronic	no
0	XLOC_070837	TCONS_00071043	FBRSL1	rna7486	antisense	genic	0	nested	intronic	no
0	XLOC_070837	TCONS_00071043	FBRSL1	rna7501	antisense	genic	0	nested	intronic	no
0	XLOC_070837	TCONS_00071043	FBRSL1	rna7495	antisense	genic	0	nested	intronic	no
1	XLOC_165852	TCONS_00166387	ACVR2B	rna18767	antisense	intergenic	61630	divergent	upstream	no
0	XLOC_165852	TCONS_00166387	LOC106036821	rna18768	sense	intergenic	67064	same_strand	upstream	no
1	XLOC_283480	TCONS_00284385	CTDSPL2	rna32111	antisense	intergenic	5173	divergent	upstream	yes
0	XLOC_283480	TCONS_00284385	CASC4	rna32110	antisense	intergenic	7139	convergent	downstream	no
1	XLOC_215287	TCONS_00215981	LOC106039609	rna24240	antisense	genic	0	nested	intronic	no
1	XLOC_341745	TCONS_00342845	OSTN	rna39397	sense	genic	0	nested	intronic	no
0	XLOC_341745	TCONS_00342845	OSTN	rna39396	sense	genic	0	nested	intronic	no
1	XLOC_119005	TCONS_00119381	HDAC4	rna13788	sense	genic	0	nested	intronic	no
1	XLOC_155898	TCONS_00156403	OSMR	rna17584	antisense	intergenic	95	divergent	upstream	yes
0	XLOC_155898	TCONS_00156403	OSMR	rna17583	antisense	intergenic	95	divergent	upstream	yes
1	XLOC_203470	TCONS_00204119	INSIG1	rna22768	antisense	intergenic	26198	divergent	upstream	no
1	XLOC_069817	TCONS_00070021	SGSM1	rna7117	sense	intergenic	456	same_strand	downstream	no
0	XLOC_069817	TCONS_00070021	SGSM1	rna7116	sense	intergenic	456	same_strand	downstream	no
0	XLOC_069817	TCONS_00070021	SGSM1	rna7115	sense	intergenic	456	same_strand	downstream	no
0	XLOC_069817	TCONS_00070021	SGSM1	rna7114	sense	intergenic	456	same_strand	downstream	no
0	XLOC_069817	TCONS_00070021	SGSM1	rna7113	sense	intergenic	456	same_strand	downstream	no
1	XLOC_316319	TCONS_00317323	CD9	rna35567	sense	intergenic	295	same_strand	downstream	yes
1	XLOC_262085	TCONS_00262916	WDR36	rna29652	sense	intergenic	2663	same_strand	upstream	no
0	XLOC_262085	TCONS_00262916	WDR36	rna29653	sense	intergenic	2822	same_strand	upstream	no
1	XLOC_234845	TCONS_00235592	GALNT18	rna26865	sense	genic	0	nested	intronic	no
0	XLOC_234845	TCONS_00235592	GALNT18	rna26868	sense	genic	0	nested	intronic	no
0	XLOC_234845	TCONS_00235592	GALNT18	rna26867	sense	genic	0	nested	intronic	no
0	XLOC_234845	TCONS_00235592	GALNT18	rna26866	sense	genic	0	nested	intronic	no
0	XLOC_234845	TCONS_00235592	GALNT18	rna26870	sense	genic	0	nested	intronic	no
1	XLOC_087237	TCONS_00087512	LOC106032403	rna9703	sense	intergenic	12163	same_strand	downstream	no
1	XLOC_152311	TCONS_00152803	HLCS	rna17265	sense	genic	0	nested	intronic	no
0	XLOC_152311	TCONS_00152803	HLCS	rna17266	sense	genic	0	nested	intronic	no
0	XLOC_152311	TCONS_00152803	HLCS	rna17264	sense	genic	0	nested	intronic	no
1	XLOC_317566	TCONS_00318574	SOS1	rna35801	sense	genic	0	nested	intronic	no
0	XLOC_317566	TCONS_00318574	SOS1	rna35800	sense	genic	0	nested	intronic	no
0	XLOC_317566	TCONS_00318574	SOS1	rna35799	sense	genic	0	nested	intronic	no
0	XLOC_317566	TCONS_00318574	SOS1	rna35798	sense	genic	0	nested	intronic	no
1	XLOC_312939	TCONS_00313942	MANBA	rna35251	sense	intergenic	171	same_strand	upstream	no
0	XLOC_312939	TCONS_00313942	MANBA	rna35250	sense	intergenic	171	same_strand	upstream	no
0	XLOC_312939	TCONS_00313942	MANBA	rna35249	sense	intergenic	171	same_strand	upstream	no
0	XLOC_312939	TCONS_00313942	UBE2D3	rna35253	sense	intergenic	2520	same_strand	downstream	no
0	XLOC_312939	TCONS_00313942	UBE2D3	rna35252	sense	intergenic	2520	same_strand	downstream	no
1	XLOC_321196	TCONS_00322223	LOC106046005	rna36525	antisense	intergenic	1417	divergent	upstream	no
1	XLOC_238927	TCONS_00239695	GATSL2	rna27305	sense	genic	0	nested	intronic	no
1	XLOC_341673	TCONS_00342773	LOC106047602	rna39389	antisense	intergenic	12745	convergent	downstream	no
0	XLOC_341673	TCONS_00342773	LOC106047601	rna39388	antisense	intergenic	18233	convergent	downstream	no
0	XLOC_341673	TCONS_00342773	LOC106047602	rna39387	antisense	intergenic	12745	convergent	downstream	no
1	XLOC_072603	TCONS_00072820	ESRRG	rna8099	sense	genic	0	nested	intronic	no
0	XLOC_072603	TCONS_00072820	ESRRG	rna8098	sense	genic	0	nested	intronic	no
1	XLOC_172702	TCONS_00173257	ARRDC1	rna19179	sense	genic	0	nested	intronic	no
1	XLOC_111050	TCONS_00111412	LOC106034122	rna13072	antisense	intergenic	14984	convergent	downstream	no
0	XLOC_111050	TCONS_00111412	LOC106034122	rna13073	antisense	intergenic	17561	convergent	downstream	no
1	XLOC_270101	TCONS_00270968	STAB1	rna30547	sense	intergenic	588	same_strand	upstream	no
0	XLOC_270101	TCONS_00270968	NISCH	rna30546	sense	intergenic	1568	same_strand	downstream	no
1	XLOC_281735	TCONS_00282634	MAFB	rna31864	antisense	intergenic	4644	divergent	upstream	no
1	XLOC_201357	TCONS_00201991	LOC106038808	rna22602	antisense	intergenic	5063	convergent	downstream	no
0	XLOC_201357	TCONS_00201991	MIPOL1	rna22599	sense	intergenic	9483	same_strand	downstream	no
0	XLOC_201357	TCONS_00201991	MIPOL1	rna22600	sense	intergenic	9483	same_strand	downstream	no
0	XLOC_201357	TCONS_00201991	MIPOL1	rna22591	sense	intergenic	9483	same_strand	downstream	no
0	XLOC_201357	TCONS_00201991	MIPOL1	rna22593	sense	intergenic	9483	same_strand	downstream	no
0	XLOC_201357	TCONS_00201991	MIPOL1	rna22592	sense	intergenic	9483	same_strand	downstream	no
0	XLOC_201357	TCONS_00201991	MIPOL1	rna22601	sense	intergenic	9483	same_strand	downstream	no
0	XLOC_201357	TCONS_00201991	MIPOL1	rna22594	sense	intergenic	9483	same_strand	downstream	no
1	XLOC_164121	TCONS_00164651	DDRGK1	rna18600	antisense	intergenic	5939	convergent	downstream	yes
0	XLOC_164121	TCONS_00164651	DDRGK1	rna18602	antisense	intergenic	7257	convergent	downstream	yes
0	XLOC_164121	TCONS_00164651	DDRGK1	rna18601	antisense	intergenic	5939	convergent	downstream	yes
0	XLOC_164121	TCONS_00164651	DDRGK1	rna18598	antisense	intergenic	5939	convergent	downstream	yes
0	XLOC_164121	TCONS_00164651	DDRGK1	rna18599	antisense	intergenic	5939	convergent	downstream	yes
1	XLOC_061836	TCONS_00062021	LOC106030696	rna6384	antisense	intergenic	621	convergent	downstream	no
1	XLOC_357961	TCONS_00359133	KAT7	rna42648	antisense	intergenic	4466	convergent	downstream	no
1	XLOC_121973	TCONS_00122355	UNK	rna14552	sense	genic	0	nested	intronic	no
0	XLOC_121973	TCONS_00122355	UNK	rna14553	sense	genic	0	nested	intronic	no
0	XLOC_121973	TCONS_00122355	UNK	rna14556	sense	genic	0	nested	intronic	no
0	XLOC_121973	TCONS_00122355	UNK	rna14557	sense	genic	0	nested	intronic	no
0	XLOC_121973	TCONS_00122355	UNK	rna14554	sense	genic	0	nested	intronic	no
0	XLOC_121973	TCONS_00122355	UNK	rna14555	sense	genic	0	nested	intronic	no
1	XLOC_346983	TCONS_00348103	LOC106048168	rna40335	sense	intergenic	58381	same_strand	downstream	no
1	XLOC_328041	TCONS_00329082	TUBGCP3	rna37244	sense	genic	0	nested	intronic	no
1	XLOC_037552	TCONS_00037671	LOC106048540	rna4054	sense	intergenic	2035	same_strand	downstream	no
0	XLOC_037552	TCONS_00037671	LOC106048541	rna4053	sense	intergenic	5290	same_strand	upstream	no
1	XLOC_308320	TCONS_00309308	LOC106045149	rna34917	sense	intergenic	1167	same_strand	downstream	no
0	XLOC_308320	TCONS_00309308	LOC106045149	rna34909	sense	intergenic	1167	same_strand	downstream	no
0	XLOC_308320	TCONS_00309308	LOC106045149	rna34914	sense	intergenic	1167	same_strand	downstream	no
0	XLOC_308320	TCONS_00309308	LOC106045149	rna34916	sense	intergenic	1167	same_strand	downstream	no
0	XLOC_308320	TCONS_00309308	LOC106045149	rna34919	sense	intergenic	1167	same_strand	downstream	no
0	XLOC_308320	TCONS_00309308	LOC106045149	rna34918	sense	intergenic	1167	same_strand	downstream	no
0	XLOC_308320	TCONS_00309308	EPB41	rna34921	sense	intergenic	2788	same_strand	upstream	no
0	XLOC_308320	TCONS_00309308	LOC106045149	rna34920	sense	intergenic	1167	same_strand	downstream	no
0	XLOC_308320	TCONS_00309308	LOC106045149	rna34911	sense	intergenic	1167	same_strand	downstream	no
0	XLOC_308320	TCONS_00309308	EPB41	rna34922	sense	intergenic	3307	same_strand	upstream	no
0	XLOC_308320	TCONS_00309308	LOC106045149	rna34913	sense	intergenic	1167	same_strand	downstream	no
0	XLOC_308320	TCONS_00309308	LOC106045149	rna34910	sense	intergenic	1167	same_strand	downstream	no
0	XLOC_308320	TCONS_00309308	LOC106045149	rna34915	sense	intergenic	1167	same_strand	downstream	no
0	XLOC_308320	TCONS_00309308	LOC106045149	rna34912	sense	intergenic	1167	same_strand	downstream	no
1	XLOC_064382	TCONS_00064577	CCDC91	rna6723	sense	intergenic	38775	same_strand	downstream	no
1	XLOC_276757	TCONS_00277643	SUPT20H	rna31395	antisense	intergenic	11800	divergent	upstream	no
1	XLOC_221895	TCONS_00222593	LOC106039977	rna25085	antisense	intergenic	1682	convergent	downstream	no
0	XLOC_221895	TCONS_00222593	LOC106039977	rna25087	antisense	intergenic	2909	convergent	downstream	no
0	XLOC_221895	TCONS_00222593	LOC106039977	rna25086	antisense	intergenic	2909	convergent	downstream	no
0	XLOC_221895	TCONS_00222593	LOC106039978	rna25088	sense	intergenic	7610	same_strand	upstream	no
1	XLOC_284784	TCONS_00285694	COL22A1	rna32304	antisense	genic	0	nested	intronic	no
1	XLOC_126811	TCONS_00127202	LDLRAD4	rna14936	sense	intergenic	17929	same_strand	upstream	yes
0	XLOC_126811	TCONS_00127202	LDLRAD4	rna14937	sense	intergenic	17929	same_strand	upstream	yes
1	XLOC_038598	TCONS_00038722	DPY30	rna4304	sense	intergenic	1488	same_strand	upstream	no
0	XLOC_038598	TCONS_00038722	SPAST	rna4306	antisense	intergenic	5006	divergent	upstream	no
0	XLOC_038598	TCONS_00038722	LOC106049827	rna4302	antisense	intergenic	6755	convergent	downstream	no
0	XLOC_038598	TCONS_00038722	LOC106049827	rna4300	antisense	intergenic	6755	convergent	downstream	no
0	XLOC_038598	TCONS_00038722	LOC106049827	rna4301	antisense	intergenic	6755	convergent	downstream	no
0	XLOC_038598	TCONS_00038722	SPAST	rna4307	antisense	intergenic	5007	divergent	upstream	no
0	XLOC_038598	TCONS_00038722	DPY30	rna4305	sense	intergenic	1735	same_strand	upstream	no
0	XLOC_038598	TCONS_00038722	DPY30	rna4303	sense	intergenic	1488	same_strand	upstream	no
1	XLOC_122957	TCONS_00123344	MCHR1	rna14517	antisense	intergenic	1052	divergent	upstream	no
1	XLOC_126676	TCONS_00127067	PIEZO2	rna14891	antisense	genic	0	nested	intronic	yes
1	XLOC_276940	TCONS_00277826	LOC106043229	rna31413	sense	intergenic	23676	same_strand	upstream	no
1	XLOC_232051	TCONS_00232776	LOC106040545	rna26363	antisense	intergenic	8855	convergent	downstream	no
1	XLOC_332502	TCONS_00333561	PTH1R	rna37982	antisense	intergenic	19934	divergent	upstream	no
1	XLOC_044952	TCONS_00045094	LOC106030202	rna5447	antisense	intergenic	32586	divergent	upstream	no
1	XLOC_203470	TCONS_00204118	INSIG1	rna22768	antisense	intergenic	26186	divergent	upstream	no
1	XLOC_357141	TCONS_00358313	LOC106049549	rna42387	sense	intergenic	3793	same_strand	downstream	yes
1	XLOC_151055	TCONS_00151537	SEC61B	rna16965	sense	intergenic	2255	same_strand	downstream	no
0	XLOC_151055	TCONS_00151537	ALG2	rna16966	antisense	intergenic	7732	divergent	upstream	no
1	XLOC_157278	TCONS_00157791	LOC106036432	rna17776	sense	intergenic	1472	same_strand	upstream	no
0	XLOC_157278	TCONS_00157791	MRPL46	rna17775	sense	intergenic	9298	same_strand	downstream	no
1	XLOC_131232	TCONS_00131640	GTF2E2	rna15244	antisense	intergenic	5061	convergent	downstream	no
0	XLOC_131232	TCONS_00131640	DCTN6	rna15243	sense	intergenic	5117	same_strand	downstream	no
0	XLOC_131232	TCONS_00131640	GTF2E2	rna15246	antisense	intergenic	6218	convergent	downstream	no
0	XLOC_131232	TCONS_00131640	GTF2E2	rna15245	antisense	intergenic	6216	convergent	downstream	no
1	XLOC_354564	TCONS_00355726	COG6	rna41689	sense	intergenic	10771	same_strand	downstream	no
1	XLOC_194961	TCONS_00195583	LOC106038505	rna21866	antisense	genic	0	nested	intronic	no
0	XLOC_194961	TCONS_00195583	FAM49B	rna21864	antisense	intergenic	9400	convergent	downstream	no
0	XLOC_194961	TCONS_00195583	FAM49B	rna21862	antisense	intergenic	9400	convergent	downstream	no
0	XLOC_194961	TCONS_00195583	FAM49B	rna21863	antisense	intergenic	9400	convergent	downstream	no
0	XLOC_194961	TCONS_00195583	LOC106038505	rna21867	antisense	genic	0	nested	intronic	no
0	XLOC_194961	TCONS_00195583	FAM49B	rna21865	antisense	intergenic	9400	convergent	downstream	no
1	XLOC_235898	TCONS_00236652	PCDH18	rna27059	sense	intergenic	2018	same_strand	upstream	yes
0	XLOC_235898	TCONS_00236652	PCDH18	rna27058	sense	intergenic	2018	same_strand	upstream	yes
1	XLOC_303732	TCONS_00304704	BCL6	rna34381	antisense	intergenic	47846	divergent	upstream	no
1	XLOC_237673	TCONS_00238428	LOC106041016	rna27163	sense	intergenic	1454	same_strand	downstream	no
0	XLOC_237673	TCONS_00238428	LOC106041016	rna27165	sense	intergenic	1454	same_strand	downstream	no
0	XLOC_237673	TCONS_00238428	LOC106041016	rna27167	sense	intergenic	1454	same_strand	downstream	no
0	XLOC_237673	TCONS_00238428	LOC106041016	rna27164	sense	intergenic	1454	same_strand	downstream	no
0	XLOC_237673	TCONS_00238428	LOC106041016	rna27166	sense	intergenic	1454	same_strand	downstream	no
1	XLOC_017507	TCONS_00017570	PVRL3	rna2278	sense	genic	0	nested	intronic	no
1	XLOC_204884	TCONS_00205548	LOC106039008	rna22947	sense	intergenic	45491	same_strand	downstream	no
0	XLOC_204884	TCONS_00205548	LOC106039008	rna22954	sense	intergenic	47746	same_strand	downstream	no
0	XLOC_204884	TCONS_00205548	LOC106039008	rna22950	sense	intergenic	45491	same_strand	downstream	no
0	XLOC_204884	TCONS_00205548	LOC106039008	rna22946	sense	intergenic	45491	same_strand	downstream	no
0	XLOC_204884	TCONS_00205548	LOC106039008	rna22952	sense	intergenic	45491	same_strand	downstream	no
0	XLOC_204884	TCONS_00205548	LOC106039008	rna22948	sense	intergenic	45491	same_strand	downstream	no
0	XLOC_204884	TCONS_00205548	LOC106039008	rna22949	sense	intergenic	45491	same_strand	downstream	no
0	XLOC_204884	TCONS_00205548	LOC106039008	rna22951	sense	intergenic	45491	same_strand	downstream	no
0	XLOC_204884	TCONS_00205548	LOC106039008	rna22953	sense	intergenic	45491	same_strand	downstream	no
1	XLOC_053146	TCONS_00053310	TINAG	rna5948	sense	intergenic	5958	same_strand	upstream	yes
1	XLOC_307738	TCONS_00308725	GADD45G	rna34863	sense	intergenic	1664	same_strand	downstream	no
0	XLOC_307738	TCONS_00308725	LOC106045081	rna34861	sense	intergenic	3669	same_strand	downstream	no
0	XLOC_307738	TCONS_00308725	LOC106045081	rna34862	sense	intergenic	3669	same_strand	downstream	no
1	XLOC_332523	TCONS_00333589	CDC25A	rna37937	antisense	intergenic	10327	convergent	downstream	yes
1	XLOC_308587	TCONS_00309575	HIVEP3	rna34984	sense	genic	0	nested	intronic	no
1	XLOC_181903	TCONS_00182495	ROCK1	rna20070	sense	genic	0	nested	intronic	no
0	XLOC_181903	TCONS_00182495	ROCK1	rna20069	sense	genic	0	nested	intronic	no
1	XLOC_209474	TCONS_00210148	CEP63	rna23301	sense	intergenic	892	same_strand	downstream	no
0	XLOC_209474	TCONS_00210148	KY	rna23307	antisense	intergenic	1601	convergent	downstream	no
0	XLOC_209474	TCONS_00210148	CEP63	rna23304	sense	intergenic	892	same_strand	downstream	no
0	XLOC_209474	TCONS_00210148	CEP63	rna23306	sense	intergenic	892	same_strand	downstream	no
0	XLOC_209474	TCONS_00210148	CEP63	rna23305	sense	intergenic	893	same_strand	downstream	no
0	XLOC_209474	TCONS_00210148	CEP63	rna23303	sense	intergenic	892	same_strand	downstream	no
1	XLOC_132037	TCONS_00132446	SORBS2	rna15387	sense	genic	0	nested	intronic	no
0	XLOC_132037	TCONS_00132446	SORBS2	rna15374	sense	genic	0	nested	intronic	no
0	XLOC_132037	TCONS_00132446	SORBS2	rna15391	sense	intergenic	9804	same_strand	upstream	no
0	XLOC_132037	TCONS_00132446	SORBS2	rna15389	sense	genic	0	nested	intronic	no
0	XLOC_132037	TCONS_00132446	SORBS2	rna15375	sense	genic	0	nested	intronic	no
0	XLOC_132037	TCONS_00132446	SORBS2	rna15380	sense	genic	0	nested	intronic	no
0	XLOC_132037	TCONS_00132446	SORBS2	rna15383	sense	genic	0	nested	intronic	no
0	XLOC_132037	TCONS_00132446	SORBS2	rna15385	sense	genic	0	nested	intronic	no
0	XLOC_132037	TCONS_00132446	SORBS2	rna15378	sense	genic	0	nested	intronic	no
0	XLOC_132037	TCONS_00132446	SORBS2	rna15373	sense	genic	0	nested	intronic	no
0	XLOC_132037	TCONS_00132446	SORBS2	rna15388	sense	genic	0	nested	intronic	no
0	XLOC_132037	TCONS_00132446	SORBS2	rna15390	sense	intergenic	9625	same_strand	upstream	no
0	XLOC_132037	TCONS_00132446	SORBS2	rna15382	sense	genic	0	nested	intronic	no
0	XLOC_132037	TCONS_00132446	SORBS2	rna15381	sense	genic	0	nested	intronic	no
0	XLOC_132037	TCONS_00132446	SORBS2	rna15377	sense	genic	0	nested	intronic	no
0	XLOC_132037	TCONS_00132446	SORBS2	rna15376	sense	genic	0	nested	intronic	no
0	XLOC_132037	TCONS_00132446	SORBS2	rna15386	sense	genic	0	nested	intronic	no
0	XLOC_132037	TCONS_00132446	SORBS2	rna15379	sense	genic	0	nested	intronic	no
0	XLOC_132037	TCONS_00132446	SORBS2	rna15384	sense	genic	0	nested	intronic	no
1	XLOC_033105	TCONS_00033203	MDM1	rna3791	antisense	intergenic	32106	divergent	upstream	no
0	XLOC_033105	TCONS_00033203	MDM1	rna3788	antisense	intergenic	32106	divergent	upstream	no
0	XLOC_033105	TCONS_00033203	MDM1	rna3790	antisense	intergenic	32106	divergent	upstream	no
0	XLOC_033105	TCONS_00033203	MDM1	rna3789	antisense	intergenic	32106	divergent	upstream	no
0	XLOC_033105	TCONS_00033203	MDM1	rna3787	antisense	intergenic	32106	divergent	upstream	no
1	XLOC_316988	TCONS_00317994	AR	rna35698	antisense	intergenic	25862	divergent	upstream	no
1	XLOC_233130	TCONS_00233862	MVB12B	rna26623	sense	intergenic	18254	same_strand	upstream	no
0	XLOC_233130	TCONS_00233862	MVB12B	rna26624	sense	intergenic	18254	same_strand	upstream	no
1	XLOC_084395	TCONS_00084653	KIAA0922	rna9460	sense	genic	0	nested	intronic	no
0	XLOC_084395	TCONS_00084653	KIAA0922	rna9462	sense	genic	0	nested	intronic	no
0	XLOC_084395	TCONS_00084653	KIAA0922	rna9461	sense	genic	0	nested	intronic	no
1	XLOC_179670	TCONS_00180248	SLC25A13	rna20047	sense	intergenic	170	same_strand	upstream	no
1	XLOC_260064	TCONS_00260892	FOXA2	rna29494	sense	intergenic	2006	same_strand	downstream	no
1	XLOC_103030	TCONS_00103365	COQ7	rna11643	sense	intergenic	8450	same_strand	downstream	no
0	XLOC_103030	TCONS_00103365	SYT17	rna11640	sense	intergenic	9635	same_strand	upstream	no
0	XLOC_103030	TCONS_00103365	COQ7	rna11642	sense	intergenic	8450	same_strand	downstream	no
1	XLOC_175642	TCONS_00176210	LOC106037305	rna19659	antisense	intergenic	90	divergent	upstream	no
1	XLOC_167404	TCONS_00167949	BTG1	rna18856	antisense	intergenic	92836	divergent	upstream	no
1	XLOC_095271	TCONS_00095568	PPP2R2B	rna10190	antisense	genic	0	nested	intronic	no
0	XLOC_095271	TCONS_00095568	PPP2R2B	rna10191	antisense	genic	0	nested	intronic	no
1	XLOC_062297	TCONS_00062482	ID2	rna6404	antisense	intergenic	11251	divergent	upstream	no
0	XLOC_062297	TCONS_00062482	LOC106030704	rna6405	sense	intergenic	17169	same_strand	downstream	no
1	XLOC_010854	TCONS_00010882	ITPK1	rna1760	sense	intergenic	4700	same_strand	upstream	no
1	XLOC_157623	TCONS_00158138	LOC106036504	rna17851	sense	intergenic	10693	same_strand	upstream	no
1	XLOC_352257	TCONS_00353400	BSN	rna41274	sense	intergenic	3094	same_strand	upstream	no
0	XLOC_352257	TCONS_00353400	TRAIP	rna41275	sense	intergenic	6321	same_strand	downstream	no
1	XLOC_231066	TCONS_00231790	APPL1	rna26227	sense	intergenic	82	same_strand	upstream	no
1	XLOC_291066	TCONS_00291992	LOC106043964	rna32781	antisense	genic	0	nested	intronic	no
0	XLOC_291066	TCONS_00291992	PPEF2	rna32780	sense	intergenic	4233	same_strand	upstream	no
0	XLOC_291066	TCONS_00291992	PPEF2	rna32779	sense	intergenic	2947	same_strand	upstream	no
0	XLOC_291066	TCONS_00291992	NAAA	rna32782	sense	intergenic	960	same_strand	downstream	no
1	XLOC_346002	TCONS_00347119	NECAP1	rna40152	antisense	intergenic	568	divergent	upstream	no
0	XLOC_346002	TCONS_00347119	C3AR1	rna40153	sense	intergenic	8166	same_strand	upstream	no
1	XLOC_243291	TCONS_00244073	SRGAP2	rna27783	sense	genic	0	nested	intronic	no
0	XLOC_243291	TCONS_00244073	SRGAP2	rna27784	sense	genic	0	nested	intronic	no
1	XLOC_014291	TCONS_00014340	RBPJ	rna1630	antisense	genic	0	nested	intronic	yes
0	XLOC_014291	TCONS_00014340	RBPJ	rna1631	antisense	intergenic	8817	divergent	upstream	yes
1	XLOC_239083	TCONS_00239852	WBSCR27	rna27253	sense	intergenic	10440	same_strand	upstream	yes
0	XLOC_239083	TCONS_00239852	LOC106041045	rna27252	antisense	intergenic	12986	convergent	downstream	no
0	XLOC_239083	TCONS_00239852	LOC106041034	rna27251	antisense	intergenic	16613	convergent	downstream	no
1	XLOC_276327	TCONS_00277209	ALMS1	rna31283	sense	genic	0	nested	intronic	no
0	XLOC_276327	TCONS_00277209	TRNAG-GCC	rna31284	sense	intergenic	4995	same_strand	downstream	no
1	XLOC_264533	TCONS_00265375	LOC106042564	rna30054	sense	intergenic	17227	same_strand	downstream	no
1	XLOC_343093	TCONS_00344199	ANKRD33	rna39595	sense	intergenic	7422	same_strand	upstream	no
1	XLOC_301001	TCONS_00301964	LOC106044630	rna34016	antisense	genic	0	nested	intronic	no
0	XLOC_301001	TCONS_00301964	MIB2	rna34018	sense	intergenic	3400	same_strand	upstream	no
0	XLOC_301001	TCONS_00301964	MIB2	rna34021	sense	intergenic	3400	same_strand	upstream	no
0	XLOC_301001	TCONS_00301964	LOC106044648	rna34009	antisense	intergenic	2188	divergent	upstream	no
0	XLOC_301001	TCONS_00301964	LOC106044630	rna34014	antisense	genic	0	nested	intronic	no
0	XLOC_301001	TCONS_00301964	LOC106044648	rna34010	antisense	intergenic	2188	divergent	upstream	no
0	XLOC_301001	TCONS_00301964	MIB2	rna34017	sense	intergenic	3399	same_strand	upstream	no
0	XLOC_301001	TCONS_00301964	LOC106044648	rna34011	antisense	intergenic	3275	divergent	upstream	no
0	XLOC_301001	TCONS_00301964	MIB2	rna34019	sense	intergenic	3400	same_strand	upstream	no
0	XLOC_301001	TCONS_00301964	LOC106044630	rna34015	antisense	genic	0	nested	intronic	no
0	XLOC_301001	TCONS_00301964	MIB2	rna34020	sense	intergenic	3400	same_strand	upstream	no
1	XLOC_108297	TCONS_00108652	PTPRF	rna12781	antisense	intergenic	48370	divergent	upstream	no
0	XLOC_108297	TCONS_00108652	PTPRF	rna12771	antisense	intergenic	48370	divergent	upstream	no
0	XLOC_108297	TCONS_00108652	PTPRF	rna12778	antisense	intergenic	48370	divergent	upstream	no
0	XLOC_108297	TCONS_00108652	PTPRF	rna12772	antisense	intergenic	48370	divergent	upstream	no
0	XLOC_108297	TCONS_00108652	PTPRF	rna12784	antisense	intergenic	48370	divergent	upstream	no
0	XLOC_108297	TCONS_00108652	PTPRF	rna12776	antisense	intergenic	48370	divergent	upstream	no
0	XLOC_108297	TCONS_00108652	PTPRF	rna12783	antisense	intergenic	48370	divergent	upstream	no
0	XLOC_108297	TCONS_00108652	PTPRF	rna12773	antisense	intergenic	48370	divergent	upstream	no
0	XLOC_108297	TCONS_00108652	PTPRF	rna12782	antisense	intergenic	48370	divergent	upstream	no
0	XLOC_108297	TCONS_00108652	PTPRF	rna12777	antisense	intergenic	48370	divergent	upstream	no
0	XLOC_108297	TCONS_00108652	PTPRF	rna12780	antisense	intergenic	48370	divergent	upstream	no
0	XLOC_108297	TCONS_00108652	PTPRF	rna12779	antisense	intergenic	48370	divergent	upstream	no
0	XLOC_108297	TCONS_00108652	PTPRF	rna12774	antisense	intergenic	48370	divergent	upstream	no
0	XLOC_108297	TCONS_00108652	PTPRF	rna12775	antisense	intergenic	48370	divergent	upstream	no
1	XLOC_025632	TCONS_00025708	PAMR1	rna3358	sense	genic	0	nested	intronic	yes
0	XLOC_025632	TCONS_00025708	PAMR1	rna3357	sense	genic	0	nested	intronic	yes
0	XLOC_025632	TCONS_00025708	PAMR1	rna3356	sense	genic	0	nested	intronic	yes
1	XLOC_140922	TCONS_00141371	PTPN12	rna16127	sense	intergenic	11354	same_strand	downstream	no
0	XLOC_140922	TCONS_00141371	PTPN12	rna16128	sense	intergenic	11355	same_strand	downstream	no
0	XLOC_140922	TCONS_00141371	RSBN1L	rna16129	sense	intergenic	18938	same_strand	upstream	no
1	XLOC_209291	TCONS_00209965	KLF3	rna23156	antisense	intergenic	57611	divergent	upstream	yes
1	XLOC_344879	TCONS_00345992	CRTC1	rna39954	sense	genic	0	nested	intronic	no
0	XLOC_344879	TCONS_00345992	CRTC1	rna39955	sense	genic	0	nested	intronic	no
0	XLOC_344879	TCONS_00345992	CRTC1	rna39953	sense	genic	0	nested	intronic	no
1	XLOC_317843	TCONS_00318852	ANGPTL4	rna35897	sense	intergenic	14953	same_strand	upstream	no
1	XLOC_336877	TCONS_00337954	LOC106047373	rna38959	antisense	intergenic	2526	divergent	upstream	no
0	XLOC_336877	TCONS_00337954	LOC106047378	rna38966	sense	intergenic	6587	same_strand	upstream	no
0	XLOC_336877	TCONS_00337954	LOC106047378	rna38964	sense	intergenic	6587	same_strand	upstream	no
0	XLOC_336877	TCONS_00337954	LOC106047378	rna38965	sense	intergenic	6587	same_strand	upstream	no
0	XLOC_336877	TCONS_00337954	LOC106047378	rna38969	sense	intergenic	6587	same_strand	upstream	no
0	XLOC_336877	TCONS_00337954	LOC106047378	rna38970	sense	intergenic	6587	same_strand	upstream	no
0	XLOC_336877	TCONS_00337954	LOC106047378	rna38961	sense	intergenic	6587	same_strand	upstream	no
0	XLOC_336877	TCONS_00337954	LOC106047378	rna38968	sense	intergenic	6587	same_strand	upstream	no
0	XLOC_336877	TCONS_00337954	LOC106047378	rna38971	sense	intergenic	6587	same_strand	upstream	no
0	XLOC_336877	TCONS_00337954	LOC106047378	rna38962	sense	intergenic	6587	same_strand	upstream	no
0	XLOC_336877	TCONS_00337954	LOC106047378	rna38963	sense	intergenic	6587	same_strand	upstream	no
0	XLOC_336877	TCONS_00337954	LOC106047378	rna38960	sense	intergenic	6071	same_strand	upstream	no
0	XLOC_336877	TCONS_00337954	LOC106047378	rna38967	sense	intergenic	6587	same_strand	upstream	no
1	XLOC_288806	TCONS_00289723	DUSP22	rna32585	antisense	intergenic	14127	divergent	upstream	no
1	XLOC_248469	TCONS_00249266	LOC106041696	rna28493	sense	intergenic	2193	same_strand	upstream	no
1	XLOC_217962	TCONS_00218660	LOC106039764	rna24576	sense	intergenic	15	same_strand	downstream	no
0	XLOC_217962	TCONS_00218660	LAYN	rna24578	antisense	intergenic	9417	divergent	upstream	no
0	XLOC_217962	TCONS_00218660	LAYN	rna24577	antisense	intergenic	9417	divergent	upstream	no
0	XLOC_217962	TCONS_00218660	BTG4	rna24575	sense	intergenic	179	same_strand	upstream	no
0	XLOC_217962	TCONS_00218660	BTG4	rna24573	sense	intergenic	179	same_strand	upstream	no
0	XLOC_217962	TCONS_00218660	LOC106039765	rna24572	antisense	intergenic	3113	convergent	downstream	no
0	XLOC_217962	TCONS_00218660	BTG4	rna24574	sense	intergenic	179	same_strand	upstream	no
1	XLOC_121928	TCONS_00122310	LOC106034836	rna14513	antisense	intergenic	3	convergent	downstream	no
0	XLOC_121928	TCONS_00122310	GRB2	rna14508	antisense	intergenic	8536	divergent	upstream	yes
0	XLOC_121928	TCONS_00122310	LOC106034836	rna14512	antisense	intergenic	3	convergent	downstream	no
0	XLOC_121928	TCONS_00122310	LOC106034836	rna14511	antisense	intergenic	3	convergent	downstream	no
1	XLOC_298917	TCONS_00299873	LOC106044520	rna33841	sense	intergenic	2765	same_strand	downstream	no
0	XLOC_298917	TCONS_00299873	TSPAN12	rna33840	antisense	intergenic	5013	divergent	upstream	no
0	XLOC_298917	TCONS_00299873	TSPAN12	rna33839	antisense	intergenic	4990	divergent	upstream	no
1	XLOC_345661	TCONS_00346774	PCF11	rna40109	sense	intergenic	3513	same_strand	upstream	yes
1	XLOC_235898	TCONS_00236649	PCDH18	rna27059	sense	intergenic	2018	same_strand	upstream	yes
0	XLOC_235898	TCONS_00236649	PCDH18	rna27058	sense	intergenic	2018	same_strand	upstream	yes
1	XLOC_303726	TCONS_00304696	BCL6	rna34381	antisense	intergenic	13786	divergent	upstream	no
1	XLOC_282173	TCONS_00283072	ZHX3	rna31871	sense	genic	0	nested	intronic	no
0	XLOC_282173	TCONS_00283072	LPIN3	rna31877	antisense	intergenic	9125	divergent	upstream	no
0	XLOC_282173	TCONS_00283072	ZHX3	rna31867	sense	genic	0	nested	intronic	no
0	XLOC_282173	TCONS_00283072	ZHX3	rna31870	sense	genic	0	nested	intronic	no
0	XLOC_282173	TCONS_00283072	LPIN3	rna31876	antisense	intergenic	7294	divergent	upstream	no
0	XLOC_282173	TCONS_00283072	ZHX3	rna31868	sense	genic	0	nested	intronic	no
0	XLOC_282173	TCONS_00283072	ZHX3	rna31869	sense	genic	0	nested	intronic	no
1	XLOC_212974	TCONS_00213656	PDE10A	rna24087	sense	genic	0	nested	intronic	no
1	XLOC_097908	TCONS_00098214	TM2D1	rna10691	antisense	intergenic	15311	convergent	downstream	no
1	XLOC_090171	TCONS_00090453	ALDH8A1	rna9877	sense	intergenic	58353	same_strand	downstream	yes
1	XLOC_038956	TCONS_00039083	LOC106048462	rna4357	sense	intergenic	4737	same_strand	upstream	no
1	XLOC_345760	TCONS_00346873	ME3	rna40126	sense	genic	0	nested	intronic	no
0	XLOC_345760	TCONS_00346873	ME3	rna40127	sense	intergenic	2087	same_strand	upstream	no
0	XLOC_345760	TCONS_00346873	ME3	rna40128	sense	intergenic	2098	same_strand	upstream	no
1	XLOC_168477	TCONS_00169023	FGD6	rna18896	sense	genic	0	nested	intronic	no
1	XLOC_081067	TCONS_00081311	AFAP1L2	rna8774	sense	intergenic	13261	same_strand	upstream	no
0	XLOC_081067	TCONS_00081311	AFAP1L2	rna8773	sense	intergenic	13261	same_strand	upstream	no
0	XLOC_081067	TCONS_00081311	AFAP1L2	rna8772	sense	intergenic	13261	same_strand	upstream	no
1	XLOC_104163	TCONS_00104508	TJP1	rna12229	sense	genic	0	nested	intronic	no
0	XLOC_104163	TCONS_00104508	TJP1	rna12228	sense	genic	0	nested	intronic	no
0	XLOC_104163	TCONS_00104508	TJP1	rna12226	sense	genic	0	nested	intronic	no
0	XLOC_104163	TCONS_00104508	TJP1	rna12223	sense	genic	0	nested	intronic	no
0	XLOC_104163	TCONS_00104508	TJP1	rna12227	sense	genic	0	nested	intronic	no
0	XLOC_104163	TCONS_00104508	TJP1	rna12225	sense	genic	0	nested	intronic	no
0	XLOC_104163	TCONS_00104508	TJP1	rna12224	sense	genic	0	nested	intronic	no
0	XLOC_104163	TCONS_00104508	TJP1	rna12222	sense	genic	0	nested	intronic	no
0	XLOC_104163	TCONS_00104508	TJP1	rna12221	sense	genic	0	nested	intronic	no
1	XLOC_310039	TCONS_00311030	PRDX3	rna35048	sense	intergenic	1425	same_strand	upstream	no
0	XLOC_310039	TCONS_00311030	SFXN4	rna35049	sense	intergenic	8506	same_strand	upstream	no
1	XLOC_305721	TCONS_00306702	TCF4	rna34521	antisense	intergenic	29417	divergent	upstream	no
1	XLOC_296773	TCONS_00297713	CARS2	rna33723	antisense	intergenic	417	divergent	upstream	no
0	XLOC_296773	TCONS_00297713	ING1	rna33724	sense	intergenic	1887	same_strand	upstream	yes
1	XLOC_316689	TCONS_00317694	BMPER	rna35570	sense	genic	0	nested	intronic	no
1	XLOC_026446	TCONS_00026525	LOC106041525	rna2711	antisense	intergenic	74531	divergent	upstream	yes
0	XLOC_026446	TCONS_00026525	LOC106041525	rna2712	antisense	intergenic	74531	divergent	upstream	yes
1	XLOC_256808	TCONS_00257630	LOC106042140	rna29331	sense	intergenic	11316	same_strand	downstream	no
0	XLOC_256808	TCONS_00257630	LOC106042140	rna29332	sense	intergenic	13674	same_strand	downstream	no
1	XLOC_068835	TCONS_00069037	ULK1	rna7435	sense	intergenic	2620	same_strand	upstream	yes
1	XLOC_159432	TCONS_00159952	COBL	rna18002	sense	genic	0	nested	intronic	no
0	XLOC_159432	TCONS_00159952	COBL	rna18000	sense	genic	0	nested	intronic	no
0	XLOC_159432	TCONS_00159952	LOC106036569	rna18007	antisense	intergenic	9724	divergent	upstream	no
0	XLOC_159432	TCONS_00159952	COBL	rna18003	sense	genic	0	nested	intronic	no
0	XLOC_159432	TCONS_00159952	COBL	rna18004	sense	genic	0	nested	intronic	no
0	XLOC_159432	TCONS_00159952	COBL	rna18006	sense	genic	0	nested	intronic	no
0	XLOC_159432	TCONS_00159952	COBL	rna17999	sense	genic	0	nested	intronic	no
0	XLOC_159432	TCONS_00159952	COBL	rna18001	sense	genic	0	nested	intronic	no
0	XLOC_159432	TCONS_00159952	COBL	rna18005	sense	genic	0	nested	intronic	no
1	XLOC_148431	TCONS_00148905	LOC106035813	rna16596	sense	intergenic	10916	same_strand	downstream	no
1	XLOC_096835	TCONS_00097141	LOC106032991	rna10759	antisense	intergenic	47230	convergent	downstream	no
0	XLOC_096835	TCONS_00097141	LOC106032991	rna10760	antisense	intergenic	47230	convergent	downstream	no
1	XLOC_309927	TCONS_00310916	LOC106045190	rna35003	sense	intergenic	2519	same_strand	downstream	no
1	XLOC_218147	TCONS_00218845	LOC106039848	rna24725	antisense	intergenic	58	convergent	downstream	no
1	XLOC_034838	TCONS_00034945	DOCK4	rna4032	sense	intergenic	4511	same_strand	upstream	no
1	XLOC_356791	TCONS_00357962	LOC106049464	rna42275	sense	genic	0	nested	intronic	no
1	XLOC_214951	TCONS_00215642	LOC106039622	rna24322	antisense	intergenic	4605	convergent	downstream	no
1	XLOC_075313	TCONS_00075538	MEIS2	rna8350	sense	intergenic	12753	same_strand	downstream	yes
1	XLOC_152093	TCONS_00152582	IGSF5	rna17220	antisense	intergenic	78	divergent	upstream	yes
0	XLOC_152093	TCONS_00152582	B3GALT5	rna17221	antisense	intergenic	8558	convergent	downstream	no
1	XLOC_233930	TCONS_00234669	RBBP8NL	rna26779	sense	intergenic	4277	same_strand	downstream	no
0	XLOC_233930	TCONS_00234669	CABLES2	rna26780	sense	intergenic	6715	same_strand	upstream	no
1	XLOC_090826	TCONS_00091111	LOC106032637	rna9972	sense	intergenic	2461	same_strand	downstream	no
1	XLOC_237673	TCONS_00238431	LOC106041016	rna27163	sense	intergenic	4803	same_strand	downstream	no
0	XLOC_237673	TCONS_00238431	LOC106041016	rna27165	sense	intergenic	4803	same_strand	downstream	no
0	XLOC_237673	TCONS_00238431	LOC106041016	rna27167	sense	intergenic	4803	same_strand	downstream	no
0	XLOC_237673	TCONS_00238431	LOC106041016	rna27164	sense	intergenic	4803	same_strand	downstream	no
0	XLOC_237673	TCONS_00238431	LOC106041016	rna27166	sense	intergenic	4803	same_strand	downstream	no
1	XLOC_294267	TCONS_00295199	TULP4	rna33357	sense	genic	0	nested	intronic	no
0	XLOC_294267	TCONS_00295199	TULP4	rna33358	sense	genic	0	nested	intronic	no
0	XLOC_294267	TCONS_00295199	TULP4	rna33359	sense	genic	0	nested	intronic	no
1	XLOC_010847	TCONS_00010874	BTBD7	rna1755	sense	genic	0	nested	intronic	no
1	XLOC_098985	TCONS_00099302	LOC106032948	rna10941	antisense	intergenic	178	divergent	upstream	no
1	XLOC_352512	TCONS_00353655	LOC106048823	rna41339	sense	intergenic	4199	same_strand	upstream	no
1	XLOC_263181	TCONS_00264019	ANKRD50	rna29834	sense	intergenic	29065	same_strand	upstream	yes
1	XLOC_152093	TCONS_00152583	IGSF5	rna17220	antisense	intergenic	81	divergent	upstream	yes
0	XLOC_152093	TCONS_00152583	B3GALT5	rna17221	antisense	intergenic	8558	convergent	downstream	no
1	XLOC_301252	TCONS_00302216	SSU72	rna34008	sense	genic	0	nested	intronic	no
1	XLOC_288007	TCONS_00288924	LOC106043818	rna32558	antisense	intergenic	14019	convergent	downstream	no
0	XLOC_288007	TCONS_00288924	LOC106043818	rna32559	antisense	intergenic	14019	convergent	downstream	no
0	XLOC_288007	TCONS_00288924	LOC106043818	rna32557	antisense	intergenic	14019	convergent	downstream	no
1	XLOC_001905	TCONS_00001911	RTKN2	rna733	sense	genic	0	nested	intronic	yes
0	XLOC_001905	TCONS_00001911	RTKN2	rna731	sense	genic	0	nested	intronic	yes
0	XLOC_001905	TCONS_00001911	RTKN2	rna735	sense	genic	0	nested	intronic	yes
0	XLOC_001905	TCONS_00001911	RTKN2	rna736	sense	genic	0	nested	intronic	yes
0	XLOC_001905	TCONS_00001911	RTKN2	rna732	sense	genic	0	nested	intronic	yes
0	XLOC_001905	TCONS_00001911	RTKN2	rna737	sense	genic	0	nested	intronic	yes
0	XLOC_001905	TCONS_00001911	RTKN2	rna734	sense	genic	0	nested	intronic	yes
0	XLOC_001905	TCONS_00001911	RTKN2	rna730	sense	genic	0	nested	intronic	yes
1	XLOC_196918	TCONS_00197544	ATRX	rna22048	sense	intergenic	2492	same_strand	upstream	no
0	XLOC_196918	TCONS_00197544	MAGT1	rna22049	sense	intergenic	5890	same_strand	downstream	no
1	XLOC_048882	TCONS_00049033	LOC106030315	rna5694	sense	intergenic	74	same_strand	downstream	no
0	XLOC_048882	TCONS_00049033	LOC106030315	rna5692	sense	intergenic	74	same_strand	downstream	no
0	XLOC_048882	TCONS_00049033	LOC106030315	rna5693	sense	intergenic	74	same_strand	downstream	no
0	XLOC_048882	TCONS_00049033	OTUD1	rna5691	sense	intergenic	855	same_strand	upstream	yes
0	XLOC_048882	TCONS_00049033	LOC106030315	rna5695	sense	intergenic	74	same_strand	downstream	no
1	XLOC_358313	TCONS_00359490	LOC106049880	rna42818	antisense	intergenic	4214	convergent	downstream	no
1	XLOC_346546	TCONS_00347664	LOC106048113	rna40256	sense	intergenic	5203	same_strand	upstream	no
1	XLOC_289159	TCONS_00290078	TRIO	rna32615	sense	genic	0	nested	intronic	no
1	XLOC_119043	TCONS_00119419	HDAC4	rna13798	sense	intergenic	60	same_strand	downstream	no
0	XLOC_119043	TCONS_00119419	HDAC4	rna13788	sense	intergenic	60	same_strand	downstream	no
0	XLOC_119043	TCONS_00119419	HDAC4	rna13797	sense	intergenic	60	same_strand	downstream	no
0	XLOC_119043	TCONS_00119419	HDAC4	rna13796	sense	intergenic	60	same_strand	downstream	no
0	XLOC_119043	TCONS_00119419	HDAC4	rna13791	sense	intergenic	60	same_strand	downstream	no
0	XLOC_119043	TCONS_00119419	HDAC4	rna13795	sense	intergenic	60	same_strand	downstream	no
0	XLOC_119043	TCONS_00119419	LOC106034579	rna13800	sense	intergenic	5456	same_strand	upstream	no
0	XLOC_119043	TCONS_00119419	HDAC4	rna13799	sense	intergenic	60	same_strand	downstream	no
0	XLOC_119043	TCONS_00119419	HDAC4	rna13792	sense	intergenic	60	same_strand	downstream	no
0	XLOC_119043	TCONS_00119419	HDAC4	rna13790	sense	intergenic	60	same_strand	downstream	no
0	XLOC_119043	TCONS_00119419	HDAC4	rna13789	sense	intergenic	60	same_strand	downstream	no
0	XLOC_119043	TCONS_00119419	LOC106034579	rna13801	sense	intergenic	5456	same_strand	upstream	no
0	XLOC_119043	TCONS_00119419	HDAC4	rna13793	sense	intergenic	60	same_strand	downstream	no
0	XLOC_119043	TCONS_00119419	LOC106034446	gene6292	sense	intergenic	455	same_strand	upstream	no
0	XLOC_119043	TCONS_00119419	HDAC4	rna13794	sense	intergenic	60	same_strand	downstream	no
1	XLOC_103284	TCONS_00103625	PDGFA	rna11856	sense	genic	0	nested	intronic	no
1	XLOC_182800	TCONS_00183395	ZDHHC9	rna20205	antisense	intergenic	1761	divergent	upstream	yes
0	XLOC_182800	TCONS_00183395	UTP14A	rna20206	sense	intergenic	2324	same_strand	upstream	no
0	XLOC_182800	TCONS_00183395	LOC106037774	rna20207	antisense	intergenic	6801	convergent	downstream	no
0	XLOC_182800	TCONS_00183395	LOC106037774	rna20208	antisense	intergenic	6801	convergent	downstream	no
1	XLOC_334251	TCONS_00335319	EIF5	rna38269	sense	intergenic	3570	same_strand	downstream	no
1	XLOC_224010	TCONS_00224711	SUSD3	rna25355	sense	genic	0	nested	intronic	no
0	XLOC_224010	TCONS_00224711	SUSD3	rna25357	sense	intergenic	7721	same_strand	upstream	no
0	XLOC_224010	TCONS_00224711	SUSD3	rna25354	sense	genic	0	nested	intronic	no
0	XLOC_224010	TCONS_00224711	SUSD3	rna25356	sense	intergenic	6467	same_strand	upstream	no
1	XLOC_308271	TCONS_00309259	SPTLC1	rna34884	sense	intergenic	1151	same_strand	downstream	no
0	XLOC_308271	TCONS_00309259	TRNAG-GCC	rna34882	sense	intergenic	6710	same_strand	upstream	no
0	XLOC_308271	TCONS_00309259	LOC106045094	rna34883	antisense	intergenic	4263	convergent	downstream	no
1	XLOC_358418	TCONS_00359595	LOC106049935	rna42900	sense	genic	0	nested	intronic	no
0	XLOC_358418	TCONS_00359595	LOC106049925	rna42902	antisense	intergenic	8950	divergent	upstream	no
0	XLOC_358418	TCONS_00359595	TRIM15	rna42898	antisense	intergenic	4556	convergent	downstream	no
0	XLOC_358418	TCONS_00359595	LOC106049935	rna42899	sense	genic	0	nested	intronic	no
0	XLOC_358418	TCONS_00359595	LOC106049928	rna42901	sense	intergenic	4632	same_strand	downstream	no
1	XLOC_078187	TCONS_00078415	EAPP	rna8459	sense	intergenic	11565	same_strand	downstream	no
0	XLOC_078187	TCONS_00078415	SNX6	rna8460	sense	intergenic	17387	same_strand	downstream	no
1	XLOC_082142	TCONS_00082386	ATP11B	rna9050	sense	intergenic	50480	same_strand	upstream	no
0	XLOC_082142	TCONS_00082386	ATP11B	rna9054	sense	intergenic	50480	same_strand	upstream	no
0	XLOC_082142	TCONS_00082386	ATP11B	rna9053	sense	intergenic	50480	same_strand	upstream	no
0	XLOC_082142	TCONS_00082386	ATP11B	rna9051	sense	intergenic	50480	same_strand	upstream	no
0	XLOC_082142	TCONS_00082386	ATP11B	rna9049	sense	intergenic	50480	same_strand	upstream	no
0	XLOC_082142	TCONS_00082386	ATP11B	rna9052	sense	intergenic	50480	same_strand	upstream	no
0	XLOC_082142	TCONS_00082386	ATP11B	rna9055	sense	intergenic	50480	same_strand	upstream	no
1	XLOC_073079	TCONS_00073297	LOC106031476	rna7868	antisense	intergenic	5082	convergent	downstream	no
1	XLOC_158792	TCONS_00159311	LOC106036475	rna17872	sense	genic	0	nested	intronic	no
0	XLOC_158792	TCONS_00159311	LOC106036475	rna17875	sense	intergenic	59	same_strand	upstream	no
0	XLOC_158792	TCONS_00159311	LOC106036475	rna17871	sense	genic	0	nested	intronic	no
0	XLOC_158792	TCONS_00159311	LOC106036475	rna17865	sense	genic	0	nested	intronic	no
0	XLOC_158792	TCONS_00159311	LOC106036475	rna17864	sense	genic	0	nested	intronic	no
0	XLOC_158792	TCONS_00159311	LOC106036475	rna17870	sense	genic	0	nested	intronic	no
0	XLOC_158792	TCONS_00159311	LOC106036475	rna17867	sense	genic	0	nested	intronic	no
0	XLOC_158792	TCONS_00159311	LOC106036475	rna17874	sense	genic	0	nested	intronic	no
0	XLOC_158792	TCONS_00159311	LOC106036475	rna17869	sense	genic	0	nested	intronic	no
0	XLOC_158792	TCONS_00159311	LOC106036475	rna17863	sense	genic	0	nested	intronic	no
0	XLOC_158792	TCONS_00159311	LOC106036475	rna17866	sense	genic	0	nested	intronic	no
0	XLOC_158792	TCONS_00159311	LOC106036475	rna17868	sense	genic	0	nested	intronic	no
0	XLOC_158792	TCONS_00159311	LOC106036475	rna17873	sense	genic	0	nested	intronic	no
1	XLOC_331276	TCONS_00332327	FAM198A	rna37634	antisense	intergenic	5674	divergent	upstream	no
0	XLOC_331276	TCONS_00332327	RPL14	rna37635	antisense	intergenic	9478	convergent	downstream	no
1	XLOC_167140	TCONS_00167685	LOC106036886	rna18839	sense	genic	0	nested	intronic	no
1	XLOC_109137	TCONS_00109497	LRRC8D	rna12991	sense	genic	0	nested	intronic	no
0	XLOC_109137	TCONS_00109497	LRRC8D	rna12996	sense	intergenic	1364	same_strand	upstream	no
0	XLOC_109137	TCONS_00109497	LRRC8D	rna12995	sense	intergenic	809	same_strand	upstream	no
0	XLOC_109137	TCONS_00109497	LRRC8D	rna12993	sense	genic	0	nested	intronic	no
0	XLOC_109137	TCONS_00109497	LRRC8D	rna12992	sense	genic	0	nested	intronic	no
0	XLOC_109137	TCONS_00109497	LRRC8D	rna12994	sense	genic	0	nested	intronic	no
0	XLOC_109137	TCONS_00109497	LRRC8D	rna12997	sense	intergenic	1405	same_strand	upstream	no
1	XLOC_008121	TCONS_00008145	ZFYVE28	rna1259	antisense	genic	0	nested	intronic	no
1	XLOC_270034	TCONS_00270901	LOC106042824	rna30535	sense	genic	0	nested	intronic	no
1	XLOC_064035	TCONS_00064227	LOC106030860	rna6679	antisense	genic	0	nested	intronic	no
1	XLOC_038868	TCONS_00038994	CRIM1	rna4326	antisense	intergenic	34834	divergent	upstream	yes
1	XLOC_151412	TCONS_00151895	ZADH2	rna17010	antisense	intergenic	4166	divergent	upstream	yes
1	XLOC_028918	TCONS_00029010	TPCN2	rna3442	sense	intergenic	17315	same_strand	downstream	no
1	XLOC_036563	TCONS_00036674	VEGFA	rna4408	sense	intergenic	25752	same_strand	downstream	no
1	XLOC_137905	TCONS_00138337	RNGTT	rna15782	sense	genic	0	nested	intronic	no
0	XLOC_137905	TCONS_00138337	RNGTT	rna15781	sense	genic	0	nested	intronic	no
0	XLOC_137905	TCONS_00138337	RNGTT	rna15780	sense	genic	0	nested	intronic	no
1	XLOC_109636	TCONS_00109998	PTPRF	rna12781	sense	intergenic	45645	same_strand	upstream	no
0	XLOC_109636	TCONS_00109998	PTPRF	rna12771	sense	intergenic	45645	same_strand	upstream	no
0	XLOC_109636	TCONS_00109998	PTPRF	rna12778	sense	intergenic	45645	same_strand	upstream	no
0	XLOC_109636	TCONS_00109998	PTPRF	rna12772	sense	intergenic	45645	same_strand	upstream	no
0	XLOC_109636	TCONS_00109998	PTPRF	rna12784	sense	intergenic	45645	same_strand	upstream	no
0	XLOC_109636	TCONS_00109998	PTPRF	rna12776	sense	intergenic	45645	same_strand	upstream	no
0	XLOC_109636	TCONS_00109998	PTPRF	rna12783	sense	intergenic	45645	same_strand	upstream	no
0	XLOC_109636	TCONS_00109998	PTPRF	rna12773	sense	intergenic	45645	same_strand	upstream	no
0	XLOC_109636	TCONS_00109998	PTPRF	rna12782	sense	intergenic	45645	same_strand	upstream	no
0	XLOC_109636	TCONS_00109998	PTPRF	rna12777	sense	intergenic	45645	same_strand	upstream	no
0	XLOC_109636	TCONS_00109998	PTPRF	rna12780	sense	intergenic	45645	same_strand	upstream	no
0	XLOC_109636	TCONS_00109998	PTPRF	rna12779	sense	intergenic	45645	same_strand	upstream	no
0	XLOC_109636	TCONS_00109998	PTPRF	rna12774	sense	intergenic	45645	same_strand	upstream	no
0	XLOC_109636	TCONS_00109998	PTPRF	rna12775	sense	intergenic	45645	same_strand	upstream	no
1	XLOC_210175	TCONS_00210854	ATG4B	rna23383	sense	intergenic	239	same_strand	downstream	no
0	XLOC_210175	TCONS_00210854	DTYMK	rna23381	antisense	intergenic	788	convergent	downstream	no
0	XLOC_210175	TCONS_00210854	ING5	rna23377	sense	intergenic	9512	same_strand	upstream	no
0	XLOC_210175	TCONS_00210854	DTYMK	rna23379	antisense	intergenic	788	convergent	downstream	no
0	XLOC_210175	TCONS_00210854	ING5	rna23378	sense	intergenic	9512	same_strand	upstream	no
0	XLOC_210175	TCONS_00210854	DTYMK	rna23382	antisense	intergenic	788	convergent	downstream	no
0	XLOC_210175	TCONS_00210854	DTYMK	rna23380	antisense	intergenic	788	convergent	downstream	no
1	XLOC_283587	TCONS_00284494	SMAD3	rna32178	sense	genic	0	nested	intronic	no
1	XLOC_140739	TCONS_00141186	LOC106035552	rna16100	antisense	intergenic	3295	convergent	downstream	no
1	XLOC_297048	TCONS_00297990	IRS2	rna33709	sense	intergenic	5122	same_strand	downstream	no
1	XLOC_142216	TCONS_00142667	CD36	rna16147	antisense	intergenic	4263	divergent	upstream	no
0	XLOC_142216	TCONS_00142667	CD36	rna16148	antisense	intergenic	4321	divergent	upstream	no
0	XLOC_142216	TCONS_00142667	CD36	rna16149	antisense	intergenic	5380	divergent	upstream	no
0	XLOC_142216	TCONS_00142667	CD36	rna16150	antisense	intergenic	5380	divergent	upstream	no
1	XLOC_280452	TCONS_00281348	PDE8A	rna31665	sense	genic	0	nested	intronic	no
0	XLOC_280452	TCONS_00281348	PDE8A	rna31666	sense	genic	0	nested	intronic	no
0	XLOC_280452	TCONS_00281348	PDE8A	rna31664	sense	genic	0	nested	intronic	no
0	XLOC_280452	TCONS_00281348	PDE8A	rna31667	sense	genic	0	nested	intronic	no
0	XLOC_280452	TCONS_00281348	PDE8A	rna31663	sense	genic	0	nested	intronic	no
1	XLOC_133326	TCONS_00133736	LOC106035178	rna15357	sense	genic	0	nested	intronic	no
1	XLOC_175698	TCONS_00176266	ME2	rna19692	sense	intergenic	205	same_strand	upstream	no
0	XLOC_175698	TCONS_00176266	MAPK4	rna19690	sense	intergenic	9472	same_strand	downstream	no
0	XLOC_175698	TCONS_00176266	MAPK4	rna19689	sense	intergenic	9472	same_strand	downstream	no
0	XLOC_175698	TCONS_00176266	MAPK4	rna19691	sense	intergenic	9472	same_strand	downstream	no
1	XLOC_307678	TCONS_00308664	S1PR3	rna34848	sense	intergenic	24902	same_strand	upstream	no
0	XLOC_307678	TCONS_00308664	S1PR3	rna34849	sense	intergenic	25616	same_strand	upstream	no
0	XLOC_307678	TCONS_00308664	LOC106045090	rna34847	antisense	intergenic	24940	divergent	upstream	no
1	XLOC_096835	TCONS_00097139	LOC106032991	rna10759	antisense	intergenic	50709	convergent	downstream	no
0	XLOC_096835	TCONS_00097139	LOC106032991	rna10760	antisense	intergenic	50709	convergent	downstream	no
1	XLOC_049744	TCONS_00049900	FAM135A	rna5848	antisense	intergenic	16738	divergent	upstream	no
1	XLOC_008151	TCONS_00008175	FAM193A	rna1270	sense	genic	0	nested	intronic	no
0	XLOC_008151	TCONS_00008175	FAM193A	rna1272	sense	genic	0	nested	intronic	no
0	XLOC_008151	TCONS_00008175	FAM193A	rna1271	sense	genic	0	nested	intronic	no
1	XLOC_192831	TCONS_00193448	SNTG1	rna21827	sense	intergenic	51440	same_strand	downstream	no
0	XLOC_192831	TCONS_00193448	SNTG1	rna21828	sense	intergenic	51440	same_strand	downstream	no
1	XLOC_292867	TCONS_00293798	LOC106044094	rna33125	sense	intergenic	1187	same_strand	upstream	no
0	XLOC_292867	TCONS_00293798	LOC106044078	rna33126	sense	intergenic	7736	same_strand	upstream	no
1	XLOC_103312	TCONS_00103653	LOC106033536	rna11880	sense	intergenic	453	same_strand	downstream	no
0	XLOC_103312	TCONS_00103653	LOC106033536	rna11881	sense	intergenic	4821	same_strand	downstream	no
0	XLOC_103312	TCONS_00103653	LOC106033532	rna11879	sense	intergenic	7246	same_strand	upstream	yes
1	XLOC_316988	TCONS_00317993	AR	rna35698	antisense	intergenic	25599	divergent	upstream	no
1	XLOC_312253	TCONS_00313250	PARD3	rna35240	sense	intergenic	2644	same_strand	downstream	no
0	XLOC_312253	TCONS_00313250	PARD3	rna35239	sense	intergenic	2644	same_strand	downstream	no
0	XLOC_312253	TCONS_00313250	PARD3	rna35233	sense	intergenic	2644	same_strand	downstream	no
0	XLOC_312253	TCONS_00313250	PARD3	rna35231	sense	intergenic	2644	same_strand	downstream	no
0	XLOC_312253	TCONS_00313250	PARD3	rna35241	sense	intergenic	2644	same_strand	downstream	no
0	XLOC_312253	TCONS_00313250	PARD3	rna35238	sense	intergenic	2644	same_strand	downstream	no
0	XLOC_312253	TCONS_00313250	PARD3	rna35236	sense	intergenic	2644	same_strand	downstream	no
0	XLOC_312253	TCONS_00313250	PARD3	rna35232	sense	intergenic	2644	same_strand	downstream	no
0	XLOC_312253	TCONS_00313250	PARD3	rna35230	sense	intergenic	2644	same_strand	downstream	no
0	XLOC_312253	TCONS_00313250	PARD3	rna35237	sense	intergenic	2644	same_strand	downstream	no
0	XLOC_312253	TCONS_00313250	PARD3	rna35242	sense	intergenic	2644	same_strand	downstream	no
0	XLOC_312253	TCONS_00313250	PARD3	rna35235	sense	intergenic	2644	same_strand	downstream	no
0	XLOC_312253	TCONS_00313250	PARD3	rna35234	sense	intergenic	2644	same_strand	downstream	no
1	XLOC_278608	TCONS_00279500	IL1RAPL1	rna31494	sense	intergenic	42747	same_strand	downstream	no
0	XLOC_278608	TCONS_00279500	IL1RAPL1	rna31495	sense	intergenic	42747	same_strand	downstream	no
0	XLOC_278608	TCONS_00279500	IL1RAPL1	rna31492	sense	intergenic	42747	same_strand	downstream	no
0	XLOC_278608	TCONS_00279500	IL1RAPL1	rna31493	sense	intergenic	42747	same_strand	downstream	no
0	XLOC_278608	TCONS_00279500	IL1RAPL1	rna31490	sense	intergenic	42747	same_strand	downstream	no
1	XLOC_244768	TCONS_00245552	PPFIA2	rna28121	sense	genic	0	nested	intronic	yes
0	XLOC_244768	TCONS_00245552	PPFIA2	rna28119	sense	genic	0	nested	intronic	yes
0	XLOC_244768	TCONS_00245552	PPFIA2	rna28120	sense	genic	0	nested	intronic	yes
1	XLOC_167858	TCONS_00168403	CNOT4	rna18993	sense	genic	0	nested	intronic	no
0	XLOC_167858	TCONS_00168403	CNOT4	rna18990	sense	genic	0	nested	intronic	no
0	XLOC_167858	TCONS_00168403	CNOT4	rna18992	sense	genic	0	nested	intronic	no
0	XLOC_167858	TCONS_00168403	CNOT4	rna18995	sense	genic	0	nested	intronic	no
0	XLOC_167858	TCONS_00168403	CNOT4	rna18991	sense	genic	0	nested	intronic	no
0	XLOC_167858	TCONS_00168403	CNOT4	rna18994	sense	genic	0	nested	intronic	no
0	XLOC_167858	TCONS_00168403	CNOT4	rna18989	sense	genic	0	nested	intronic	no
0	XLOC_167858	TCONS_00168403	CNOT4	rna18996	sense	genic	0	nested	intronic	no
1	XLOC_293949	TCONS_00294880	REC114	rna33322	antisense	genic	0	nested	intronic	no
0	XLOC_293949	TCONS_00294880	REC114	rna33323	antisense	genic	0	nested	intronic	no
0	XLOC_293949	TCONS_00294880	REC114	rna33321	antisense	genic	0	nested	intronic	no
1	XLOC_255444	TCONS_00256257	CTTNBP2	rna29185	sense	genic	0	nested	intronic	yes
1	XLOC_205582	TCONS_00206249	LOC106039008	rna22947	antisense	intergenic	4194	convergent	downstream	no
0	XLOC_205582	TCONS_00206249	LOC106039008	rna22954	antisense	intergenic	6449	convergent	downstream	no
0	XLOC_205582	TCONS_00206249	LOC106039008	rna22950	antisense	intergenic	4194	convergent	downstream	no
0	XLOC_205582	TCONS_00206249	LOC106039008	rna22946	antisense	intergenic	4194	convergent	downstream	no
0	XLOC_205582	TCONS_00206249	LOC106039008	rna22952	antisense	intergenic	4194	convergent	downstream	no
0	XLOC_205582	TCONS_00206249	LOC106039008	rna22948	antisense	intergenic	4194	convergent	downstream	no
0	XLOC_205582	TCONS_00206249	LOC106039008	rna22949	antisense	intergenic	4194	convergent	downstream	no
0	XLOC_205582	TCONS_00206249	LOC106039008	rna22951	antisense	intergenic	4194	convergent	downstream	no
0	XLOC_205582	TCONS_00206249	LOC106039008	rna22953	antisense	intergenic	4194	convergent	downstream	no
1	XLOC_122163	TCONS_00122546	LOC106034839	rna14143	sense	intergenic	1255	same_strand	downstream	no
1	XLOC_238614	TCONS_00239375	WBSCR27	rna27253	antisense	intergenic	13940	divergent	upstream	yes
0	XLOC_238614	TCONS_00239375	LOC106041045	rna27252	sense	intergenic	16486	same_strand	downstream	no
1	XLOC_355147	TCONS_00356311	WNT4	rna41792	antisense	intergenic	30001	divergent	upstream	no
1	XLOC_334859	TCONS_00335927	TTLL9	rna38541	sense	genic	0	nested	intronic	no
0	XLOC_334859	TCONS_00335927	PDRG1	rna38543	antisense	intergenic	8081	convergent	downstream	no
0	XLOC_334859	TCONS_00335927	DUSP15	rna38536	antisense	intergenic	2923	divergent	upstream	no
0	XLOC_334859	TCONS_00335927	TTLL9	rna38542	sense	genic	0	nested	intronic	no
0	XLOC_334859	TCONS_00335927	TTLL9	rna38540	sense	genic	0	nested	intronic	no
0	XLOC_334859	TCONS_00335927	TTLL9	rna38539	sense	genic	0	nested	intronic	no
0	XLOC_334859	TCONS_00335927	DUSP15	rna38535	antisense	intergenic	6511	divergent	upstream	no
0	XLOC_334859	TCONS_00335927	TTLL9	rna38538	sense	genic	0	nested	intronic	no
0	XLOC_334859	TCONS_00335927	TTLL9	rna38537	sense	genic	0	nested	intronic	no
1	XLOC_091436	TCONS_00091725	LOC106032552	rna10102	antisense	intergenic	4830	convergent	downstream	no
1	XLOC_001837	TCONS_00001842	JMJD1C	rna719	sense	intergenic	40742	same_strand	upstream	yes
0	XLOC_001837	TCONS_00001842	LOC106031286	rna718	sense	intergenic	47480	same_strand	downstream	no
1	XLOC_017357	TCONS_00017420	IFT57	rna2251	antisense	intergenic	3839	divergent	upstream	no
0	XLOC_017357	TCONS_00017420	IFT57	rna2252	antisense	intergenic	3840	divergent	upstream	no
0	XLOC_017357	TCONS_00017420	HHLA2	rna2255	sense	intergenic	5369	same_strand	upstream	no
0	XLOC_017357	TCONS_00017420	IFT57	rna2253	antisense	intergenic	5040	divergent	upstream	no
0	XLOC_017357	TCONS_00017420	HHLA2	rna2254	sense	intergenic	5369	same_strand	upstream	no
0	XLOC_017357	TCONS_00017420	HHLA2	rna2256	sense	intergenic	5369	same_strand	upstream	no
1	XLOC_039394	TCONS_00039527	MOCS1	rna4471	sense	intergenic	12993	same_strand	upstream	no
0	XLOC_039394	TCONS_00039527	MOCS1	rna4472	sense	intergenic	12999	same_strand	upstream	no
1	XLOC_101375	TCONS_00101704	LOC106033277	rna11352	sense	intergenic	28281	same_strand	upstream	no
1	XLOC_039151	TCONS_00039282	LOC106029743	rna4412	antisense	intergenic	48485	convergent	downstream	no
0	XLOC_039151	TCONS_00039282	LOC106029743	rna4414	antisense	intergenic	48489	convergent	downstream	no
0	XLOC_039151	TCONS_00039282	LOC106029743	rna4413	antisense	intergenic	48486	convergent	downstream	no
1	XLOC_092056	TCONS_00092346	MCHR2	rna10132	sense	intergenic	37183	same_strand	downstream	no
1	XLOC_140133	TCONS_00140574	MAGI1	rna15970	sense	genic	0	nested	intronic	no
0	XLOC_140133	TCONS_00140574	MAGI1	rna15971	sense	genic	0	nested	intronic	no
0	XLOC_140133	TCONS_00140574	MAGI1	rna15963	sense	genic	0	nested	intronic	no
0	XLOC_140133	TCONS_00140574	MAGI1	rna15969	sense	genic	0	nested	intronic	no
0	XLOC_140133	TCONS_00140574	MAGI1	rna15964	sense	genic	0	nested	intronic	no
0	XLOC_140133	TCONS_00140574	MAGI1	rna15972	sense	genic	0	nested	intronic	no
0	XLOC_140133	TCONS_00140574	MAGI1	rna15967	sense	genic	0	nested	intronic	no
0	XLOC_140133	TCONS_00140574	MAGI1	rna15966	sense	genic	0	nested	intronic	no
0	XLOC_140133	TCONS_00140574	MAGI1	rna15968	sense	genic	0	nested	intronic	no
0	XLOC_140133	TCONS_00140574	MAGI1	rna15973	sense	genic	0	nested	intronic	no
0	XLOC_140133	TCONS_00140574	MAGI1	rna15962	sense	genic	0	nested	intronic	no
0	XLOC_140133	TCONS_00140574	MAGI1	rna15965	sense	genic	0	nested	intronic	no
1	XLOC_273042	TCONS_00273917	LOC106042974	rna30833	sense	intergenic	2399	same_strand	downstream	no
1	XLOC_149672	TCONS_00150152	GALNT12	rna16915	sense	genic	0	nested	intronic	no
1	XLOC_280441	TCONS_00281336	PDE8A	rna31665	sense	genic	0	nested	intronic	no
0	XLOC_280441	TCONS_00281336	PDE8A	rna31666	sense	genic	0	nested	intronic	no
0	XLOC_280441	TCONS_00281336	PDE8A	rna31664	sense	genic	0	nested	intronic	no
0	XLOC_280441	TCONS_00281336	PDE8A	rna31667	sense	genic	0	nested	intronic	no
0	XLOC_280441	TCONS_00281336	PDE8A	rna31663	sense	genic	0	nested	intronic	no
1	XLOC_182834	TCONS_00183429	LOC106037693	rna20269	antisense	intergenic	3832	divergent	upstream	no
0	XLOC_182834	TCONS_00183429	FAM199X	rna20265	sense	intergenic	3919	same_strand	downstream	no
0	XLOC_182834	TCONS_00183429	FAM199X	rna20268	sense	intergenic	3919	same_strand	downstream	no
0	XLOC_182834	TCONS_00183429	FAM199X	rna20266	sense	intergenic	3919	same_strand	downstream	no
1	XLOC_262290	TCONS_00263123	FBXL17	rna29679	antisense	intergenic	3095	convergent	downstream	no
1	XLOC_180486	TCONS_00181075	NXPH1	rna20011	sense	intergenic	2392	same_strand	upstream	yes
1	XLOC_342397	TCONS_00343501	SIAH2	rna39512	sense	intergenic	5083	same_strand	upstream	no
0	XLOC_342397	TCONS_00343501	LOC106047700	rna39508	sense	intergenic	8858	same_strand	downstream	no
0	XLOC_342397	TCONS_00343501	ERICH6	rna39516	sense	intergenic	9247	same_strand	upstream	no
0	XLOC_342397	TCONS_00343501	ERICH6	rna39514	sense	intergenic	9247	same_strand	upstream	no
0	XLOC_342397	TCONS_00343501	LOC106047700	rna39506	sense	intergenic	8858	same_strand	downstream	no
0	XLOC_342397	TCONS_00343501	LOC106047700	rna39511	sense	intergenic	8858	same_strand	downstream	no
0	XLOC_342397	TCONS_00343501	ERICH6	rna39513	sense	intergenic	9241	same_strand	upstream	no
0	XLOC_342397	TCONS_00343501	LOC106047700	rna39510	sense	intergenic	8858	same_strand	downstream	no
0	XLOC_342397	TCONS_00343501	LOC106047700	rna39509	sense	intergenic	8858	same_strand	downstream	no
0	XLOC_342397	TCONS_00343501	LOC106047700	rna39507	sense	intergenic	8858	same_strand	downstream	no
0	XLOC_342397	TCONS_00343501	ERICH6	rna39515	sense	intergenic	9247	same_strand	upstream	no
1	XLOC_327967	TCONS_00329008	TFDP1	rna37292	sense	genic	0	nested	intronic	no
1	XLOC_289026	TCONS_00289944	LOC106043846	rna32579	antisense	genic	0	nested	intronic	no
0	XLOC_289026	TCONS_00289944	LOC106043840	rna32578	antisense	intergenic	9329	convergent	downstream	no
1	XLOC_344781	TCONS_00345894	LOC106047881	rna39901	sense	intergenic	778	same_strand	downstream	no
0	XLOC_344781	TCONS_00345894	LOC106047881	rna39900	sense	intergenic	778	same_strand	downstream	no
1	XLOC_269820	TCONS_00270681	BOD1	rna30491	sense	intergenic	2912	same_strand	upstream	no
1	XLOC_256634	TCONS_00257455	RPGR	rna29313	sense	genic	0	nested	intronic	no
0	XLOC_256634	TCONS_00257455	OTC	rna29311	antisense	intergenic	5161	divergent	upstream	no
1	XLOC_201504	TCONS_00202139	JDP2	rna22680	sense	intergenic	1178	same_strand	downstream	no
1	XLOC_270101	TCONS_00270969	STAB1	rna30547	sense	intergenic	588	same_strand	upstream	no
0	XLOC_270101	TCONS_00270969	NISCH	rna30546	sense	intergenic	3119	same_strand	downstream	no
1	XLOC_066782	TCONS_00066983	LMO3	rna6787	antisense	genic	0	nested	intronic	no
0	XLOC_066782	TCONS_00066983	LMO3	rna6792	antisense	genic	0	nested	intronic	no
0	XLOC_066782	TCONS_00066983	LMO3	rna6788	antisense	genic	0	nested	intronic	no
0	XLOC_066782	TCONS_00066983	LMO3	rna6790	antisense	genic	0	nested	intronic	no
0	XLOC_066782	TCONS_00066983	LMO3	rna6791	antisense	genic	0	nested	intronic	no
0	XLOC_066782	TCONS_00066983	LMO3	rna6789	antisense	genic	0	nested	intronic	no
1	XLOC_006022	TCONS_00006039	WAPAL	rna824	sense	genic	0	nested	intronic	no
0	XLOC_006022	TCONS_00006039	WAPAL	rna825	sense	genic	0	nested	intronic	no
0	XLOC_006022	TCONS_00006039	WAPAL	rna826	sense	genic	0	nested	intronic	no
0	XLOC_006022	TCONS_00006039	WAPAL	rna823	sense	genic	0	nested	intronic	no
1	XLOC_095844	TCONS_00096145	KLHL3	rna10384	sense	intergenic	106	same_strand	upstream	yes
0	XLOC_095844	TCONS_00096145	LOC106032789	rna10385	antisense	intergenic	1959	divergent	upstream	no
1	XLOC_354999	TCONS_00356163	ACADM	rna41763	antisense	intergenic	727	convergent	downstream	no
0	XLOC_354999	TCONS_00356163	LOC106049144	rna41761	sense	intergenic	7531	same_strand	downstream	no
0	XLOC_354999	TCONS_00356163	ACADM	rna41765	antisense	intergenic	1844	convergent	downstream	no
0	XLOC_354999	TCONS_00356163	LOC106049144	rna41762	sense	intergenic	7546	same_strand	downstream	no
0	XLOC_354999	TCONS_00356163	ACADM	rna41764	antisense	intergenic	1844	convergent	downstream	no
1	XLOC_124973	TCONS_00125363	FARS2	rna14681	sense	intergenic	4495	same_strand	downstream	no
1	XLOC_082926	TCONS_00083177	PLD1	rna8930	sense	intergenic	5568	same_strand	upstream	no
1	XLOC_128802	TCONS_00129206	INTS6	rna15012	sense	genic	0	nested	intronic	no
0	XLOC_128802	TCONS_00129206	INTS6	rna15011	sense	genic	0	nested	intronic	no
1	XLOC_278241	TCONS_00279131	SRPK2	rna31456	sense	genic	0	nested	intronic	no
1	XLOC_324877	TCONS_00325910	LOC106046336	rna37088	sense	intergenic	490	same_strand	upstream	no
0	XLOC_324877	TCONS_00325910	LOC106046335	rna37086	antisense	intergenic	8373	convergent	downstream	yes
0	XLOC_324877	TCONS_00325910	LOC106046335	rna37085	antisense	intergenic	8373	convergent	downstream	yes
0	XLOC_324877	TCONS_00325910	RNPS1	rna37089	antisense	intergenic	4199	divergent	upstream	no
0	XLOC_324877	TCONS_00325910	LOC106046337	rna37087	antisense	intergenic	4335	convergent	downstream	yes
0	XLOC_324877	TCONS_00325910	LOC106046335	rna37084	antisense	intergenic	8373	convergent	downstream	yes
1	XLOC_085300	TCONS_00085564	LOC106032373	rna9634	sense	intergenic	13257	same_strand	downstream	no
0	XLOC_085300	TCONS_00085564	LOC106032373	rna9633	sense	intergenic	13257	same_strand	downstream	no
1	XLOC_331220	TCONS_00332270	ZFHX3	rna37559	antisense	intergenic	68010	divergent	upstream	no
1	XLOC_298270	TCONS_00299215	LOC106044494	rna33825	antisense	intergenic	13246	convergent	downstream	no
1	XLOC_048381	TCONS_00048531	RPL15	rna5601	antisense	intergenic	5762	convergent	downstream	no
0	XLOC_048381	TCONS_00048531	NR1D2	rna5602	antisense	intergenic	6695	divergent	upstream	no
1	XLOC_329597	TCONS_00330644	PGGT1B	rna37445	sense	intergenic	4885	same_strand	downstream	no
0	XLOC_329597	TCONS_00330644	TRIM36	rna37448	sense	intergenic	8716	same_strand	upstream	no
0	XLOC_329597	TCONS_00330644	TRIM36	rna37446	sense	intergenic	8410	same_strand	upstream	no
0	XLOC_329597	TCONS_00330644	TRIM36	rna37447	sense	intergenic	8410	same_strand	upstream	no
1	XLOC_298090	TCONS_00299034	LOC106044502	rna33782	sense	intergenic	17712	same_strand	upstream	no
0	XLOC_298090	TCONS_00299034	LOC106044502	rna33783	sense	intergenic	18748	same_strand	upstream	no
1	XLOC_358531	TCONS_00359708	LOC106029347	rna42972	sense	intergenic	330	same_strand	upstream	no
0	XLOC_358531	TCONS_00359708	TRIM7	rna42969	antisense	intergenic	436	divergent	upstream	no
0	XLOC_358531	TCONS_00359708	TRIM7	rna42970	antisense	intergenic	1131	divergent	upstream	no
0	XLOC_358531	TCONS_00359708	TRIM7	rna42967	antisense	intergenic	436	divergent	upstream	no
0	XLOC_358531	TCONS_00359708	TRIM7	rna42966	antisense	intergenic	436	divergent	upstream	no
0	XLOC_358531	TCONS_00359708	LOC106029344	rna42965	antisense	intergenic	5596	divergent	upstream	no
0	XLOC_358531	TCONS_00359708	TRIM7	rna42971	antisense	intergenic	1131	divergent	upstream	no
0	XLOC_358531	TCONS_00359708	TRIM7	rna42968	antisense	intergenic	436	divergent	upstream	no
0	XLOC_358531	TCONS_00359708	LOC106029347	rna42973	sense	intergenic	336	same_strand	upstream	no
1	XLOC_201834	TCONS_00202470	LOC106038824	rna22757	sense	genic	0	nested	intronic	no
0	XLOC_201834	TCONS_00202470	LOC106038824	rna22759	sense	genic	0	nested	intronic	no
0	XLOC_201834	TCONS_00202470	LOC106038824	rna22762	sense	genic	0	nested	intronic	no
0	XLOC_201834	TCONS_00202470	LOC106038824	rna22756	sense	genic	0	nested	intronic	no
0	XLOC_201834	TCONS_00202470	LOC106038824	rna22755	sense	genic	0	nested	intronic	no
0	XLOC_201834	TCONS_00202470	LOC106038824	rna22761	sense	genic	0	nested	intronic	no
0	XLOC_201834	TCONS_00202470	LOC106038824	rna22758	sense	genic	0	nested	intronic	no
0	XLOC_201834	TCONS_00202470	LOC106038824	rna22760	sense	genic	0	nested	intronic	no
0	XLOC_201834	TCONS_00202470	LOC106038824	rna22763	sense	genic	0	nested	intronic	no
1	XLOC_275228	TCONS_00276108	FBXO11	rna31239	antisense	intergenic	29156	divergent	upstream	no
0	XLOC_275228	TCONS_00276108	FBXO11	rna31240	antisense	intergenic	29156	divergent	upstream	no
1	XLOC_324103	TCONS_00325131	LOC106046268	rna36950	sense	genic	0	nested	intronic	no
1	XLOC_088228	TCONS_00088506	CTGF	rna9854	antisense	intergenic	43445	divergent	upstream	yes
0	XLOC_088228	TCONS_00088506	LOC106032427	rna9855	sense	intergenic	48331	same_strand	upstream	no
1	XLOC_330126	TCONS_00331173	LOC106046551	rna37491	antisense	intergenic	24811	divergent	upstream	no
0	XLOC_330126	TCONS_00331173	LOC106046551	rna37490	antisense	intergenic	24811	divergent	upstream	no
0	XLOC_330126	TCONS_00331173	LOC106046551	rna37489	antisense	intergenic	24811	divergent	upstream	no
1	XLOC_300778	TCONS_00301740	THBS2	rna33938	sense	intergenic	15621	same_strand	downstream	no
0	XLOC_300778	TCONS_00301740	THBS2	rna33939	sense	intergenic	15621	same_strand	downstream	no
1	XLOC_144970	TCONS_00145433	LOC106035592	gene7408	antisense	genic	0	nested	intronic	no
1	XLOC_019612	TCONS_00019677	PLA1A	rna1901	sense	intergenic	2483	same_strand	upstream	no
0	XLOC_019612	TCONS_00019677	PLA1A	rna1898	sense	intergenic	2490	same_strand	upstream	no
0	XLOC_019612	TCONS_00019677	PLA1A	rna1899	sense	intergenic	2490	same_strand	upstream	no
0	XLOC_019612	TCONS_00019677	PLA1A	rna1900	sense	intergenic	2494	same_strand	upstream	no
0	XLOC_019612	TCONS_00019677	CD58	rna1902	antisense	intergenic	2538	divergent	upstream	no
1	XLOC_298270	TCONS_00299217	LOC106044494	rna33825	antisense	intergenic	39581	convergent	downstream	no
1	XLOC_091324	TCONS_00091612	LOC106032611	rna10084	antisense	intergenic	12683	divergent	upstream	no
0	XLOC_091324	TCONS_00091612	LOC106032611	rna10083	antisense	intergenic	12683	divergent	upstream	no
1	XLOC_292499	TCONS_00293426	TRIM9	rna33049	sense	genic	0	nested	intronic	no
1	XLOC_306353	TCONS_00307335	LOC106045004	rna34652	antisense	intergenic	3505	divergent	upstream	no
0	XLOC_306353	TCONS_00307335	UHRF1	rna34651	sense	intergenic	3890	same_strand	upstream	yes
1	XLOC_280338	TCONS_00281232	MEX3B	rna31634	sense	intergenic	14934	same_strand	upstream	no
0	XLOC_280338	TCONS_00281232	EFTUD1	rna31635	sense	intergenic	16378	same_strand	downstream	no
1	XLOC_312469	TCONS_00313468	LOC106045285	rna35190	sense	intergenic	49938	same_strand	upstream	no
0	XLOC_312469	TCONS_00313468	LOC106045285	rna35191	sense	intergenic	49938	same_strand	upstream	no
0	XLOC_312469	TCONS_00313468	LOC106045285	rna35192	sense	intergenic	49938	same_strand	upstream	no
0	XLOC_312469	TCONS_00313468	LOC106045285	rna35193	sense	intergenic	49938	same_strand	upstream	no
1	XLOC_156374	TCONS_00156881	CCBE1	rna17716	sense	genic	0	nested	intronic	no
1	XLOC_226071	TCONS_00226781	LOC106040276	rna25743	antisense	intergenic	38006	convergent	downstream	no
1	XLOC_039661	TCONS_00039794	LOC106029771	rna4488	sense	genic	0	nested	intronic	no
0	XLOC_039661	TCONS_00039794	LOC106029771	rna4489	sense	genic	0	nested	intronic	no
1	XLOC_012860	TCONS_00012899	SORCS2	rna1367	sense	genic	0	nested	intronic	no
0	XLOC_012860	TCONS_00012899	SORCS2	rna1368	sense	genic	0	nested	intronic	no
0	XLOC_012860	TCONS_00012899	SORCS2	rna1370	sense	genic	0	nested	intronic	no
0	XLOC_012860	TCONS_00012899	SORCS2	rna1374	sense	genic	0	nested	intronic	no
0	XLOC_012860	TCONS_00012899	SORCS2	rna1372	sense	genic	0	nested	intronic	no
0	XLOC_012860	TCONS_00012899	SORCS2	rna1369	sense	genic	0	nested	intronic	no
0	XLOC_012860	TCONS_00012899	SORCS2	rna1373	sense	genic	0	nested	intronic	no
0	XLOC_012860	TCONS_00012899	SORCS2	rna1371	sense	genic	0	nested	intronic	no
0	XLOC_012860	TCONS_00012899	SORCS2	rna1377	sense	genic	0	nested	intronic	no
0	XLOC_012860	TCONS_00012899	SORCS2	rna1375	sense	genic	0	nested	intronic	no
1	XLOC_064090	TCONS_00064282	LOC106031068	rna6702	antisense	intergenic	7954	convergent	downstream	no
1	XLOC_329261	TCONS_00330304	LOC106046504	rna37400	sense	genic	0	nested	intronic	no
1	XLOC_100451	TCONS_00100772	CSNK2A2	rna11161	antisense	intergenic	594	divergent	upstream	no
0	XLOC_100451	TCONS_00100772	CCDC113	rna11160	sense	intergenic	824	same_strand	upstream	no
1	XLOC_128075	TCONS_00128473	LOC106034941	rna14902	sense	genic	0	nested	intronic	no
0	XLOC_128075	TCONS_00128473	MPPE1	rna14901	sense	intergenic	9400	same_strand	upstream	no
1	XLOC_190571	TCONS_00191182	LOC106038373	rna21557	antisense	intergenic	28353	divergent	upstream	yes
1	XLOC_167807	TCONS_00168352	APAF1	rna18953	sense	intergenic	5290	same_strand	downstream	no
0	XLOC_167807	TCONS_00168352	ANKS1B	rna18956	antisense	intergenic	6145	convergent	downstream	no
0	XLOC_167807	TCONS_00168352	ANKS1B	rna18958	antisense	intergenic	6145	convergent	downstream	no
0	XLOC_167807	TCONS_00168352	ANKS1B	rna18957	antisense	intergenic	6145	convergent	downstream	no
1	XLOC_351167	TCONS_00352302	CNTFR	rna41015	sense	intergenic	56651	same_strand	upstream	no
0	XLOC_351167	TCONS_00352302	CNTFR	rna41016	sense	intergenic	58491	same_strand	upstream	no
1	XLOC_303726	TCONS_00304695	BCL6	rna34381	antisense	intergenic	13698	divergent	upstream	no
1	XLOC_135001	TCONS_00135419	PTDSS1	rna15516	antisense	intergenic	26840	convergent	downstream	no
0	XLOC_135001	TCONS_00135419	PTDSS1	rna15517	antisense	intergenic	26840	convergent	downstream	no
0	XLOC_135001	TCONS_00135419	PTDSS1	rna15515	antisense	intergenic	26840	convergent	downstream	no
1	XLOC_293925	TCONS_00294856	PPCDC	rna33312	sense	intergenic	1152	same_strand	downstream	no
0	XLOC_293925	TCONS_00294856	PPCDC	rna33309	sense	intergenic	1152	same_strand	downstream	no
0	XLOC_293925	TCONS_00294856	PPCDC	rna33308	sense	intergenic	1152	same_strand	downstream	no
0	XLOC_293925	TCONS_00294856	PPCDC	rna33310	sense	intergenic	1152	same_strand	downstream	no
0	XLOC_293925	TCONS_00294856	LOC106044193	rna33313	sense	intergenic	8783	same_strand	upstream	no
0	XLOC_293925	TCONS_00294856	PPCDC	rna33307	sense	intergenic	1152	same_strand	downstream	no
0	XLOC_293925	TCONS_00294856	PPCDC	rna33306	sense	intergenic	1152	same_strand	downstream	no
0	XLOC_293925	TCONS_00294856	PPCDC	rna33311	sense	intergenic	1152	same_strand	downstream	no
1	XLOC_201093	TCONS_00201727	TRNAA-AGC	rna22571	antisense	intergenic	13	convergent	downstream	no
0	XLOC_201093	TCONS_00201727	LOC106038811	rna22569	antisense	intergenic	1363	divergent	upstream	no
0	XLOC_201093	TCONS_00201727	LOC106038811	rna22570	antisense	intergenic	1364	divergent	upstream	no
1	XLOC_159151	TCONS_00159670	LOC106036453	rna17955	sense	genic	0	nested	intronic	no
0	XLOC_159151	TCONS_00159670	LOC106036454	rna17957	sense	intergenic	6913	same_strand	downstream	no
0	XLOC_159151	TCONS_00159670	LOC106036453	rna17954	sense	genic	0	nested	intronic	no
0	XLOC_159151	TCONS_00159670	PLEKHO2	rna17956	antisense	intergenic	1595	divergent	upstream	no
1	XLOC_269820	TCONS_00270682	BOD1	rna30491	sense	intergenic	2912	same_strand	upstream	no
1	XLOC_292458	TCONS_00293385	DDHD1	rna33027	sense	genic	0	nested	intronic	no
0	XLOC_292458	TCONS_00293385	DDHD1	rna33028	sense	intergenic	3515	same_strand	upstream	no
0	XLOC_292458	TCONS_00293385	DDHD1	rna33026	sense	genic	0	nested	intronic	no
0	XLOC_292458	TCONS_00293385	DDHD1	rna33029	sense	intergenic	3924	same_strand	upstream	no
1	XLOC_310924	TCONS_00311918	CHSY3	rna35130	sense	genic	0	nested	intronic	no
1	XLOC_174257	TCONS_00174817	ZBTB42	rna19513	sense	intergenic	5230	same_strand	downstream	no
1	XLOC_192096	TCONS_00192707	LOC106038356	rna21682	antisense	intergenic	2732	divergent	upstream	no
0	XLOC_192096	TCONS_00192707	LOC106038377	rna21680	antisense	intergenic	7630	convergent	downstream	no
0	XLOC_192096	TCONS_00192707	LOC106038356	rna21683	antisense	intergenic	2734	divergent	upstream	no
0	XLOC_192096	TCONS_00192707	LOC106038357	rna21684	antisense	intergenic	2763	divergent	upstream	no
0	XLOC_192096	TCONS_00192707	LOC106038377	rna21681	antisense	intergenic	7630	convergent	downstream	no
1	XLOC_090164	TCONS_00090444	ALDH8A1	rna9877	sense	intergenic	79144	same_strand	downstream	yes
1	XLOC_266482	TCONS_00267334	KIF5B	rna30295	sense	intergenic	14532	same_strand	upstream	no
1	XLOC_331549	TCONS_00332600	LOC106046694	rna37702	antisense	genic	0	nested	intronic	no
1	XLOC_159166	TCONS_00159685	IGDCC4	rna17990	sense	intergenic	1521	same_strand	upstream	no
1	XLOC_356831	TCONS_00358002	GMIP	rna42302	sense	genic	0	nested	intronic	no
0	XLOC_356831	TCONS_00358002	NXNL1	rna42303	sense	intergenic	9556	same_strand	downstream	no
1	XLOC_092421	TCONS_00092712	NT5DC1	rna9959	sense	genic	0	nested	intronic	no
0	XLOC_092421	TCONS_00092712	COL10A1	rna9962	antisense	intergenic	9573	divergent	upstream	no
0	XLOC_092421	TCONS_00092712	NT5DC1	rna9958	sense	genic	0	nested	intronic	no
1	XLOC_083700	TCONS_00083957	RNF216	rna9148	sense	genic	0	nested	intronic	no
0	XLOC_083700	TCONS_00083957	RNF216	rna9149	sense	genic	0	nested	intronic	no
1	XLOC_319433	TCONS_00320457	RPL37A	rna36363	sense	intergenic	3229	same_strand	downstream	no
1	XLOC_358490	TCONS_00359667	LOC106049952	rna42925	antisense	intergenic	8122	divergent	upstream	no
1	XLOC_331268	TCONS_00332318	GABARAPL2	rna37629	sense	genic	0	nested	intronic	no
0	XLOC_331268	TCONS_00332318	LOC106046634	rna37631	antisense	intergenic	7339	divergent	upstream	no
0	XLOC_331268	TCONS_00332318	LOC106046634	rna37633	antisense	intergenic	7400	divergent	upstream	no
0	XLOC_331268	TCONS_00332318	TMEM231	rna37630	antisense	intergenic	1576	divergent	upstream	no
0	XLOC_331268	TCONS_00332318	LOC106046634	rna37632	antisense	intergenic	7364	divergent	upstream	no
1	XLOC_000056	TCONS_00000056	LCOR	rna52	sense	genic	0	nested	intronic	no
0	XLOC_000056	TCONS_00000056	LOC106036520	rna51	sense	intergenic	6182	same_strand	downstream	no
1	XLOC_085549	TCONS_00085817	ZNF827	rna9346	sense	genic	0	nested	intronic	no
0	XLOC_085549	TCONS_00085817	ZNF827	rna9351	sense	genic	0	nested	intronic	no
0	XLOC_085549	TCONS_00085817	ZNF827	rna9347	sense	genic	0	nested	intronic	no
0	XLOC_085549	TCONS_00085817	ZNF827	rna9340	sense	genic	0	nested	intronic	no
0	XLOC_085549	TCONS_00085817	ZNF827	rna9352	sense	genic	0	nested	intronic	no
0	XLOC_085549	TCONS_00085817	ZNF827	rna9350	sense	genic	0	nested	intronic	no
0	XLOC_085549	TCONS_00085817	ZNF827	rna9343	sense	genic	0	nested	intronic	no
0	XLOC_085549	TCONS_00085817	ZNF827	rna9344	sense	genic	0	nested	intronic	no
0	XLOC_085549	TCONS_00085817	ZNF827	rna9349	sense	genic	0	nested	intronic	no
0	XLOC_085549	TCONS_00085817	ZNF827	rna9348	sense	genic	0	nested	intronic	no
0	XLOC_085549	TCONS_00085817	ZNF827	rna9339	sense	genic	0	nested	intronic	no
0	XLOC_085549	TCONS_00085817	ZNF827	rna9345	sense	genic	0	nested	intronic	no
0	XLOC_085549	TCONS_00085817	ZNF827	rna9341	sense	genic	0	nested	intronic	no
0	XLOC_085549	TCONS_00085817	ZNF827	rna9342	sense	genic	0	nested	intronic	no
1	XLOC_023322	TCONS_00023394	R3HDML	rna2641	antisense	intergenic	2994	convergent	downstream	no
0	XLOC_023322	TCONS_00023394	HNF4A	rna2640	antisense	intergenic	4564	divergent	upstream	no
0	XLOC_023322	TCONS_00023394	R3HDML	rna2642	antisense	intergenic	2994	convergent	downstream	no
1	XLOC_269820	TCONS_00270685	BOD1	rna30491	sense	intergenic	6298	same_strand	upstream	no
1	XLOC_254737	TCONS_00255548	LOC106042047	rna29163	sense	intergenic	64212	same_strand	downstream	no
1	XLOC_083589	TCONS_00083845	LOC106032057	rna9103	antisense	intergenic	15453	divergent	upstream	no
0	XLOC_083589	TCONS_00083845	LOC106032057	rna9102	antisense	intergenic	15453	divergent	upstream	no
1	XLOC_157170	TCONS_00157679	SUB1	rna17691	sense	intergenic	33085	same_strand	downstream	no
1	XLOC_033999	TCONS_00034104	AMIGO2	rna3900	antisense	intergenic	45962	divergent	upstream	no
0	XLOC_033999	TCONS_00034104	AMIGO2	rna3901	antisense	intergenic	49632	divergent	upstream	no
1	XLOC_335444	TCONS_00336516	SLC45A1	rna38723	sense	genic	0	nested	intronic	yes
1	XLOC_130533	TCONS_00130940	LOC106035109	rna15153	antisense	intergenic	60746	divergent	upstream	no
1	XLOC_017590	TCONS_00017653	LOC106037169	rna2333	sense	intergenic	1451	same_strand	downstream	no
1	XLOC_031116	TCONS_00031209	SLC38A2	rna3905	sense	intergenic	1713	same_strand	upstream	no
1	XLOC_041643	TCONS_00041782	SSFA2	rna5159	sense	genic	0	nested	intronic	no
1	XLOC_013534	TCONS_00013579	LOC106035333	rna1474	sense	intergenic	1165	same_strand	downstream	no
1	XLOC_243120	TCONS_00243900	FAM19A3	rna27679	sense	intergenic	9770	same_strand	downstream	no
0	XLOC_243120	TCONS_00243900	FAM19A3	rna27678	sense	intergenic	9770	same_strand	downstream	no
1	XLOC_067305	TCONS_00067506	DENND5B	rna6931	sense	intergenic	635	same_strand	downstream	no
0	XLOC_067305	TCONS_00067506	LOC106030963	rna6930	antisense	intergenic	8203	convergent	downstream	no
0	XLOC_067305	TCONS_00067506	LOC106030963	rna6929	antisense	intergenic	4979	convergent	downstream	no
1	XLOC_213529	TCONS_00214219	LOC106039506	rna24150	sense	intergenic	26985	same_strand	upstream	no
1	XLOC_337155	TCONS_00338239	LOC106047369	rna38978	sense	intergenic	33893	same_strand	upstream	no
1	XLOC_104202	TCONS_00104547	FAM189A1	rna12241	sense	genic	0	nested	intronic	no
0	XLOC_104202	TCONS_00104547	FAM189A1	rna12246	sense	genic	0	nested	intronic	no
0	XLOC_104202	TCONS_00104547	FAM189A1	rna12236	sense	genic	0	nested	intronic	no
0	XLOC_104202	TCONS_00104547	FAM189A1	rna12242	sense	genic	0	nested	intronic	no
0	XLOC_104202	TCONS_00104547	FAM189A1	rna12231	sense	genic	0	nested	intronic	no
0	XLOC_104202	TCONS_00104547	FAM189A1	rna12238	sense	genic	0	nested	intronic	no
0	XLOC_104202	TCONS_00104547	FAM189A1	rna12240	sense	genic	0	nested	intronic	no
0	XLOC_104202	TCONS_00104547	FAM189A1	rna12234	sense	genic	0	nested	intronic	no
0	XLOC_104202	TCONS_00104547	FAM189A1	rna12235	sense	genic	0	nested	intronic	no
0	XLOC_104202	TCONS_00104547	FAM189A1	rna12243	sense	genic	0	nested	intronic	no
0	XLOC_104202	TCONS_00104547	FAM189A1	rna12232	sense	genic	0	nested	intronic	no
0	XLOC_104202	TCONS_00104547	FAM189A1	rna12237	sense	genic	0	nested	intronic	no
0	XLOC_104202	TCONS_00104547	FAM189A1	rna12244	sense	genic	0	nested	intronic	no
0	XLOC_104202	TCONS_00104547	FAM189A1	rna12230	sense	genic	0	nested	intronic	no
0	XLOC_104202	TCONS_00104547	FAM189A1	rna12245	sense	genic	0	nested	intronic	no
0	XLOC_104202	TCONS_00104547	FAM189A1	rna12233	sense	genic	0	nested	intronic	no
0	XLOC_104202	TCONS_00104547	FAM189A1	rna12239	sense	genic	0	nested	intronic	no
1	XLOC_051633	TCONS_00051793	LOC106030485	rna6033	antisense	intergenic	8089	convergent	downstream	no
1	XLOC_174314	TCONS_00174874	TMEM179	rna19531	antisense	intergenic	18062	divergent	upstream	no
1	XLOC_281399	TCONS_00282297	PTPRT	rna31797	sense	intergenic	61696	same_strand	upstream	no
0	XLOC_281399	TCONS_00282297	PTPRT	rna31800	sense	intergenic	61696	same_strand	upstream	no
0	XLOC_281399	TCONS_00282297	PTPRT	rna31799	sense	intergenic	61696	same_strand	upstream	no
0	XLOC_281399	TCONS_00282297	PTPRT	rna31796	sense	intergenic	61696	same_strand	upstream	no
0	XLOC_281399	TCONS_00282297	PTPRT	rna31798	sense	intergenic	61696	same_strand	upstream	no
1	XLOC_297973	TCONS_00298917	ANXA1	rna33781	antisense	intergenic	15904	convergent	downstream	yes
1	XLOC_085212	TCONS_00085476	CPE	rna9622	sense	intergenic	1784	same_strand	downstream	yes
0	XLOC_085212	TCONS_00085476	CPE	rna9621	sense	intergenic	1785	same_strand	downstream	yes
0	XLOC_085212	TCONS_00085476	CPE	rna9624	sense	intergenic	1784	same_strand	downstream	yes
0	XLOC_085212	TCONS_00085476	CPE	rna9623	sense	intergenic	1784	same_strand	downstream	yes
1	XLOC_303987	TCONS_00304967	TFRC	rna34369	sense	intergenic	2044	same_strand	upstream	yes
0	XLOC_303987	TCONS_00304967	LOC106044800	rna34370	sense	intergenic	6374	same_strand	downstream	no
0	XLOC_303987	TCONS_00304967	SLC51A	rna34371	antisense	intergenic	8514	divergent	upstream	yes
1	XLOC_242389	TCONS_00243167	BMPR1B	rna27588	sense	intergenic	27759	same_strand	upstream	yes
0	XLOC_242389	TCONS_00243167	BMPR1B	rna27589	sense	intergenic	27759	same_strand	upstream	yes
1	XLOC_188100	TCONS_00188702	RP1L1	rna21217	sense	genic	0	nested	intronic	no
1	XLOC_254367	TCONS_00255178	ZNF277	rna29141	sense	intergenic	12596	same_strand	downstream	no
1	XLOC_030591	TCONS_00030684	MON2	rna3860	antisense	intergenic	9805	divergent	upstream	no
0	XLOC_030591	TCONS_00030684	MON2	rna3861	antisense	intergenic	9805	divergent	upstream	no
0	XLOC_030591	TCONS_00030684	MON2	rna3862	antisense	intergenic	9805	divergent	upstream	no
1	XLOC_316685	TCONS_00317690	BMPER	rna35570	sense	genic	0	nested	intronic	no
1	XLOC_147804	TCONS_00148277	SYN3	rna16702	antisense	genic	0	nested	intronic	no
0	XLOC_147804	TCONS_00148277	SYN3	rna16701	antisense	genic	0	nested	intronic	no
1	XLOC_246103	TCONS_00246889	SEC22B	rna28236	antisense	intergenic	7705	divergent	upstream	yes
1	XLOC_256647	TCONS_00257468	RPGR	rna29313	sense	intergenic	10079	same_strand	downstream	no
0	XLOC_256647	TCONS_00257468	SRPX	rna29314	sense	intergenic	17508	same_strand	upstream	no
1	XLOC_156829	TCONS_00157337	LOC106036323	rna17573	antisense	intergenic	4146	divergent	upstream	no
1	XLOC_302482	TCONS_00303449	SPRED2	rna34212	sense	genic	0	nested	intronic	no
0	XLOC_302482	TCONS_00303449	LOC106044679	rna34211	antisense	intergenic	5098	divergent	upstream	no
0	XLOC_302482	TCONS_00303449	SPRED2	rna34213	sense	intergenic	4618	same_strand	upstream	no
1	XLOC_204850	TCONS_00205512	LOC106038967	rna22945	sense	intergenic	13620	same_strand	downstream	no
1	XLOC_014291	TCONS_00014341	RBPJ	rna1630	antisense	genic	0	nested	intronic	yes
0	XLOC_014291	TCONS_00014341	RBPJ	rna1631	antisense	intergenic	5922	divergent	upstream	yes
1	XLOC_280977	TCONS_00281873	GRIK1	rna31787	sense	intergenic	19775	same_strand	downstream	no
1	XLOC_008167	TCONS_00008191	LOC106034519	rna1274	sense	intergenic	2891	same_strand	downstream	no
0	XLOC_008167	TCONS_00008191	TNIP2	rna1276	antisense	intergenic	5876	convergent	downstream	no
0	XLOC_008167	TCONS_00008191	LOC106034519	rna1275	sense	intergenic	5426	same_strand	downstream	no
0	XLOC_008167	TCONS_00008191	LOC106034519	rna1273	sense	intergenic	2891	same_strand	downstream	no
1	XLOC_192547	TCONS_00193162	LOC106038387	rna21817	antisense	intergenic	13811	divergent	upstream	no
1	XLOC_303954	TCONS_00304933	PSMD1	rna34352	sense	intergenic	1572	same_strand	downstream	no
0	XLOC_303954	TCONS_00304933	ARMC9	rna34350	sense	intergenic	5556	same_strand	upstream	no
0	XLOC_303954	TCONS_00304933	ARMC9	rna34349	sense	intergenic	5556	same_strand	upstream	no
0	XLOC_303954	TCONS_00304933	ARMC9	rna34351	sense	intergenic	5556	same_strand	upstream	no
1	XLOC_028158	TCONS_00028246	LRRC4C	rna3317	antisense	genic	0	nested	intronic	no
1	XLOC_354621	TCONS_00355785	NPAS2	rna41691	antisense	intergenic	48271	divergent	upstream	yes
1	XLOC_243291	TCONS_00244072	SRGAP2	rna27783	sense	genic	0	nested	intronic	no
0	XLOC_243291	TCONS_00244072	SRGAP2	rna27784	sense	genic	0	nested	intronic	no
1	XLOC_194453	TCONS_00195072	MTSS1	rna21904	sense	genic	0	nested	intronic	no
1	XLOC_190947	TCONS_00191558	KCNG2	rna21594	sense	intergenic	10438	same_strand	upstream	no
1	XLOC_104353	TCONS_00104698	LOC106033608	rna12311	antisense	genic	0	nested	intronic	no
0	XLOC_104353	TCONS_00104698	LOC106033608	rna12310	antisense	genic	0	nested	intronic	no
0	XLOC_104353	TCONS_00104698	LOC106033608	rna12309	antisense	genic	0	nested	intronic	no
1	XLOC_322102	TCONS_00323129	LEMD2	rna36719	sense	intergenic	1399	same_strand	downstream	no
0	XLOC_322102	TCONS_00323129	IP6K3	rna36717	sense	intergenic	3261	same_strand	upstream	no
0	XLOC_322102	TCONS_00323129	IP6K3	rna36718	sense	intergenic	4714	same_strand	upstream	no
1	XLOC_133942	TCONS_00134355	LOC106035251	rna15511	antisense	intergenic	23	divergent	upstream	no
0	XLOC_133942	TCONS_00134355	MTERF3	rna15514	antisense	intergenic	632	convergent	downstream	no
0	XLOC_133942	TCONS_00134355	LOC106035261	rna15510	sense	intergenic	9499	same_strand	downstream	no
0	XLOC_133942	TCONS_00134355	MTERF3	rna15512	antisense	intergenic	632	convergent	downstream	no
0	XLOC_133942	TCONS_00134355	MTERF3	rna15513	antisense	intergenic	632	convergent	downstream	no
1	XLOC_234826	TCONS_00235570	GALNT18	rna26865	sense	genic	0	nested	intronic	no
0	XLOC_234826	TCONS_00235570	USP47	rna26864	antisense	intergenic	8183	divergent	upstream	no
0	XLOC_234826	TCONS_00235570	USP47	rna26861	antisense	intergenic	2121	divergent	upstream	no
0	XLOC_234826	TCONS_00235570	USP47	rna26862	antisense	intergenic	2121	divergent	upstream	no
0	XLOC_234826	TCONS_00235570	USP47	rna26863	antisense	intergenic	2121	divergent	upstream	no
1	XLOC_175568	TCONS_00176129	SKOR2	rna19650	antisense	intergenic	56676	divergent	upstream	no
1	XLOC_341819	TCONS_00342921	WASL	rna39421	antisense	intergenic	5553	divergent	upstream	no
1	XLOC_070039	TCONS_00070245	NCOR2	rna7348	sense	genic	0	nested	intronic	no
1	XLOC_254106	TCONS_00254916	LOC106042009	rna29122	sense	intergenic	6526	same_strand	upstream	no
1	XLOC_288479	TCONS_00289396	MPDZ	rna32562	antisense	intergenic	1766	divergent	upstream	no
1	XLOC_055255	TCONS_00055421	MRPS28	rna6195	sense	genic	0	nested	intronic	no
0	XLOC_055255	TCONS_00055421	TPD52	rna6188	sense	intergenic	3193	same_strand	downstream	no
0	XLOC_055255	TCONS_00055421	MRPS28	rna6196	sense	genic	0	nested	intronic	no
0	XLOC_055255	TCONS_00055421	TPD52	rna6194	sense	intergenic	3193	same_strand	downstream	no
0	XLOC_055255	TCONS_00055421	TPD52	rna6190	sense	intergenic	3193	same_strand	downstream	no
0	XLOC_055255	TCONS_00055421	TPD52	rna6191	sense	intergenic	3193	same_strand	downstream	no
0	XLOC_055255	TCONS_00055421	TPD52	rna6193	sense	intergenic	3193	same_strand	downstream	no
0	XLOC_055255	TCONS_00055421	TPD52	rna6189	sense	intergenic	3193	same_strand	downstream	no
0	XLOC_055255	TCONS_00055421	TPD52	rna6192	sense	intergenic	3193	same_strand	downstream	no
1	XLOC_026759	TCONS_00026840	LOC106041762	rna2776	sense	intergenic	1965	same_strand	downstream	no
1	XLOC_098383	TCONS_00098699	ZFYVE9	rna10837	sense	genic	0	nested	intronic	no
0	XLOC_098383	TCONS_00098699	ZFYVE9	rna10836	sense	genic	0	nested	intronic	no
1	XLOC_030967	TCONS_00031060	LOC106045684	rna3895	sense	genic	0	nested	intronic	no
1	XLOC_343300	TCONS_00344406	CBFA2T2	rna39631	sense	intergenic	14377	same_strand	upstream	no
1	XLOC_227144	TCONS_00227856	ZC3H12C	rna25910	sense	genic	0	nested	intronic	no
0	XLOC_227144	TCONS_00227856	ZC3H12C	rna25915	sense	genic	0	nested	intronic	no
0	XLOC_227144	TCONS_00227856	ZC3H12C	rna25907	sense	genic	0	nested	intronic	no
0	XLOC_227144	TCONS_00227856	ZC3H12C	rna25905	sense	genic	0	nested	intronic	no
0	XLOC_227144	TCONS_00227856	ZC3H12C	rna25919	sense	genic	0	nested	intronic	no
0	XLOC_227144	TCONS_00227856	ZC3H12C	rna25908	sense	genic	0	nested	intronic	no
0	XLOC_227144	TCONS_00227856	ZC3H12C	rna25911	sense	genic	0	nested	intronic	no
0	XLOC_227144	TCONS_00227856	ZC3H12C	rna25909	sense	genic	0	nested	intronic	no
0	XLOC_227144	TCONS_00227856	ZC3H12C	rna25917	sense	genic	0	nested	intronic	no
0	XLOC_227144	TCONS_00227856	ZC3H12C	rna25916	sense	genic	0	nested	intronic	no
0	XLOC_227144	TCONS_00227856	ZC3H12C	rna25914	sense	genic	0	nested	intronic	no
0	XLOC_227144	TCONS_00227856	ZC3H12C	rna25918	sense	genic	0	nested	intronic	no
0	XLOC_227144	TCONS_00227856	ZC3H12C	rna25913	sense	genic	0	nested	intronic	no
0	XLOC_227144	TCONS_00227856	ZC3H12C	rna25906	sense	genic	0	nested	intronic	no
0	XLOC_227144	TCONS_00227856	ZC3H12C	rna25912	sense	genic	0	nested	intronic	no
0	XLOC_227144	TCONS_00227856	ZC3H12C	rna25904	sense	genic	0	nested	intronic	no
1	XLOC_180917	TCONS_00181509	MIB1	rna20089	sense	intergenic	5964	same_strand	upstream	no
0	XLOC_180917	TCONS_00181509	MIB1	rna20091	sense	intergenic	6226	same_strand	upstream	no
0	XLOC_180917	TCONS_00181509	MIB1	rna20088	sense	intergenic	5964	same_strand	upstream	no
0	XLOC_180917	TCONS_00181509	MIB1	rna20090	sense	intergenic	5964	same_strand	upstream	no
1	XLOC_239026	TCONS_00239795	LOC106041042	rna27213	antisense	intergenic	1467	divergent	upstream	no
0	XLOC_239026	TCONS_00239795	LOC106041041	rna27212	sense	intergenic	4058	same_strand	upstream	no
1	XLOC_060451	TCONS_00060629	DDX1	rna6483	sense	intergenic	24976	same_strand	downstream	no
1	XLOC_082926	TCONS_00083181	PLD1	rna8930	sense	intergenic	20038	same_strand	upstream	no
1	XLOC_155050	TCONS_00155553	LOC106036257	rna17450	sense	intergenic	2739	same_strand	upstream	no
0	XLOC_155050	TCONS_00155553	LOC106036254	rna17451	antisense	intergenic	9007	divergent	upstream	no
0	XLOC_155050	TCONS_00155553	LOC106036256	rna17449	antisense	intergenic	5873	convergent	downstream	no
1	XLOC_155216	TCONS_00155720	ACSL3	rna17499	sense	genic	0	nested	intronic	no
0	XLOC_155216	TCONS_00155720	ACSL3	rna17501	sense	genic	0	nested	intronic	no
0	XLOC_155216	TCONS_00155720	ACSL3	rna17500	sense	genic	0	nested	intronic	no
1	XLOC_154190	TCONS_00154690	SERPINE2	rna17484	sense	intergenic	977	same_strand	downstream	no
0	XLOC_154190	TCONS_00154690	WDFY1	rna17485	sense	intergenic	1450	same_strand	upstream	no
0	XLOC_154190	TCONS_00154690	SERPINE2	rna17482	sense	intergenic	977	same_strand	downstream	no
0	XLOC_154190	TCONS_00154690	SERPINE2	rna17483	sense	intergenic	977	same_strand	downstream	no
0	XLOC_154190	TCONS_00154690	WDFY1	rna17487	sense	intergenic	8256	same_strand	upstream	no
0	XLOC_154190	TCONS_00154690	SERPINE2	rna17481	sense	intergenic	977	same_strand	downstream	no
0	XLOC_154190	TCONS_00154690	WDFY1	rna17486	sense	intergenic	5640	same_strand	upstream	no
1	XLOC_097496	TCONS_00097802	TRABD2B	rna10902	sense	genic	0	nested	intronic	no
1	XLOC_102529	TCONS_00102858	CHST12	rna11949	sense	intergenic	1413	same_strand	downstream	no
0	XLOC_102529	TCONS_00102858	CHST12	rna11948	sense	intergenic	6824	same_strand	downstream	no
0	XLOC_102529	TCONS_00102858	CHST12	rna11950	sense	intergenic	1413	same_strand	downstream	no
0	XLOC_102529	TCONS_00102858	CHST12	rna11947	sense	intergenic	1413	same_strand	downstream	no
0	XLOC_102529	TCONS_00102858	CHST12	rna11951	sense	intergenic	1413	same_strand	downstream	no
1	XLOC_135414	TCONS_00135837	ZFPM2	rna15622	antisense	intergenic	72494	divergent	upstream	yes
1	XLOC_095725	TCONS_00096025	SMAD5	rna10373	antisense	intergenic	9404	convergent	downstream	no
0	XLOC_095725	TCONS_00096025	SMAD5	rna10375	antisense	intergenic	9404	convergent	downstream	no
0	XLOC_095725	TCONS_00096025	SMAD5	rna10374	antisense	intergenic	9404	convergent	downstream	no
0	XLOC_095725	TCONS_00096025	SMAD5	rna10372	antisense	intergenic	9404	convergent	downstream	no
1	XLOC_048381	TCONS_00048532	NR1D2	rna5602	antisense	intergenic	3351	divergent	upstream	no
0	XLOC_048381	TCONS_00048532	RPL15	rna5601	antisense	intergenic	5762	convergent	downstream	no
1	XLOC_322156	TCONS_00323183	LOC106046186	rna36795	sense	intergenic	7113	same_strand	downstream	no
0	XLOC_322156	TCONS_00323183	LOC106046183	rna36794	sense	intergenic	7613	same_strand	upstream	no
1	XLOC_353728	TCONS_00354874	KANSL3	rna41450	sense	genic	0	nested	intronic	no
0	XLOC_353728	TCONS_00354874	ARID5A	rna41449	antisense	intergenic	6870	convergent	downstream	no
1	XLOC_343665	TCONS_00344773	GLUL	rna39697	sense	intergenic	11014	same_strand	downstream	no
0	XLOC_343665	TCONS_00344773	ZNF648	rna39698	antisense	intergenic	13103	convergent	downstream	no
1	XLOC_273042	TCONS_00273916	LOC106042974	rna30833	sense	intergenic	2775	same_strand	downstream	no
1	XLOC_186066	TCONS_00186665	SAT1	rna20664	antisense	intergenic	1149	convergent	downstream	no
0	XLOC_186066	TCONS_00186665	APOO	rna20668	sense	intergenic	8706	same_strand	downstream	no
0	XLOC_186066	TCONS_00186665	ACOT9	rna20663	sense	intergenic	9034	same_strand	upstream	no
0	XLOC_186066	TCONS_00186665	APOO	rna20665	sense	intergenic	8706	same_strand	downstream	no
0	XLOC_186066	TCONS_00186665	APOO	rna20667	sense	intergenic	8706	same_strand	downstream	no
0	XLOC_186066	TCONS_00186665	APOO	rna20666	sense	intergenic	8706	same_strand	downstream	no
0	XLOC_186066	TCONS_00186665	APOO	rna20669	sense	intergenic	8706	same_strand	downstream	no
1	XLOC_076539	TCONS_00076765	LOC106031663	rna8219	antisense	intergenic	935	convergent	downstream	no
0	XLOC_076539	TCONS_00076765	ZFP36L1	rna8221	antisense	intergenic	4251	divergent	upstream	no
0	XLOC_076539	TCONS_00076765	LOC106031665	rna8222	sense	intergenic	7514	same_strand	downstream	no
0	XLOC_076539	TCONS_00076765	LOC106031665	rna8223	sense	intergenic	7514	same_strand	downstream	no
0	XLOC_076539	TCONS_00076765	LOC106031663	rna8220	antisense	intergenic	935	convergent	downstream	no
1	XLOC_207019	TCONS_00207690	LOC106039017	rna23029	sense	intergenic	5615	same_strand	downstream	no
1	XLOC_225116	TCONS_00225823	SPSB4	rna25654	sense	genic	0	nested	intronic	no
0	XLOC_225116	TCONS_00225823	SPSB4	rna25653	sense	genic	0	nested	intronic	no
0	XLOC_225116	TCONS_00225823	SPSB4	rna25652	sense	genic	0	nested	intronic	no
1	XLOC_269851	TCONS_00270718	LOC106042779	rna30495	antisense	genic	0	nested	intronic	no
1	XLOC_257069	TCONS_00257892	TSPAN7	rna29310	sense	intergenic	26731	same_strand	downstream	no
0	XLOC_257069	TCONS_00257892	TSPAN7	rna29309	sense	intergenic	26731	same_strand	downstream	no
1	XLOC_311239	TCONS_00312235	LOC106045241	rna35133	antisense	intergenic	63511	divergent	upstream	no
0	XLOC_311239	TCONS_00312235	LOC106045240	rna35132	antisense	intergenic	67690	convergent	downstream	no
1	XLOC_185183	TCONS_00185781	LOC106037805	rna20731	sense	intergenic	16359	same_strand	downstream	no
1	XLOC_037616	TCONS_00037735	SIPA1L2	rna4055	sense	intergenic	2842	same_strand	upstream	no
0	XLOC_037616	TCONS_00037735	SIPA1L2	rna4057	sense	intergenic	2843	same_strand	upstream	no
0	XLOC_037616	TCONS_00037735	SIPA1L2	rna4058	sense	intergenic	2843	same_strand	upstream	no
0	XLOC_037616	TCONS_00037735	SIPA1L2	rna4056	sense	intergenic	2843	same_strand	upstream	no
1	XLOC_177632	TCONS_00178203	LOC106037389	rna19884	antisense	intergenic	485	convergent	downstream	no
1	XLOC_079037	TCONS_00079269	OBFC1	rna8657	antisense	intergenic	954	divergent	upstream	no
0	XLOC_079037	TCONS_00079269	SLK	rna8662	sense	intergenic	5027	same_strand	upstream	no
1	XLOC_332491	TCONS_00333547	PTH1R	rna37982	antisense	genic	0	nested	intronic	no
0	XLOC_332491	TCONS_00333547	PTH1R	rna37983	antisense	genic	0	nested	intronic	no
1	XLOC_065549	TCONS_00065745	MTPN	rna6975	antisense	intergenic	15497	divergent	upstream	yes
1	XLOC_194855	TCONS_00195476	LOC106038461	rna21990	antisense	intergenic	12479	divergent	upstream	no
1	XLOC_329597	TCONS_00330642	PGGT1B	rna37445	sense	intergenic	4866	same_strand	downstream	no
0	XLOC_329597	TCONS_00330642	TRIM36	rna37448	sense	intergenic	8716	same_strand	upstream	no
0	XLOC_329597	TCONS_00330642	TRIM36	rna37446	sense	intergenic	8410	same_strand	upstream	no
0	XLOC_329597	TCONS_00330642	TRIM36	rna37447	sense	intergenic	8410	same_strand	upstream	no
1	XLOC_012697	TCONS_00012735	TRMT44	rna1334	sense	intergenic	10285	same_strand	downstream	no
1	XLOC_199084	TCONS_00199715	ELOVL6	rna22331	antisense	genic	0	nested	intronic	no
1	XLOC_348325	TCONS_00349452	MYRF	rna40507	sense	genic	0	nested	intronic	no
1	XLOC_197103	TCONS_00197731	GAB3	rna22126	sense	intergenic	11858	same_strand	upstream	no
0	XLOC_197103	TCONS_00197731	SMARCA1	rna22127	antisense	intergenic	12351	divergent	upstream	no
1	XLOC_192096	TCONS_00192709	LOC106038356	rna21682	antisense	intergenic	1847	divergent	upstream	no
0	XLOC_192096	TCONS_00192709	LOC106038377	rna21680	antisense	intergenic	7630	convergent	downstream	no
0	XLOC_192096	TCONS_00192709	LOC106038356	rna21683	antisense	intergenic	1849	divergent	upstream	no
0	XLOC_192096	TCONS_00192709	LOC106038357	rna21684	antisense	intergenic	1878	divergent	upstream	no
0	XLOC_192096	TCONS_00192709	LOC106038377	rna21681	antisense	intergenic	7630	convergent	downstream	no
1	XLOC_155915	TCONS_00156421	LIFR	rna17585	sense	intergenic	24906	same_strand	upstream	no
1	XLOC_116007	TCONS_00116376	MRAS	rna13410	sense	intergenic	2185	same_strand	downstream	no
0	XLOC_116007	TCONS_00116376	MRAS	rna13412	sense	intergenic	2185	same_strand	downstream	no
0	XLOC_116007	TCONS_00116376	MRAS	rna13411	sense	intergenic	2185	same_strand	downstream	no
0	XLOC_116007	TCONS_00116376	MRAS	rna13407	sense	intergenic	2185	same_strand	downstream	no
0	XLOC_116007	TCONS_00116376	MRAS	rna13409	sense	intergenic	2185	same_strand	downstream	no
0	XLOC_116007	TCONS_00116376	MRAS	rna13413	sense	intergenic	2185	same_strand	downstream	no
0	XLOC_116007	TCONS_00116376	MRAS	rna13408	sense	intergenic	2185	same_strand	downstream	no
1	XLOC_291250	TCONS_00292177	LOC106043975	rna32904	sense	genic	0	nested	intronic	no
1	XLOC_179784	TCONS_00180376	MEOX2	rna19967	antisense	intergenic	1362	divergent	upstream	no
1	XLOC_290332	TCONS_00291258	EDNRB	rna32738	sense	intergenic	946	same_strand	upstream	no
1	XLOC_063994	TCONS_00064186	ETV6	rna6673	sense	genic	0	nested	intronic	yes
0	XLOC_063994	TCONS_00064186	ETV6	rna6675	sense	genic	0	nested	intronic	yes
0	XLOC_063994	TCONS_00064186	ETV6	rna6676	sense	genic	0	nested	intronic	yes
0	XLOC_063994	TCONS_00064186	ETV6	rna6677	sense	genic	0	nested	intronic	yes
0	XLOC_063994	TCONS_00064186	ETV6	rna6678	sense	genic	0	nested	intronic	yes
0	XLOC_063994	TCONS_00064186	ETV6	rna6674	sense	genic	0	nested	intronic	yes
1	XLOC_041179	TCONS_00041315	LOC106030007	rna5037	antisense	intergenic	4669	divergent	upstream	no
0	XLOC_041179	TCONS_00041315	LOC106030007	rna5038	antisense	intergenic	9472	divergent	upstream	no
0	XLOC_041179	TCONS_00041315	OLA1	rna5039	antisense	intergenic	5375	convergent	downstream	no
1	XLOC_041594	TCONS_00041731	ITGA4	rna5148	sense	intergenic	45731	same_strand	upstream	no
1	XLOC_343753	TCONS_00344862	ZNF648	rna39698	sense	intergenic	2726	same_strand	downstream	no
1	XLOC_323095	TCONS_00324123	CSNK1G3	rna36889	sense	intergenic	4267	same_strand	downstream	no
0	XLOC_323095	TCONS_00324123	CSNK1G3	rna36879	sense	intergenic	4267	same_strand	downstream	no
0	XLOC_323095	TCONS_00324123	CSNK1G3	rna36888	sense	intergenic	4267	same_strand	downstream	no
0	XLOC_323095	TCONS_00324123	CSNK1G3	rna36876	sense	intergenic	4267	same_strand	downstream	no
0	XLOC_323095	TCONS_00324123	CSNK1G3	rna36885	sense	intergenic	4267	same_strand	downstream	no
0	XLOC_323095	TCONS_00324123	CSNK1G3	rna36877	sense	intergenic	4267	same_strand	downstream	no
0	XLOC_323095	TCONS_00324123	CSNK1G3	rna36878	sense	intergenic	4267	same_strand	downstream	no
0	XLOC_323095	TCONS_00324123	CSNK1G3	rna36890	sense	intergenic	4267	same_strand	downstream	no
0	XLOC_323095	TCONS_00324123	CSNK1G3	rna36881	sense	intergenic	4267	same_strand	downstream	no
0	XLOC_323095	TCONS_00324123	CSNK1G3	rna36882	sense	intergenic	4267	same_strand	downstream	no
0	XLOC_323095	TCONS_00324123	CSNK1G3	rna36884	sense	intergenic	4267	same_strand	downstream	no
0	XLOC_323095	TCONS_00324123	CSNK1G3	rna36883	sense	intergenic	4267	same_strand	downstream	no
0	XLOC_323095	TCONS_00324123	CSNK1G3	rna36886	sense	intergenic	4267	same_strand	downstream	no
0	XLOC_323095	TCONS_00324123	CSNK1G3	rna36887	sense	intergenic	4267	same_strand	downstream	no
0	XLOC_323095	TCONS_00324123	CSNK1G3	rna36880	sense	intergenic	4267	same_strand	downstream	no
1	XLOC_186612	TCONS_00187213	FLNB	rna21059	sense	intergenic	7677	same_strand	upstream	yes
0	XLOC_186612	TCONS_00187213	FLNB	rna21058	sense	intergenic	7677	same_strand	upstream	yes
0	XLOC_186612	TCONS_00187213	FLNB	rna21057	sense	intergenic	7677	same_strand	upstream	yes
1	XLOC_309906	TCONS_00310894	KIAA1328	rna34995	sense	genic	0	nested	intronic	no
0	XLOC_309906	TCONS_00310894	KIAA1328	rna34994	sense	genic	0	nested	intronic	no
0	XLOC_309906	TCONS_00310894	KIAA1328	rna34993	sense	genic	0	nested	intronic	no
1	XLOC_346726	TCONS_00347846	LOC106048154	rna40309	sense	genic	0	nested	intronic	no
1	XLOC_262290	TCONS_00263122	FBXL17	rna29679	antisense	intergenic	933	convergent	downstream	no
1	XLOC_238757	TCONS_00239520	AUTS2	rna27274	antisense	genic	0	nested	intronic	no
1	XLOC_047600	TCONS_00047748	LOC106030159	rna5494	antisense	intergenic	8957	divergent	upstream	no
1	XLOC_263351	TCONS_00264191	ANXA5	rna29886	sense	intergenic	7189	same_strand	downstream	no
0	XLOC_263351	TCONS_00264191	ANXA5	rna29887	sense	intergenic	8768	same_strand	downstream	no
0	XLOC_263351	TCONS_00264191	ANXA5	rna29889	sense	intergenic	7189	same_strand	downstream	no
0	XLOC_263351	TCONS_00264191	ANXA5	rna29888	sense	intergenic	7189	same_strand	downstream	no
1	XLOC_058586	TCONS_00058761	LOC106030665	rna6281	antisense	intergenic	5216	divergent	upstream	no
0	XLOC_058586	TCONS_00058761	LOC106030665	rna6280	antisense	intergenic	5216	divergent	upstream	no
1	XLOC_133948	TCONS_00134361	PTDSS1	rna15516	sense	intergenic	17046	same_strand	downstream	no
0	XLOC_133948	TCONS_00134361	PTDSS1	rna15517	sense	intergenic	17046	same_strand	downstream	no
0	XLOC_133948	TCONS_00134361	PTDSS1	rna15515	sense	intergenic	17046	same_strand	downstream	no
1	XLOC_117536	TCONS_00117905	LOC106034424	rna13734	sense	intergenic	27682	same_strand	downstream	no
0	XLOC_117536	TCONS_00117905	LOC106034424	rna13733	sense	intergenic	27682	same_strand	downstream	no
1	XLOC_321507	TCONS_00322534	KCTD5	rna36604	antisense	genic	0	nested	intronic	no
0	XLOC_321507	TCONS_00322534	KCTD5	rna36606	antisense	genic	0	nested	intronic	no
0	XLOC_321507	TCONS_00322534	KCTD5	rna36600	antisense	genic	0	nested	intronic	no
0	XLOC_321507	TCONS_00322534	LOC106046029	rna36607	sense	intergenic	7203	same_strand	downstream	no
0	XLOC_321507	TCONS_00322534	KCTD5	rna36605	antisense	genic	0	nested	intronic	no
0	XLOC_321507	TCONS_00322534	KCTD5	rna36599	antisense	genic	0	nested	intronic	no
0	XLOC_321507	TCONS_00322534	KCTD5	rna36602	antisense	genic	0	nested	intronic	no
0	XLOC_321507	TCONS_00322534	KCTD5	rna36603	antisense	genic	0	nested	intronic	no
0	XLOC_321507	TCONS_00322534	KCTD5	rna36601	antisense	genic	0	nested	intronic	no
1	XLOC_294128	TCONS_00295060	ARID3B	rna33288	antisense	genic	0	nested	intronic	no
0	XLOC_294128	TCONS_00295060	ARID3B	rna33287	antisense	genic	0	nested	intronic	no
1	XLOC_079719	TCONS_00079961	LOC106031951	rna8799	sense	intergenic	3282	same_strand	upstream	no
0	XLOC_079719	TCONS_00079961	TRUB1	rna8798	sense	intergenic	6840	same_strand	downstream	no
1	XLOC_358791	TCONS_00359971	LOC106029495	rna43154	sense	intergenic	2824	same_strand	upstream	no
0	XLOC_358791	TCONS_00359971	LOC106029494	rna43155	sense	intergenic	9339	same_strand	upstream	no
1	XLOC_319178	TCONS_00320199	BIN1	rna36391	sense	genic	0	nested	intronic	no
0	XLOC_319178	TCONS_00320199	BIN1	rna36389	sense	genic	0	nested	intronic	no
0	XLOC_319178	TCONS_00320199	BIN1	rna36393	sense	genic	0	nested	intronic	no
0	XLOC_319178	TCONS_00320199	BIN1	rna36392	sense	genic	0	nested	intronic	no
0	XLOC_319178	TCONS_00320199	BIN1	rna36390	sense	genic	0	nested	intronic	no
0	XLOC_319178	TCONS_00320199	BIN1	rna36387	sense	genic	0	nested	intronic	no
0	XLOC_319178	TCONS_00320199	BIN1	rna36388	sense	genic	0	nested	intronic	no
1	XLOC_138917	TCONS_00139352	CADPS	rna15934	antisense	genic	0	nested	intronic	no
0	XLOC_138917	TCONS_00139352	CADPS	rna15933	antisense	genic	0	nested	intronic	no
0	XLOC_138917	TCONS_00139352	CADPS	rna15935	antisense	genic	0	nested	intronic	no
1	XLOC_051633	TCONS_00051795	LOC106030485	rna6033	antisense	intergenic	8089	convergent	downstream	no
1	XLOC_166955	TCONS_00167499	LOC106036792	rna18801	sense	intergenic	4867	same_strand	upstream	yes
1	XLOC_079651	TCONS_00079892	HABP2	rna8746	sense	intergenic	13886	same_strand	upstream	no
0	XLOC_079651	TCONS_00079892	HABP2	rna8747	sense	intergenic	13886	same_strand	upstream	no
1	XLOC_335139	TCONS_00336210	GAS7	rna38642	sense	genic	0	nested	intronic	no
1	XLOC_121516	TCONS_00121898	ERN1	rna14234	sense	genic	0	nested	intronic	no
1	XLOC_143289	TCONS_00143742	LOC106035612	rna16256	sense	intergenic	3694	same_strand	downstream	no
0	XLOC_143289	TCONS_00143742	LOC106035612	rna16258	sense	intergenic	5235	same_strand	downstream	no
0	XLOC_143289	TCONS_00143742	LOC106035612	rna16257	sense	intergenic	5235	same_strand	downstream	no
1	XLOC_353746	TCONS_00354892	AHCYL2	rna41477	sense	intergenic	23849	same_strand	upstream	yes
0	XLOC_353746	TCONS_00354892	SMO	rna41476	sense	intergenic	23907	same_strand	downstream	no
1	XLOC_028748	TCONS_00028838	PPFIA1	rna3414	sense	intergenic	7214	same_strand	upstream	no
0	XLOC_028748	TCONS_00028838	FADD	rna3419	sense	intergenic	7227	same_strand	downstream	no
0	XLOC_028748	TCONS_00028838	PPFIA1	rna3415	sense	intergenic	7214	same_strand	upstream	no
0	XLOC_028748	TCONS_00028838	PPFIA1	rna3416	sense	intergenic	7214	same_strand	upstream	no
0	XLOC_028748	TCONS_00028838	PPFIA1	rna3418	sense	intergenic	7214	same_strand	upstream	no
0	XLOC_028748	TCONS_00028838	PPFIA1	rna3417	sense	intergenic	7214	same_strand	upstream	no
1	XLOC_140108	TCONS_00140548	MAGI1	rna15970	sense	genic	0	nested	intronic	no
0	XLOC_140108	TCONS_00140548	MAGI1	rna15971	sense	genic	0	nested	intronic	no
0	XLOC_140108	TCONS_00140548	MAGI1	rna15963	sense	genic	0	nested	intronic	no
0	XLOC_140108	TCONS_00140548	MAGI1	rna15969	sense	genic	0	nested	intronic	no
0	XLOC_140108	TCONS_00140548	MAGI1	rna15964	sense	genic	0	nested	intronic	no
0	XLOC_140108	TCONS_00140548	MAGI1	rna15972	sense	genic	0	nested	intronic	no
0	XLOC_140108	TCONS_00140548	MAGI1	rna15967	sense	genic	0	nested	intronic	no
0	XLOC_140108	TCONS_00140548	MAGI1	rna15966	sense	genic	0	nested	intronic	no
0	XLOC_140108	TCONS_00140548	MAGI1	rna15968	sense	genic	0	nested	intronic	no
0	XLOC_140108	TCONS_00140548	MAGI1	rna15973	sense	genic	0	nested	intronic	no
0	XLOC_140108	TCONS_00140548	MAGI1	rna15962	sense	genic	0	nested	intronic	no
0	XLOC_140108	TCONS_00140548	MAGI1	rna15965	sense	genic	0	nested	intronic	no
1	XLOC_119331	TCONS_00119708	LOC106034552	rna13870	sense	genic	0	nested	intronic	no
0	XLOC_119331	TCONS_00119708	LOC106034551	rna13871	sense	intergenic	5985	same_strand	upstream	no
0	XLOC_119331	TCONS_00119708	LOC106034551	rna13873	sense	intergenic	5985	same_strand	upstream	no
0	XLOC_119331	TCONS_00119708	LOC106034551	rna13874	sense	intergenic	5985	same_strand	upstream	no
0	XLOC_119331	TCONS_00119708	LOC106034551	rna13872	sense	intergenic	5985	same_strand	upstream	no
0	XLOC_119331	TCONS_00119708	LOC106034551	rna13875	sense	intergenic	5985	same_strand	upstream	no
1	XLOC_170929	TCONS_00171479	MRPL39	rna19034	sense	intergenic	1632	same_strand	downstream	no
1	XLOC_355883	TCONS_00357053	LOC106049266	rna41948	sense	intergenic	115	same_strand	downstream	no
0	XLOC_355883	TCONS_00357053	GABPB2	rna41951	antisense	intergenic	5779	convergent	downstream	no
0	XLOC_355883	TCONS_00357053	GABPB2	rna41950	antisense	intergenic	5779	convergent	downstream	no
0	XLOC_355883	TCONS_00357053	GABPB2	rna41949	antisense	intergenic	5779	convergent	downstream	no
0	XLOC_355883	TCONS_00357053	LOC106049265	rna41947	antisense	intergenic	9870	divergent	upstream	no
1	XLOC_243736	TCONS_00244519	RFC2	rna28115	antisense	intergenic	34591	divergent	upstream	no
1	XLOC_338591	TCONS_00339683	LOC106047414	rna39027	sense	genic	0	nested	intronic	no
0	XLOC_338591	TCONS_00339683	LOC106047414	rna39026	sense	genic	0	nested	intronic	no
0	XLOC_338591	TCONS_00339683	LOC106047414	rna39028	sense	intergenic	8084	same_strand	downstream	no
1	XLOC_323917	TCONS_00324945	LRRTM4	rna36972	antisense	genic	0	nested	intronic	no
0	XLOC_323917	TCONS_00324945	LRRTM4	rna36963	antisense	genic	0	nested	intronic	no
0	XLOC_323917	TCONS_00324945	LRRTM4	rna36953	antisense	genic	0	nested	intronic	no
0	XLOC_323917	TCONS_00324945	LRRTM4	rna36956	antisense	genic	0	nested	intronic	no
0	XLOC_323917	TCONS_00324945	LRRTM4	rna36957	antisense	genic	0	nested	intronic	no
0	XLOC_323917	TCONS_00324945	LRRTM4	rna36954	antisense	genic	0	nested	intronic	no
0	XLOC_323917	TCONS_00324945	LRRTM4	rna36952	antisense	genic	0	nested	intronic	no
0	XLOC_323917	TCONS_00324945	LRRTM4	rna36964	antisense	genic	0	nested	intronic	no
0	XLOC_323917	TCONS_00324945	LRRTM4	rna36961	antisense	genic	0	nested	intronic	no
0	XLOC_323917	TCONS_00324945	LRRTM4	rna36970	antisense	genic	0	nested	intronic	no
0	XLOC_323917	TCONS_00324945	LRRTM4	rna36967	antisense	genic	0	nested	intronic	no
0	XLOC_323917	TCONS_00324945	LRRTM4	rna36975	antisense	genic	0	nested	intronic	no
0	XLOC_323917	TCONS_00324945	LRRTM4	rna36973	antisense	genic	0	nested	intronic	no
0	XLOC_323917	TCONS_00324945	LRRTM4	rna36962	antisense	genic	0	nested	intronic	no
0	XLOC_323917	TCONS_00324945	LRRTM4	rna36955	antisense	genic	0	nested	intronic	no
0	XLOC_323917	TCONS_00324945	LRRTM4	rna36968	antisense	genic	0	nested	intronic	no
0	XLOC_323917	TCONS_00324945	LRRTM4	rna36960	antisense	genic	0	nested	intronic	no
0	XLOC_323917	TCONS_00324945	LRRTM4	rna36971	antisense	genic	0	nested	intronic	no
0	XLOC_323917	TCONS_00324945	LRRTM4	rna36965	antisense	genic	0	nested	intronic	no
0	XLOC_323917	TCONS_00324945	LRRTM4	rna36966	antisense	genic	0	nested	intronic	no
0	XLOC_323917	TCONS_00324945	LRRTM4	rna36974	antisense	genic	0	nested	intronic	no
0	XLOC_323917	TCONS_00324945	LRRTM4	rna36969	antisense	genic	0	nested	intronic	no
0	XLOC_323917	TCONS_00324945	LRRTM4	rna36977	antisense	genic	0	nested	intronic	no
0	XLOC_323917	TCONS_00324945	LRRTM4	rna36976	antisense	genic	0	nested	intronic	no
1	XLOC_262823	TCONS_00263658	FCHSD2	rna29739	antisense	genic	0	nested	intronic	no
1	XLOC_021053	TCONS_00021121	PVRL3	rna2278	antisense	intergenic	22994	divergent	upstream	no
1	XLOC_093052	TCONS_00093346	FOXO3	rna10065	sense	intergenic	4307	same_strand	downstream	no
1	XLOC_354201	TCONS_00355355	WRNIP1	rna41573	sense	genic	0	nested	intronic	no
0	XLOC_354201	TCONS_00355355	WRNIP1	rna41574	sense	genic	0	nested	intronic	no
1	XLOC_245985	TCONS_00246769	CDC73	rna28178	sense	genic	0	nested	intronic	no
1	XLOC_137833	TCONS_00138264	AKIRIN2	rna15773	sense	intergenic	29030	same_strand	upstream	no
0	XLOC_137833	TCONS_00138264	LOC106035389	rna15774	sense	intergenic	29429	same_strand	upstream	no
1	XLOC_027922	TCONS_00028010	ALKBH3	rna3300	sense	intergenic	7253	same_strand	downstream	no
1	XLOC_357985	TCONS_00359158	LOC106049760	rna42671	sense	intergenic	392	same_strand	upstream	no
0	XLOC_357985	TCONS_00359158	LOC106049744	rna42666	antisense	intergenic	9536	divergent	upstream	no
0	XLOC_357985	TCONS_00359158	LOC106049762	rna42669	sense	intergenic	1845	same_strand	downstream	no
0	XLOC_357985	TCONS_00359158	LOC106049762	rna42668	sense	intergenic	1845	same_strand	downstream	no
0	XLOC_357985	TCONS_00359158	LOC106049762	rna42667	sense	intergenic	1845	same_strand	downstream	no
0	XLOC_357985	TCONS_00359158	LOC106049762	rna42670	sense	intergenic	1845	same_strand	downstream	no
1	XLOC_260454	TCONS_00261282	KLF12	rna29612	sense	genic	0	nested	intronic	yes
0	XLOC_260454	TCONS_00261282	KLF12	rna29613	sense	genic	0	nested	intronic	yes
1	XLOC_353826	TCONS_00354972	TMEM40	rna41489	antisense	intergenic	2031	divergent	upstream	no
0	XLOC_353826	TCONS_00354972	TMEM40	rna41488	antisense	intergenic	2031	divergent	upstream	no
1	XLOC_292364	TCONS_00293291	GCH1	rna32969	sense	genic	0	nested	intronic	yes
1	XLOC_198091	TCONS_00198721	ANK2	rna22257	antisense	genic	0	nested	intronic	no
0	XLOC_198091	TCONS_00198721	ANK2	rna22258	antisense	genic	0	nested	intronic	no
1	XLOC_073434	TCONS_00073653	EML4	rna7940	sense	intergenic	55747	same_strand	upstream	no
1	XLOC_276704	TCONS_00277586	LOC106043230	rna31385	sense	intergenic	6160	same_strand	upstream	no
1	XLOC_033089	TCONS_00033186	RAP1B	rna3786	sense	intergenic	5518	same_strand	upstream	no
1	XLOC_159432	TCONS_00159951	COBL	rna18002	sense	genic	0	nested	intronic	no
0	XLOC_159432	TCONS_00159951	COBL	rna18000	sense	genic	0	nested	intronic	no
0	XLOC_159432	TCONS_00159951	LOC106036569	rna18007	antisense	intergenic	9666	divergent	upstream	no
0	XLOC_159432	TCONS_00159951	COBL	rna18003	sense	genic	0	nested	intronic	no
0	XLOC_159432	TCONS_00159951	COBL	rna18004	sense	genic	0	nested	intronic	no
0	XLOC_159432	TCONS_00159951	COBL	rna18006	sense	genic	0	nested	intronic	no
0	XLOC_159432	TCONS_00159951	COBL	rna17999	sense	genic	0	nested	intronic	no
0	XLOC_159432	TCONS_00159951	COBL	rna18001	sense	genic	0	nested	intronic	no
0	XLOC_159432	TCONS_00159951	COBL	rna18005	sense	genic	0	nested	intronic	no
1	XLOC_312469	TCONS_00313470	LOC106045285	rna35190	sense	intergenic	55058	same_strand	upstream	no
0	XLOC_312469	TCONS_00313470	LOC106045285	rna35191	sense	intergenic	55058	same_strand	upstream	no
0	XLOC_312469	TCONS_00313470	LOC106045285	rna35192	sense	intergenic	55058	same_strand	upstream	no
0	XLOC_312469	TCONS_00313470	LOC106045285	rna35193	sense	intergenic	55058	same_strand	upstream	no
1	XLOC_212593	TCONS_00213274	LOC106039385	rna23888	sense	intergenic	44853	same_strand	downstream	no
0	XLOC_212593	TCONS_00213274	LOC106039385	rna23887	sense	intergenic	44853	same_strand	downstream	no
0	XLOC_212593	TCONS_00213274	LOC106039385	rna23889	sense	intergenic	44853	same_strand	downstream	no
1	XLOC_133942	TCONS_00134354	LOC106035251	rna15511	antisense	intergenic	23	divergent	upstream	no
0	XLOC_133942	TCONS_00134354	MTERF3	rna15514	antisense	intergenic	632	convergent	downstream	no
0	XLOC_133942	TCONS_00134354	LOC106035261	rna15510	sense	intergenic	9499	same_strand	downstream	no
0	XLOC_133942	TCONS_00134354	MTERF3	rna15512	antisense	intergenic	632	convergent	downstream	no
0	XLOC_133942	TCONS_00134354	MTERF3	rna15513	antisense	intergenic	632	convergent	downstream	no
1	XLOC_119185	TCONS_00119561	AGAP1	rna13851	sense	intergenic	12481	same_strand	upstream	no
0	XLOC_119185	TCONS_00119561	LOC106034527	rna13849	antisense	intergenic	18084	divergent	upstream	no
0	XLOC_119185	TCONS_00119561	AGAP1	rna13850	sense	intergenic	12481	same_strand	upstream	no
0	XLOC_119185	TCONS_00119561	LOC106034527	rna13848	antisense	intergenic	18084	divergent	upstream	no
0	XLOC_119185	TCONS_00119561	AGAP1	rna13852	sense	intergenic	12481	same_strand	upstream	no
1	XLOC_058807	TCONS_00058984	CPA6	rna6299	antisense	intergenic	15703	convergent	downstream	no
1	XLOC_074844	TCONS_00075069	RAD51B	rna8234	antisense	genic	0	nested	intronic	no
0	XLOC_074844	TCONS_00075069	RAD51B	rna8235	antisense	genic	0	nested	intronic	no
0	XLOC_074844	TCONS_00075069	RAD51B	rna8233	antisense	genic	0	nested	intronic	no
0	XLOC_074844	TCONS_00075069	RAD51B	rna8237	antisense	genic	0	nested	intronic	no
0	XLOC_074844	TCONS_00075069	RAD51B	rna8230	antisense	genic	0	nested	intronic	no
0	XLOC_074844	TCONS_00075069	RAD51B	rna8229	antisense	genic	0	nested	intronic	no
0	XLOC_074844	TCONS_00075069	RAD51B	rna8236	antisense	genic	0	nested	intronic	no
0	XLOC_074844	TCONS_00075069	RAD51B	rna8231	antisense	genic	0	nested	intronic	no
1	XLOC_351493	TCONS_00352630	PLEKHM2	rna41052	sense	genic	0	nested	intronic	yes
0	XLOC_351493	TCONS_00352630	PLEKHM2	rna41054	sense	genic	0	nested	intronic	yes
0	XLOC_351493	TCONS_00352630	PLEKHM2	rna41051	sense	genic	0	nested	intronic	yes
0	XLOC_351493	TCONS_00352630	PLEKHM2	rna41053	sense	genic	0	nested	intronic	yes
1	XLOC_271728	TCONS_00272599	GCNT4	rna30768	sense	intergenic	31589	same_strand	downstream	no
0	XLOC_271728	TCONS_00272599	FAM169A	rna30778	sense	intergenic	37236	same_strand	upstream	no
0	XLOC_271728	TCONS_00272599	GCNT4	rna30776	sense	intergenic	35560	same_strand	downstream	no
0	XLOC_271728	TCONS_00272599	GCNT4	rna30771	sense	intergenic	35561	same_strand	downstream	no
0	XLOC_271728	TCONS_00272599	GCNT4	rna30766	sense	intergenic	35524	same_strand	downstream	no
0	XLOC_271728	TCONS_00272599	GCNT4	rna30774	sense	intergenic	35560	same_strand	downstream	no
0	XLOC_271728	TCONS_00272599	GCNT4	rna30769	sense	intergenic	31589	same_strand	downstream	no
0	XLOC_271728	TCONS_00272599	GCNT4	rna30772	sense	intergenic	35562	same_strand	downstream	no
0	XLOC_271728	TCONS_00272599	GCNT4	rna30765	sense	intergenic	31589	same_strand	downstream	no
0	XLOC_271728	TCONS_00272599	GCNT4	rna30763	sense	intergenic	31589	same_strand	downstream	no
0	XLOC_271728	TCONS_00272599	LOC106042923	rna30777	antisense	intergenic	34836	divergent	upstream	no
0	XLOC_271728	TCONS_00272599	GCNT4	rna30775	sense	intergenic	35560	same_strand	downstream	no
0	XLOC_271728	TCONS_00272599	LOC106042924	rna30767	antisense	intergenic	37844	divergent	upstream	no
0	XLOC_271728	TCONS_00272599	GCNT4	rna30764	sense	intergenic	31589	same_strand	downstream	no
0	XLOC_271728	TCONS_00272599	GCNT4	rna30762	sense	intergenic	31589	same_strand	downstream	no
0	XLOC_271728	TCONS_00272599	GCNT4	rna30773	sense	intergenic	36782	same_strand	downstream	no
0	XLOC_271728	TCONS_00272599	GCNT4	rna30770	sense	intergenic	31589	same_strand	downstream	no
1	XLOC_173768	TCONS_00174327	LOC106037284	rna19331	sense	intergenic	17980	same_strand	downstream	no
0	XLOC_173768	TCONS_00174327	LOC106037284	rna19333	sense	intergenic	17980	same_strand	downstream	no
0	XLOC_173768	TCONS_00174327	LOC106037284	rna19332	sense	intergenic	17980	same_strand	downstream	no
1	XLOC_251988	TCONS_00252790	PKD2	rna28848	sense	intergenic	58	same_strand	downstream	no
0	XLOC_251988	TCONS_00252790	PKD2	rna28845	sense	intergenic	2566	same_strand	downstream	no
0	XLOC_251988	TCONS_00252790	PKD2	rna28846	sense	intergenic	2566	same_strand	downstream	no
0	XLOC_251988	TCONS_00252790	ABCG2	rna28849	antisense	intergenic	930	convergent	downstream	no
0	XLOC_251988	TCONS_00252790	PKD2	rna28847	sense	intergenic	2565	same_strand	downstream	no
1	XLOC_225360	TCONS_00226068	CAB39	rna25702	sense	intergenic	3373	same_strand	downstream	no
1	XLOC_351754	TCONS_00352892	LOC106048698	rna41165	sense	intergenic	208	same_strand	upstream	no
0	XLOC_351754	TCONS_00352892	LOC106048697	rna41167	antisense	intergenic	2653	divergent	upstream	no
0	XLOC_351754	TCONS_00352892	LOC106048697	rna41166	antisense	intergenic	2653	divergent	upstream	no
0	XLOC_351754	TCONS_00352892	LOC106048697	rna41168	antisense	intergenic	7623	divergent	upstream	no
1	XLOC_102529	TCONS_00102862	LOC106033548	rna11952	antisense	intergenic	3072	convergent	downstream	no
0	XLOC_102529	TCONS_00102862	CHST12	rna11949	sense	intergenic	4860	same_strand	downstream	no
0	XLOC_102529	TCONS_00102862	CHST12	rna11950	sense	intergenic	4860	same_strand	downstream	no
0	XLOC_102529	TCONS_00102862	CHST12	rna11947	sense	intergenic	4860	same_strand	downstream	no
0	XLOC_102529	TCONS_00102862	CHST12	rna11951	sense	intergenic	4860	same_strand	downstream	no
1	XLOC_272701	TCONS_00273573	LOC106042959	rna30836	antisense	intergenic	96865	convergent	downstream	no
0	XLOC_272701	TCONS_00273573	LOC106042947	rna30834	antisense	intergenic	97878	divergent	upstream	no
0	XLOC_272701	TCONS_00273573	LOC106042959	rna30839	antisense	intergenic	96865	convergent	downstream	no
0	XLOC_272701	TCONS_00273573	LOC106042959	rna30835	antisense	intergenic	96865	convergent	downstream	no
0	XLOC_272701	TCONS_00273573	LOC106042959	rna30837	antisense	intergenic	96865	convergent	downstream	no
0	XLOC_272701	TCONS_00273573	LOC106042959	rna30838	antisense	intergenic	96865	convergent	downstream	no
1	XLOC_259940	TCONS_00260768	SLC24A3	rna29456	sense	intergenic	11197	same_strand	upstream	no
0	XLOC_259940	TCONS_00260768	SLC24A3	rna29455	sense	intergenic	11227	same_strand	upstream	no
0	XLOC_259940	TCONS_00260768	SLC24A3	rna29459	sense	intergenic	11227	same_strand	upstream	no
0	XLOC_259940	TCONS_00260768	SLC24A3	rna29460	sense	intergenic	18597	same_strand	upstream	no
0	XLOC_259940	TCONS_00260768	SLC24A3	rna29463	sense	intergenic	11227	same_strand	upstream	no
0	XLOC_259940	TCONS_00260768	SLC24A3	rna29457	sense	intergenic	11197	same_strand	upstream	no
0	XLOC_259940	TCONS_00260768	SLC24A3	rna29458	sense	intergenic	11227	same_strand	upstream	no
1	XLOC_194743	TCONS_00195364	SNTB1	rna21955	sense	intergenic	50325	same_strand	upstream	yes
1	XLOC_299994	TCONS_00300953	DIO2	rna33881	sense	intergenic	15201	same_strand	downstream	yes
0	XLOC_299994	TCONS_00300953	DIO2	rna33882	sense	intergenic	19948	same_strand	downstream	yes
1	XLOC_247789	TCONS_00248582	LOC106041719	rna28478	antisense	intergenic	2764	divergent	upstream	no
1	XLOC_135414	TCONS_00135838	ZFPM2	rna15622	antisense	intergenic	61637	divergent	upstream	yes
1	XLOC_224919	TCONS_00225624	SPINK4	rna25627	sense	intergenic	5148	same_strand	upstream	no
1	XLOC_304557	TCONS_00305537	CRISPLD2	rna34450	antisense	intergenic	21478	convergent	downstream	no
0	XLOC_304557	TCONS_00305537	CRISPLD2	rna34452	antisense	intergenic	21478	convergent	downstream	no
0	XLOC_304557	TCONS_00305537	LOC106044845	rna34453	antisense	intergenic	23706	divergent	upstream	no
0	XLOC_304557	TCONS_00305537	CRISPLD2	rna34451	antisense	intergenic	21478	convergent	downstream	no
0	XLOC_304557	TCONS_00305537	LOC106044845	rna34454	antisense	intergenic	23706	divergent	upstream	no
1	XLOC_163503	TCONS_00164033	BHLHE40	rna18521	antisense	intergenic	2050	divergent	upstream	yes
1	XLOC_166561	TCONS_00167100	GARS	rna18708	sense	intergenic	10363	same_strand	upstream	no
1	XLOC_088645	TCONS_00088924	IFNGR1	rna9911	antisense	intergenic	2281	divergent	upstream	no
1	XLOC_027160	TCONS_00027241	LOC106042281	rna2897	sense	genic	0	nested	intronic	yes
0	XLOC_027160	TCONS_00027241	LOC106042281	rna2898	sense	intergenic	404	same_strand	upstream	yes
0	XLOC_027160	TCONS_00027241	LOC106042281	rna2895	sense	genic	0	nested	intronic	yes
0	XLOC_027160	TCONS_00027241	LOC106042281	rna2896	sense	genic	0	nested	intronic	yes
1	XLOC_100167	TCONS_00100487	LOC106033277	rna11352	antisense	intergenic	7222	convergent	downstream	no
1	XLOC_100116	TCONS_00100435	WWOX	rna11346	sense	intergenic	99064	same_strand	downstream	no
0	XLOC_100116	TCONS_00100435	WWOX	rna11350	sense	intergenic	99065	same_strand	downstream	no
1	XLOC_104493	TCONS_00104839	PSMA4	rna12392	sense	intergenic	202	same_strand	downstream	no
0	XLOC_104493	TCONS_00104839	CHRNA5	rna12394	sense	intergenic	4092	same_strand	upstream	no
0	XLOC_104493	TCONS_00104839	CHRNA5	rna12396	sense	intergenic	6796	same_strand	upstream	no
0	XLOC_104493	TCONS_00104839	CHRNA5	rna12397	sense	intergenic	6796	same_strand	upstream	no
0	XLOC_104493	TCONS_00104839	CHRNA5	rna12395	sense	intergenic	6795	same_strand	upstream	no
0	XLOC_104493	TCONS_00104839	CHRNA5	rna12393	sense	intergenic	4092	same_strand	upstream	no
0	XLOC_104493	TCONS_00104839	HYKK	rna12391	sense	intergenic	5749	same_strand	downstream	yes
1	XLOC_070039	TCONS_00070244	NCOR2	rna7348	sense	genic	0	nested	intronic	no
1	XLOC_177554	TCONS_00178125	LOC106037365	rna19862	sense	intergenic	20070	same_strand	upstream	no
1	XLOC_317927	TCONS_00318939	OAZ1	rna36002	antisense	intergenic	3357	divergent	upstream	no
0	XLOC_317927	TCONS_00318939	LOC106045625	rna36003	sense	intergenic	9720	same_strand	downstream	no
1	XLOC_061663	TCONS_00061845	LOC106030840	rna6367	sense	intergenic	32956	same_strand	downstream	no
1	XLOC_182139	TCONS_00182732	ZNF521	rna20142	sense	genic	0	nested	intronic	no
0	XLOC_182139	TCONS_00182732	ZNF521	rna20143	sense	genic	0	nested	intronic	no
0	XLOC_182139	TCONS_00182732	ZNF521	rna20144	sense	genic	0	nested	intronic	no
1	XLOC_355814	TCONS_00356983	IRF8	rna41927	antisense	intergenic	4815	convergent	downstream	no
0	XLOC_355814	TCONS_00356983	LOC106049258	rna41928	antisense	intergenic	8368	divergent	upstream	no
0	XLOC_355814	TCONS_00356983	LOC106049259	rna41929	sense	intergenic	8370	same_strand	downstream	no
1	XLOC_166561	TCONS_00167099	GARS	rna18708	sense	intergenic	10363	same_strand	upstream	no
1	XLOC_098178	TCONS_00098485	PPAP2B	rna10758	antisense	intergenic	43909	convergent	downstream	no
0	XLOC_098178	TCONS_00098485	PPAP2B	rna10757	antisense	intergenic	44229	convergent	downstream	no
1	XLOC_312732	TCONS_00313734	LOC106045331	rna35272	sense	genic	0	nested	intronic	no
0	XLOC_312732	TCONS_00313734	TACR3	rna35273	antisense	intergenic	674	divergent	upstream	no
1	XLOC_132136	TCONS_00132546	LOC106035190	rna15479	sense	intergenic	20232	same_strand	upstream	no
0	XLOC_132136	TCONS_00132546	LOC106035127	rna15480	sense	intergenic	22213	same_strand	upstream	no
0	XLOC_132136	TCONS_00132546	WWC2	rna15483	antisense	intergenic	23728	convergent	downstream	no
0	XLOC_132136	TCONS_00132546	WWC2	rna15481	antisense	intergenic	23728	convergent	downstream	no
0	XLOC_132136	TCONS_00132546	WWC2	rna15485	antisense	intergenic	23728	convergent	downstream	no
0	XLOC_132136	TCONS_00132546	LOC106035137	rna15476	sense	intergenic	26309	same_strand	downstream	no
0	XLOC_132136	TCONS_00132546	WWC2	rna15482	antisense	intergenic	23728	convergent	downstream	no
0	XLOC_132136	TCONS_00132546	WWC2	rna15484	antisense	intergenic	23728	convergent	downstream	no
0	XLOC_132136	TCONS_00132546	LOC106035137	rna15477	sense	intergenic	26309	same_strand	downstream	no
0	XLOC_132136	TCONS_00132546	CDKN2AIP	rna15478	antisense	intergenic	20648	divergent	upstream	no
1	XLOC_337886	TCONS_00338975	VLDLR	rna39001	antisense	intergenic	2273	divergent	upstream	no
1	XLOC_126583	TCONS_00126974	APCDD1	rna14876	antisense	intergenic	10007	divergent	upstream	yes
1	XLOC_071414	TCONS_00071628	LOC106031476	rna7868	sense	intergenic	22673	same_strand	downstream	no
1	XLOC_312469	TCONS_00313469	LOC106045285	rna35190	sense	intergenic	49938	same_strand	upstream	no
0	XLOC_312469	TCONS_00313469	LOC106045285	rna35191	sense	intergenic	49938	same_strand	upstream	no
0	XLOC_312469	TCONS_00313469	LOC106045285	rna35192	sense	intergenic	49938	same_strand	upstream	no
0	XLOC_312469	TCONS_00313469	LOC106045285	rna35193	sense	intergenic	49938	same_strand	upstream	no
1	XLOC_097638	TCONS_00097944	TAL1	rna10920	sense	intergenic	2992	same_strand	downstream	no
1	XLOC_205013	TCONS_00205679	EBF3	rna22959	antisense	intergenic	14508	divergent	upstream	no
1	XLOC_171275	TCONS_00171825	FAM102A	rna19069	antisense	genic	0	nested	intronic	no
1	XLOC_350319	TCONS_00351449	ALX3	rna40731	antisense	intergenic	4373	divergent	upstream	no
1	XLOC_189739	TCONS_00190346	RASSF8	rna21373	antisense	intergenic	9231	divergent	upstream	no
1	XLOC_139294	TCONS_00139732	MITF	rna16011	sense	intergenic	2451	same_strand	upstream	no
1	XLOC_289124	TCONS_00290043	LOC106043852	rna32604	sense	genic	0	nested	intronic	no
0	XLOC_289124	TCONS_00290043	PRPF4B	rna32607	antisense	intergenic	4305	divergent	upstream	yes
0	XLOC_289124	TCONS_00290043	PRPF4B	rna32606	antisense	intergenic	4305	divergent	upstream	yes
0	XLOC_289124	TCONS_00290043	LOC106043852	rna32605	sense	genic	0	nested	intronic	no
0	XLOC_289124	TCONS_00290043	LOC106043852	rna32603	sense	genic	0	nested	intronic	no
0	XLOC_289124	TCONS_00290043	LOC106043853	rna32608	sense	intergenic	8852	same_strand	downstream	no
1	XLOC_080387	TCONS_00080631	SLF2	rna8609	sense	intergenic	2301	same_strand	upstream	no
0	XLOC_080387	TCONS_00080631	SLF2	rna8610	sense	intergenic	7144	same_strand	upstream	no
1	XLOC_204766	TCONS_00205425	DOCK1	rna22928	sense	intergenic	12143	same_strand	downstream	no
0	XLOC_204766	TCONS_00205425	NPS	rna22936	sense	intergenic	15772	same_strand	upstream	no
1	XLOC_031194	TCONS_00031289	TMEM117	rna3932	antisense	genic	0	nested	intronic	no
0	XLOC_031194	TCONS_00031289	TMEM117	rna3933	antisense	genic	0	nested	intronic	no
0	XLOC_031194	TCONS_00031289	TMEM117	rna3934	antisense	genic	0	nested	intronic	no
0	XLOC_031194	TCONS_00031289	TMEM117	rna3942	antisense	genic	0	nested	intronic	no
0	XLOC_031194	TCONS_00031289	TMEM117	rna3935	antisense	genic	0	nested	intronic	no
0	XLOC_031194	TCONS_00031289	TMEM117	rna3938	antisense	genic	0	nested	intronic	no
0	XLOC_031194	TCONS_00031289	TMEM117	rna3941	antisense	genic	0	nested	intronic	no
0	XLOC_031194	TCONS_00031289	TMEM117	rna3943	antisense	genic	0	nested	intronic	no
0	XLOC_031194	TCONS_00031289	TMEM117	rna3936	antisense	genic	0	nested	intronic	no
0	XLOC_031194	TCONS_00031289	TMEM117	rna3940	antisense	genic	0	nested	intronic	no
0	XLOC_031194	TCONS_00031289	TMEM117	rna3939	antisense	genic	0	nested	intronic	no
0	XLOC_031194	TCONS_00031289	TMEM117	rna3937	antisense	genic	0	nested	intronic	no
1	XLOC_032382	TCONS_00032478	NAV3	rna3687	sense	genic	0	nested	intronic	no
1	XLOC_344126	TCONS_00345237	LOC106047813	rna39743	sense	genic	0	nested	intronic	yes
0	XLOC_344126	TCONS_00345237	LOC106047813	rna39746	sense	intergenic	718	same_strand	upstream	yes
0	XLOC_344126	TCONS_00345237	LOC106047813	rna39744	sense	genic	0	nested	intronic	yes
0	XLOC_344126	TCONS_00345237	LOC106047813	rna39745	sense	genic	0	nested	intronic	yes
1	XLOC_104977	TCONS_00105330	WDR72	rna12086	sense	intergenic	24296	same_strand	downstream	no
0	XLOC_104977	TCONS_00105330	WDR72	rna12089	sense	intergenic	24297	same_strand	downstream	no
0	XLOC_104977	TCONS_00105330	WDR72	rna12087	sense	intergenic	24296	same_strand	downstream	no
0	XLOC_104977	TCONS_00105330	WDR72	rna12085	sense	intergenic	24296	same_strand	downstream	no
0	XLOC_104977	TCONS_00105330	WDR72	rna12090	sense	intergenic	24297	same_strand	downstream	no
0	XLOC_104977	TCONS_00105330	WDR72	rna12091	sense	intergenic	24298	same_strand	downstream	no
0	XLOC_104977	TCONS_00105330	WDR72	rna12088	sense	intergenic	24296	same_strand	downstream	no
1	XLOC_147745	TCONS_00148217	BTBD11	rna16680	sense	genic	0	nested	intronic	no
0	XLOC_147745	TCONS_00148217	BTBD11	rna16681	sense	genic	0	nested	intronic	no
0	XLOC_147745	TCONS_00148217	BTBD11	rna16679	sense	genic	0	nested	intronic	no
1	XLOC_145509	TCONS_00145975	GABRG3	rna16459	sense	genic	0	nested	intronic	no
0	XLOC_145509	TCONS_00145975	GABRG3	rna16458	sense	genic	0	nested	intronic	no
1	XLOC_026481	TCONS_00026561	FAM65C	rna2716	sense	genic	0	nested	intronic	no
0	XLOC_026481	TCONS_00026561	FAM65C	rna2714	sense	genic	0	nested	intronic	no
0	XLOC_026481	TCONS_00026561	FAM65C	rna2715	sense	genic	0	nested	intronic	no
1	XLOC_105667	TCONS_00106021	LOC106033776	rna12406	antisense	intergenic	16344	divergent	upstream	no
0	XLOC_105667	TCONS_00106021	CHRNB4	rna12401	sense	intergenic	17970	same_strand	upstream	no
0	XLOC_105667	TCONS_00106021	CHRNB4	rna12402	sense	intergenic	17970	same_strand	upstream	no
0	XLOC_105667	TCONS_00106021	CHRNB4	rna12399	sense	intergenic	17970	same_strand	upstream	no
0	XLOC_105667	TCONS_00106021	CHRNB4	rna12400	sense	intergenic	17970	same_strand	upstream	no
1	XLOC_343665	TCONS_00344774	GLUL	rna39697	sense	intergenic	14176	same_strand	downstream	no
0	XLOC_343665	TCONS_00344774	ZNF648	rna39698	antisense	intergenic	17729	convergent	downstream	no
1	XLOC_025867	TCONS_00025945	SHANK2	rna3398	sense	genic	0	nested	intronic	yes
0	XLOC_025867	TCONS_00025945	SHANK2	rna3399	sense	genic	0	nested	intronic	yes
0	XLOC_025867	TCONS_00025945	LOC106044639	rna3404	sense	intergenic	932	same_strand	upstream	no
0	XLOC_025867	TCONS_00025945	SHANK2	rna3400	sense	genic	0	nested	intronic	yes
1	XLOC_147114	TCONS_00147582	CD99	rna16545	antisense	intergenic	26373	divergent	upstream	no
0	XLOC_147114	TCONS_00147582	CD99	rna16546	antisense	intergenic	26375	divergent	upstream	no
0	XLOC_147114	TCONS_00147582	CD99	rna16544	antisense	intergenic	26373	divergent	upstream	no
0	XLOC_147114	TCONS_00147582	CD99	rna16547	antisense	intergenic	27419	divergent	upstream	no
0	XLOC_147114	TCONS_00147582	CD99	rna16543	antisense	intergenic	26373	divergent	upstream	no
1	XLOC_127870	TCONS_00128266	APCDD1	rna14876	sense	intergenic	15422	same_strand	upstream	yes
0	XLOC_127870	TCONS_00128266	LOC106034920	rna14877	antisense	intergenic	18848	divergent	upstream	no
0	XLOC_127870	TCONS_00128266	LOC106034920	rna14878	antisense	intergenic	19126	divergent	upstream	no
1	XLOC_102409	TCONS_00102736	PDGFA	rna11856	antisense	intergenic	6019	convergent	downstream	no
1	XLOC_185127	TCONS_00185725	SAT1	rna20664	sense	intergenic	3460	same_strand	downstream	no
0	XLOC_185127	TCONS_00185725	APOO	rna20668	antisense	intergenic	8227	convergent	downstream	no
0	XLOC_185127	TCONS_00185725	APOO	rna20665	antisense	intergenic	8227	convergent	downstream	no
0	XLOC_185127	TCONS_00185725	APOO	rna20667	antisense	intergenic	8227	convergent	downstream	no
0	XLOC_185127	TCONS_00185725	APOO	rna20666	antisense	intergenic	8227	convergent	downstream	no
0	XLOC_185127	TCONS_00185725	APOO	rna20669	antisense	intergenic	8227	convergent	downstream	no
1	XLOC_037208	TCONS_00037319	TTC7A	rna4519	antisense	intergenic	2266	convergent	downstream	no
0	XLOC_037208	TCONS_00037319	CALM2	rna4518	sense	intergenic	7335	same_strand	downstream	no
0	XLOC_037208	TCONS_00037319	TTC7A	rna4524	antisense	intergenic	7264	convergent	downstream	no
0	XLOC_037208	TCONS_00037319	TTC7A	rna4522	antisense	intergenic	7264	convergent	downstream	no
0	XLOC_037208	TCONS_00037319	TTC7A	rna4520	antisense	intergenic	5209	convergent	downstream	no
0	XLOC_037208	TCONS_00037319	TTC7A	rna4521	antisense	intergenic	7264	convergent	downstream	no
0	XLOC_037208	TCONS_00037319	TTC7A	rna4523	antisense	intergenic	7264	convergent	downstream	no
1	XLOC_010054	TCONS_00010080	LOC106033845	rna1645	sense	intergenic	40166	same_strand	downstream	no
1	XLOC_185499	TCONS_00186097	RBBP7	rna20548	sense	intergenic	877	same_strand	downstream	no
0	XLOC_185499	TCONS_00186097	TXLNG	rna20547	antisense	intergenic	3427	convergent	downstream	no
1	XLOC_201994	TCONS_00202632	RALGAPA1	rna22582	sense	genic	0	nested	intronic	yes
1	XLOC_309775	TCONS_00310763	UBAP1	rna35020	sense	intergenic	799	same_strand	upstream	no
0	XLOC_309775	TCONS_00310763	DCAF12	rna35018	antisense	intergenic	2772	divergent	upstream	no
0	XLOC_309775	TCONS_00310763	UBAP1	rna35021	sense	intergenic	1046	same_strand	upstream	no
0	XLOC_309775	TCONS_00310763	DCAF12	rna35019	antisense	intergenic	2773	divergent	upstream	no
1	XLOC_038357	TCONS_00038481	AKT3	rna4246	sense	genic	0	nested	intronic	no
1	XLOC_328129	TCONS_00329170	LOC106046432	rna37319	antisense	intergenic	4569	convergent	downstream	no
1	XLOC_009947	TCONS_00009973	STIM2	rna1637	sense	genic	0	nested	intronic	no
0	XLOC_009947	TCONS_00009973	STIM2	rna1636	sense	genic	0	nested	intronic	no
0	XLOC_009947	TCONS_00009973	STIM2	rna1638	sense	genic	0	nested	intronic	no
1	XLOC_238175	TCONS_00238935	ARHGAP15	rna27121	antisense	intergenic	29568	convergent	downstream	no
0	XLOC_238175	TCONS_00238935	ARHGAP15	rna27122	antisense	intergenic	29568	convergent	downstream	no
0	XLOC_238175	TCONS_00238935	ARHGAP15	rna27120	antisense	intergenic	29568	convergent	downstream	no
0	XLOC_238175	TCONS_00238935	ARHGAP15	rna27123	antisense	intergenic	29568	convergent	downstream	no
0	XLOC_238175	TCONS_00238935	ARHGAP15	rna27118	antisense	intergenic	29568	convergent	downstream	no
0	XLOC_238175	TCONS_00238935	ARHGAP15	rna27119	antisense	intergenic	29568	convergent	downstream	no
1	XLOC_098985	TCONS_00099301	LOC106032948	rna10941	antisense	intergenic	178	divergent	upstream	no
1	XLOC_335552	TCONS_00336625	NTMT1	rna38768	antisense	intergenic	40825	divergent	upstream	no
0	XLOC_335552	TCONS_00336625	LOC106047298	rna38769	antisense	intergenic	46154	convergent	downstream	no
0	XLOC_335552	TCONS_00336625	ASB6	rna38767	sense	intergenic	42868	same_strand	downstream	no
1	XLOC_007746	TCONS_00007769	CTBP1	rna1207	antisense	intergenic	15503	convergent	downstream	no
0	XLOC_007746	TCONS_00007769	CTBP1	rna1205	antisense	intergenic	15503	convergent	downstream	no
0	XLOC_007746	TCONS_00007769	CTBP1	rna1202	antisense	intergenic	15503	convergent	downstream	no
0	XLOC_007746	TCONS_00007769	CTBP1	rna1203	antisense	intergenic	15503	convergent	downstream	no
0	XLOC_007746	TCONS_00007769	CTBP1	rna1206	antisense	intergenic	15503	convergent	downstream	no
0	XLOC_007746	TCONS_00007769	CTBP1	rna1208	antisense	intergenic	15503	convergent	downstream	no
0	XLOC_007746	TCONS_00007769	CTBP1	rna1204	antisense	intergenic	15503	convergent	downstream	no
1	XLOC_358265	TCONS_00359442	LOC106049848	rna42785	sense	genic	0	nested	intronic	yes
0	XLOC_358265	TCONS_00359442	LOC106049847	rna42784	sense	intergenic	3398	same_strand	upstream	yes
0	XLOC_358265	TCONS_00359442	LOC106049849	rna42786	antisense	intergenic	4330	divergent	upstream	yes
1	XLOC_318427	TCONS_00319441	YPEL2	rna36101	antisense	genic	0	nested	intronic	yes
0	XLOC_318427	TCONS_00319441	YPEL2	rna36099	antisense	genic	0	nested	intronic	yes
0	XLOC_318427	TCONS_00319441	YPEL2	rna36100	antisense	genic	0	nested	intronic	yes
0	XLOC_318427	TCONS_00319441	LOC106045807	rna36102	antisense	intergenic	4029	convergent	downstream	no
0	XLOC_318427	TCONS_00319441	LOC106045808	rna36103	antisense	intergenic	6447	convergent	downstream	no
1	XLOC_266820	TCONS_00267672	ABI1	rna30370	sense	genic	0	nested	intronic	yes
1	XLOC_098178	TCONS_00098488	PPAP2B	rna10758	antisense	intergenic	63141	convergent	downstream	no
0	XLOC_098178	TCONS_00098488	PPAP2B	rna10757	antisense	intergenic	63461	convergent	downstream	no
1	XLOC_132092	TCONS_00132502	IRF2	rna15447	sense	intergenic	1920	same_strand	downstream	no
0	XLOC_132092	TCONS_00132502	IRF2	rna15448	sense	intergenic	1920	same_strand	downstream	no
0	XLOC_132092	TCONS_00132502	IRF2	rna15449	sense	intergenic	1920	same_strand	downstream	no
0	XLOC_132092	TCONS_00132502	IRF2	rna15446	sense	intergenic	1920	same_strand	downstream	no
0	XLOC_132092	TCONS_00132502	IRF2	rna15450	sense	intergenic	2951	same_strand	downstream	no
1	XLOC_079454	TCONS_00079689	LOC106031885	rna8727	antisense	intergenic	8372	convergent	downstream	no
1	XLOC_128797	TCONS_00129200	WDFY2	rna15009	antisense	intergenic	645	divergent	upstream	no
1	XLOC_237673	TCONS_00238436	LOC106041021	rna27168	sense	intergenic	10587	same_strand	upstream	no
0	XLOC_237673	TCONS_00238436	LOC106041021	rna27169	sense	intergenic	10587	same_strand	upstream	no
1	XLOC_104568	TCONS_00104914	GALK2	rna11980	sense	intergenic	10465	same_strand	downstream	no
0	XLOC_104568	TCONS_00104914	FGF7	rna11979	sense	intergenic	17139	same_strand	upstream	no
0	XLOC_104568	TCONS_00104914	FGF7	rna11978	sense	intergenic	17027	same_strand	upstream	no
1	XLOC_235898	TCONS_00236653	PCDH18	rna27059	sense	intergenic	2018	same_strand	upstream	yes
0	XLOC_235898	TCONS_00236653	PCDH18	rna27058	sense	intergenic	2018	same_strand	upstream	yes
1	XLOC_230153	TCONS_00230876	LOC106040459	rna26095	sense	intergenic	47645	same_strand	downstream	no
1	XLOC_276520	TCONS_00277402	ZNF638	rna31318	sense	intergenic	6759	same_strand	upstream	no
0	XLOC_276520	TCONS_00277402	ZNF638	rna31317	sense	intergenic	6759	same_strand	upstream	no
1	XLOC_147748	TCONS_00148220	BTBD11	rna16680	sense	genic	0	nested	intronic	no
0	XLOC_147748	TCONS_00148220	BTBD11	rna16681	sense	genic	0	nested	intronic	no
0	XLOC_147748	TCONS_00148220	BTBD11	rna16679	sense	genic	0	nested	intronic	no
1	XLOC_238927	TCONS_00239696	GATSL2	rna27305	sense	genic	0	nested	intronic	no
1	XLOC_078389	TCONS_00078619	FARP1	rna8536	sense	genic	0	nested	intronic	yes
0	XLOC_078389	TCONS_00078619	FARP1	rna8537	sense	intergenic	7536	same_strand	upstream	yes
1	XLOC_280440	TCONS_00281335	PDE8A	rna31665	sense	genic	0	nested	intronic	no
0	XLOC_280440	TCONS_00281335	PDE8A	rna31666	sense	genic	0	nested	intronic	no
0	XLOC_280440	TCONS_00281335	PDE8A	rna31664	sense	genic	0	nested	intronic	no
0	XLOC_280440	TCONS_00281335	PDE8A	rna31667	sense	genic	0	nested	intronic	no
0	XLOC_280440	TCONS_00281335	PDE8A	rna31663	sense	genic	0	nested	intronic	no
1	XLOC_295095	TCONS_00296028	SPSB1	rna33458	sense	intergenic	26707	same_strand	downstream	no
0	XLOC_295095	TCONS_00296028	SLC25A33	rna33459	sense	intergenic	26966	same_strand	upstream	yes
1	XLOC_172703	TCONS_00173259	ARRDC1	rna19179	sense	intergenic	2452	same_strand	upstream	no
1	XLOC_240960	TCONS_00241736	LOC106041227	rna27531	sense	intergenic	2763	same_strand	upstream	yes
0	XLOC_240960	TCONS_00241736	LOC106041227	rna27532	sense	intergenic	2763	same_strand	upstream	yes
1	XLOC_232957	TCONS_00233684	DAB2IP	rna26536	sense	genic	0	nested	intronic	no
1	XLOC_312010	TCONS_00313007	LOC106045289	rna35189	antisense	intergenic	46368	divergent	upstream	no
1	XLOC_038868	TCONS_00038992	CRIM1	rna4326	antisense	intergenic	34834	divergent	upstream	yes
1	XLOC_354611	TCONS_00355773	COG6	rna41689	antisense	intergenic	12977	convergent	downstream	no
1	XLOC_349920	TCONS_00351049	RFX2	rna40689	sense	intergenic	3319	same_strand	upstream	no
1	XLOC_343051	TCONS_00344156	RACGAP1	rna39571	antisense	intergenic	6436	convergent	downstream	yes
0	XLOC_343051	TCONS_00344156	HDAC7	rna39562	antisense	intergenic	9755	divergent	upstream	no
0	XLOC_343051	TCONS_00344156	LOC106047726	rna39570	antisense	intergenic	8531	divergent	upstream	no
0	XLOC_343051	TCONS_00344156	RACGAP1	rna39572	antisense	intergenic	6436	convergent	downstream	yes
1	XLOC_033386	TCONS_00033492	MSRB3	rna3826	sense	intergenic	3287	same_strand	downstream	yes
1	XLOC_126326	TCONS_00126717	LOC106034989	rna14819	sense	intergenic	19714	same_strand	upstream	no
0	XLOC_126326	TCONS_00126717	LOC106034989	rna14820	sense	intergenic	19982	same_strand	upstream	no
1	XLOC_347579	TCONS_00348705	BNC2	rna40378	antisense	genic	0	nested	intronic	no
1	XLOC_003651	TCONS_00003659	HPSE2	rna79	sense	intergenic	1498	same_strand	upstream	no
1	XLOC_340060	TCONS_00341157	LOC106047517	rna39248	sense	intergenic	2880	same_strand	downstream	no
0	XLOC_340060	TCONS_00341157	LOC106047517	rna39249	sense	intergenic	2880	same_strand	downstream	no
1	XLOC_292923	TCONS_00293852	LOC106044084	rna33171	sense	intergenic	28158	same_strand	upstream	no
1	XLOC_057708	TCONS_00057883	LOC106030637	rna6205	antisense	intergenic	1422	divergent	upstream	no
1	XLOC_265498	TCONS_00266347	LOC106042557	rna30111	sense	intergenic	10899	same_strand	upstream	no
0	XLOC_265498	TCONS_00266347	LOC106042560	rna30112	antisense	intergenic	14060	divergent	upstream	no
1	XLOC_057562	TCONS_00057735	LOC106030657	rna6174	antisense	intergenic	27240	convergent	downstream	no
1	XLOC_231960	TCONS_00232685	ARHGAP32	rna26305	antisense	genic	0	nested	intronic	no
0	XLOC_231960	TCONS_00232685	ARHGAP32	rna26300	antisense	genic	0	nested	intronic	no
0	XLOC_231960	TCONS_00232685	ARHGAP32	rna26301	antisense	genic	0	nested	intronic	no
0	XLOC_231960	TCONS_00232685	ARHGAP32	rna26303	antisense	genic	0	nested	intronic	no
0	XLOC_231960	TCONS_00232685	ARHGAP32	rna26307	antisense	genic	0	nested	intronic	no
0	XLOC_231960	TCONS_00232685	ARHGAP32	rna26302	antisense	genic	0	nested	intronic	no
0	XLOC_231960	TCONS_00232685	ARHGAP32	rna26304	antisense	genic	0	nested	intronic	no
0	XLOC_231960	TCONS_00232685	ARHGAP32	rna26306	antisense	genic	0	nested	intronic	no
1	XLOC_206090	TCONS_00206758	FAM110B	rna23035	sense	genic	0	nested	intronic	no
0	XLOC_206090	TCONS_00206758	FAM110B	rna23036	sense	genic	0	nested	intronic	no
0	XLOC_206090	TCONS_00206758	FAM110B	rna23037	sense	genic	0	nested	intronic	no
1	XLOC_080387	TCONS_00080630	SLF2	rna8609	sense	intergenic	2301	same_strand	upstream	no
0	XLOC_080387	TCONS_00080630	SLF2	rna8610	sense	intergenic	7144	same_strand	upstream	no
1	XLOC_314547	TCONS_00315550	NTRK2	rna35369	sense	genic	0	nested	intronic	no
0	XLOC_314547	TCONS_00315550	NTRK2	rna35368	sense	genic	0	nested	intronic	no
1	XLOC_172694	TCONS_00173248	EHMT1	rna19163	sense	genic	0	nested	intronic	no
0	XLOC_172694	TCONS_00173248	EHMT1	rna19165	sense	intergenic	114	same_strand	upstream	no
0	XLOC_172694	TCONS_00173248	ARRDC1	rna19179	sense	intergenic	8358	same_strand	downstream	no
0	XLOC_172694	TCONS_00173248	EHMT1	rna19164	sense	intergenic	114	same_strand	upstream	no
0	XLOC_172694	TCONS_00173248	EHMT1	rna19166	sense	intergenic	7349	same_strand	upstream	no
1	XLOC_314279	TCONS_00315282	GKAP1	rna35389	sense	intergenic	5817	same_strand	downstream	yes
0	XLOC_314279	TCONS_00315282	GKAP1	rna35388	sense	intergenic	5817	same_strand	downstream	yes
0	XLOC_314279	TCONS_00315282	GKAP1	rna35387	sense	intergenic	5817	same_strand	downstream	yes
0	XLOC_314279	TCONS_00315282	UBQLN1	rna35390	sense	intergenic	6372	same_strand	upstream	no
0	XLOC_314279	TCONS_00315282	GKAP1	rna35386	sense	intergenic	5817	same_strand	downstream	yes
1	XLOC_117556	TCONS_00117927	FBXO38	rna13739	sense	intergenic	587	same_strand	upstream	no
0	XLOC_117556	TCONS_00117927	FBXO38	rna13741	sense	intergenic	587	same_strand	upstream	no
0	XLOC_117556	TCONS_00117927	FBXO38	rna13738	sense	intergenic	587	same_strand	upstream	no
0	XLOC_117556	TCONS_00117927	FBXO38	rna13740	sense	intergenic	587	same_strand	upstream	no
0	XLOC_117556	TCONS_00117927	FBXO38	rna13742	sense	intergenic	3091	same_strand	upstream	no
1	XLOC_148656	TCONS_00149131	SYN3	rna16702	sense	genic	0	nested	intronic	no
0	XLOC_148656	TCONS_00149131	SYN3	rna16701	sense	genic	0	nested	intronic	no
1	XLOC_243009	TCONS_00243788	SLC41A1	rna27797	sense	intergenic	765	same_strand	upstream	yes
0	XLOC_243009	TCONS_00243788	PM20D1	rna27796	sense	intergenic	3677	same_strand	downstream	no
1	XLOC_067262	TCONS_00067463	LOC106030951	rna6906	antisense	intergenic	2609	divergent	upstream	no
1	XLOC_053441	TCONS_00053606	CSMD1	rna5980	antisense	genic	0	nested	intronic	no
1	XLOC_289328	TCONS_00290251	CYTIP	rna32656	sense	genic	0	nested	intronic	no
1	XLOC_317450	TCONS_00318457	UGP2	rna35851	sense	intergenic	7181	same_strand	upstream	no
1	XLOC_165674	TCONS_00166209	CTDSPL	rna18713	sense	intergenic	4519	same_strand	downstream	no
0	XLOC_165674	TCONS_00166209	CTDSPL	rna18714	sense	intergenic	4520	same_strand	downstream	no
0	XLOC_165674	TCONS_00166209	CTDSPL	rna18711	sense	intergenic	4520	same_strand	downstream	no
0	XLOC_165674	TCONS_00166209	CTDSPL	rna18712	sense	intergenic	4520	same_strand	downstream	no
1	XLOC_334210	TCONS_00335277	APOPT1	rna38254	sense	intergenic	1597	same_strand	downstream	no
1	XLOC_212978	TCONS_00213662	PDE10A	rna24087	sense	genic	0	nested	intronic	no
1	XLOC_158023	TCONS_00158538	IGF1R	rna17905	antisense	intergenic	23954	divergent	upstream	no
1	XLOC_293085	TCONS_00294016	LOC106044137	rna33167	antisense	intergenic	30276	convergent	downstream	no
1	XLOC_096425	TCONS_00096727	CPLX2	rna10654	antisense	genic	0	nested	intronic	no
0	XLOC_096425	TCONS_00096727	HRH2	rna10652	antisense	intergenic	8841	convergent	downstream	no
0	XLOC_096425	TCONS_00096727	HRH2	rna10651	antisense	intergenic	8841	convergent	downstream	no
0	XLOC_096425	TCONS_00096727	LOC106032872	rna10653	sense	intergenic	7994	same_strand	upstream	no
1	XLOC_117536	TCONS_00117919	IL12B	rna13735	sense	intergenic	17	same_strand	upstream	no
1	XLOC_071414	TCONS_00071624	LOC106031476	rna7868	sense	intergenic	17184	same_strand	downstream	no
1	XLOC_192096	TCONS_00192710	LOC106038356	rna21682	antisense	intergenic	1840	divergent	upstream	no
0	XLOC_192096	TCONS_00192710	LOC106038377	rna21680	antisense	intergenic	7630	convergent	downstream	no
0	XLOC_192096	TCONS_00192710	LOC106038356	rna21683	antisense	intergenic	1842	divergent	upstream	no
0	XLOC_192096	TCONS_00192710	LOC106038357	rna21684	antisense	intergenic	1871	divergent	upstream	no
0	XLOC_192096	TCONS_00192710	LOC106038377	rna21681	antisense	intergenic	7630	convergent	downstream	no
1	XLOC_355165	TCONS_00356331	WNT4	rna41792	antisense	intergenic	28	convergent	downstream	no
1	XLOC_083929	TCONS_00084186	ZNF598	rna9297	sense	genic	0	nested	intronic	no
1	XLOC_194467	TCONS_00195087	TMEM65	rna21914	sense	genic	0	nested	intronic	no
0	XLOC_194467	TCONS_00195087	TMEM65	rna21913	sense	genic	0	nested	intronic	no
1	XLOC_352146	TCONS_00353284	LOC106048752	rna41239	antisense	intergenic	7492	convergent	downstream	yes
1	XLOC_103030	TCONS_00103367	COQ7	rna11643	sense	intergenic	2665	same_strand	downstream	no
0	XLOC_103030	TCONS_00103367	SYT17	rna11640	sense	intergenic	9635	same_strand	upstream	no
0	XLOC_103030	TCONS_00103367	COQ7	rna11642	sense	intergenic	2665	same_strand	downstream	no
0	XLOC_103030	TCONS_00103367	TMC7	rna11644	sense	intergenic	7648	same_strand	downstream	no
1	XLOC_182250	TCONS_00182844	KCTD1	rna20153	sense	genic	0	nested	intronic	no
0	XLOC_182250	TCONS_00182844	KCTD1	rna20154	sense	intergenic	4554	same_strand	upstream	no
1	XLOC_232890	TCONS_00233616	UBAC1	rna26512	sense	intergenic	538	same_strand	downstream	no
0	XLOC_232890	TCONS_00233616	CAMSAP1	rna26513	sense	intergenic	4961	same_strand	upstream	no
1	XLOC_078439	TCONS_00078670	FARP1	rna8536	sense	genic	0	nested	intronic	yes
0	XLOC_078439	TCONS_00078670	FARP1	rna8537	sense	genic	0	nested	intronic	yes
0	XLOC_078439	TCONS_00078670	FARP1	rna8538	sense	genic	0	nested	intronic	yes
0	XLOC_078439	TCONS_00078670	FARP1	rna8540	sense	genic	0	nested	intronic	yes
0	XLOC_078439	TCONS_00078670	FARP1	rna8539	sense	genic	0	nested	intronic	yes
0	XLOC_078439	TCONS_00078670	FARP1	rna8541	sense	genic	0	nested	intronic	yes
1	XLOC_010718	TCONS_00010745	GSC	rna1731	sense	genic	0	nested	intronic	no
1	XLOC_151707	TCONS_00152195	LOC106036046	rna17087	antisense	intergenic	5500	divergent	upstream	no
0	XLOC_151707	TCONS_00152195	LOC106036046	rna17085	antisense	intergenic	5500	divergent	upstream	no
1	XLOC_138974	TCONS_00139410	THOC7	rna15940	antisense	intergenic	7492	divergent	upstream	no
1	XLOC_020430	TCONS_00020495	SENP7	rna2162	sense	genic	0	nested	intronic	no
0	XLOC_020430	TCONS_00020495	LOC106038723	rna2170	antisense	intergenic	1864	divergent	upstream	no
0	XLOC_020430	TCONS_00020495	SENP7	rna2169	sense	genic	0	nested	intronic	no
0	XLOC_020430	TCONS_00020495	LOC106038723	rna2171	antisense	intergenic	2098	divergent	upstream	no
0	XLOC_020430	TCONS_00020495	TRMT10C	rna2173	antisense	intergenic	8404	divergent	upstream	no
0	XLOC_020430	TCONS_00020495	SENP7	rna2163	sense	genic	0	nested	intronic	no
0	XLOC_020430	TCONS_00020495	SENP7	rna2167	sense	genic	0	nested	intronic	no
0	XLOC_020430	TCONS_00020495	SENP7	rna2168	sense	genic	0	nested	intronic	no
0	XLOC_020430	TCONS_00020495	SENP7	rna2165	sense	genic	0	nested	intronic	no
0	XLOC_020430	TCONS_00020495	SENP7	rna2166	sense	genic	0	nested	intronic	no
0	XLOC_020430	TCONS_00020495	SENP7	rna2164	sense	genic	0	nested	intronic	no
0	XLOC_020430	TCONS_00020495	TRMT10C	rna2175	antisense	intergenic	9674	divergent	upstream	no
0	XLOC_020430	TCONS_00020495	TRMT10C	rna2174	antisense	intergenic	9231	divergent	upstream	no
0	XLOC_020430	TCONS_00020495	TXNL4B	rna2172	sense	intergenic	5851	same_strand	downstream	no
1	XLOC_098310	TCONS_00098625	GLIS1	rna10788	antisense	genic	0	nested	intronic	no
0	XLOC_098310	TCONS_00098625	GLIS1	rna10789	antisense	genic	0	nested	intronic	no
0	XLOC_098310	TCONS_00098625	GLIS1	rna10787	antisense	genic	0	nested	intronic	no
0	XLOC_098310	TCONS_00098625	GLIS1	rna10790	antisense	genic	0	nested	intronic	no
1	XLOC_123061	TCONS_00123448	TNRC6C	rna14623	sense	intergenic	3862	same_strand	upstream	no
0	XLOC_123061	TCONS_00123448	LOC106034704	rna14624	sense	intergenic	7898	same_strand	downstream	no
1	XLOC_343051	TCONS_00344157	RACGAP1	rna39571	antisense	intergenic	4164	convergent	downstream	yes
0	XLOC_343051	TCONS_00344157	LOC106047726	rna39570	antisense	intergenic	9426	divergent	upstream	no
0	XLOC_343051	TCONS_00344157	RACGAP1	rna39572	antisense	intergenic	4164	convergent	downstream	yes
1	XLOC_304056	TCONS_00305036	LOC106044793	rna34384	antisense	genic	0	nested	intronic	no
1	XLOC_287731	TCONS_00288647	RAP1GAP2	rna32433	sense	intergenic	19390	same_strand	downstream	no
1	XLOC_224919	TCONS_00225625	SPINK4	rna25627	sense	intergenic	5148	same_strand	upstream	no
1	XLOC_199514	TCONS_00200147	LOC106038726	rna22483	sense	genic	0	nested	intronic	yes
0	XLOC_199514	TCONS_00200147	LOC106038726	rna22473	sense	genic	0	nested	intronic	yes
0	XLOC_199514	TCONS_00200147	LOC106038726	rna22482	sense	genic	0	nested	intronic	yes
0	XLOC_199514	TCONS_00200147	LOC106038726	rna22471	sense	genic	0	nested	intronic	yes
0	XLOC_199514	TCONS_00200147	LOC106038726	rna22489	sense	genic	0	nested	intronic	yes
0	XLOC_199514	TCONS_00200147	LOC106038726	rna22476	sense	genic	0	nested	intronic	yes
0	XLOC_199514	TCONS_00200147	LOC106038726	rna22472	sense	genic	0	nested	intronic	yes
0	XLOC_199514	TCONS_00200147	LOC106038726	rna22480	sense	genic	0	nested	intronic	yes
0	XLOC_199514	TCONS_00200147	LOC106038726	rna22481	sense	genic	0	nested	intronic	yes
0	XLOC_199514	TCONS_00200147	LOC106038726	rna22488	sense	genic	0	nested	intronic	yes
0	XLOC_199514	TCONS_00200147	LOC106038726	rna22474	sense	genic	0	nested	intronic	yes
0	XLOC_199514	TCONS_00200147	LOC106038726	rna22475	sense	genic	0	nested	intronic	yes
0	XLOC_199514	TCONS_00200147	LOC106038726	rna22477	sense	genic	0	nested	intronic	yes
0	XLOC_199514	TCONS_00200147	LOC106038726	rna22479	sense	genic	0	nested	intronic	yes
0	XLOC_199514	TCONS_00200147	LOC106038727	rna22487	antisense	intergenic	9177	divergent	upstream	no
0	XLOC_199514	TCONS_00200147	LOC106038726	rna22484	sense	genic	0	nested	intronic	yes
0	XLOC_199514	TCONS_00200147	LOC106038726	rna22478	sense	genic	0	nested	intronic	yes
0	XLOC_199514	TCONS_00200147	LOC106038726	rna22486	sense	genic	0	nested	intronic	yes
0	XLOC_199514	TCONS_00200147	LOC106038726	rna22485	sense	genic	0	nested	intronic	yes
1	XLOC_239910	TCONS_00240679	KL	rna27422	sense	intergenic	13890	same_strand	upstream	no
1	XLOC_086912	TCONS_00087183	LOC106032384	rna9635	antisense	intergenic	6224	divergent	upstream	no
1	XLOC_151588	TCONS_00152073	LOC106036066	rna17055	sense	intergenic	72217	same_strand	downstream	no
1	XLOC_024347	TCONS_00024421	RGS6	rna2941	sense	genic	0	nested	intronic	no
0	XLOC_024347	TCONS_00024421	RGS6	rna2938	sense	genic	0	nested	intronic	no
0	XLOC_024347	TCONS_00024421	RGS6	rna2940	sense	genic	0	nested	intronic	no
0	XLOC_024347	TCONS_00024421	RGS6	rna2937	sense	genic	0	nested	intronic	no
0	XLOC_024347	TCONS_00024421	RGS6	rna2936	sense	genic	0	nested	intronic	no
1	XLOC_094988	TCONS_00095284	GALNT10	rna10550	sense	genic	0	nested	intronic	no
1	XLOC_221911	TCONS_00222610	PLCL1	rna25090	sense	intergenic	18672	same_strand	downstream	yes
1	XLOC_079569	TCONS_00079813	TCF7L2	rna8744	sense	intergenic	38318	same_strand	upstream	no
1	XLOC_319275	TCONS_00320298	LOC106045901	rna36353	sense	intergenic	28886	same_strand	downstream	no
1	XLOC_047184	TCONS_00047331	LOC106030194	rna5370	sense	intergenic	18504	same_strand	downstream	no
1	XLOC_166945	TCONS_00167487	LOC106036829	rna18796	sense	intergenic	528	same_strand	upstream	yes
0	XLOC_166945	TCONS_00167487	LOC106036829	rna18797	sense	intergenic	528	same_strand	upstream	yes
0	XLOC_166945	TCONS_00167487	LOC106036829	rna18800	sense	intergenic	528	same_strand	upstream	yes
0	XLOC_166945	TCONS_00167487	LOC106036829	rna18795	sense	intergenic	528	same_strand	upstream	yes
0	XLOC_166945	TCONS_00167487	LOC106036829	rna18793	sense	intergenic	528	same_strand	upstream	yes
0	XLOC_166945	TCONS_00167487	LOC106036829	rna18794	sense	intergenic	528	same_strand	upstream	yes
0	XLOC_166945	TCONS_00167487	LOC106036829	rna18799	sense	intergenic	528	same_strand	upstream	yes
0	XLOC_166945	TCONS_00167487	LOC106036829	rna18798	sense	intergenic	528	same_strand	upstream	yes
1	XLOC_140164	TCONS_00140608	MAGI1	rna15970	sense	genic	0	nested	intronic	no
0	XLOC_140164	TCONS_00140608	MAGI1	rna15971	sense	genic	0	nested	intronic	no
0	XLOC_140164	TCONS_00140608	MAGI1	rna15963	sense	genic	0	nested	intronic	no
0	XLOC_140164	TCONS_00140608	MAGI1	rna15969	sense	genic	0	nested	intronic	no
0	XLOC_140164	TCONS_00140608	MAGI1	rna15964	sense	genic	0	nested	intronic	no
0	XLOC_140164	TCONS_00140608	MAGI1	rna15972	sense	genic	0	nested	intronic	no
0	XLOC_140164	TCONS_00140608	MAGI1	rna15967	sense	genic	0	nested	intronic	no
0	XLOC_140164	TCONS_00140608	MAGI1	rna15966	sense	genic	0	nested	intronic	no
0	XLOC_140164	TCONS_00140608	MAGI1	rna15968	sense	genic	0	nested	intronic	no
0	XLOC_140164	TCONS_00140608	MAGI1	rna15973	sense	genic	0	nested	intronic	no
0	XLOC_140164	TCONS_00140608	MAGI1	rna15962	sense	genic	0	nested	intronic	no
0	XLOC_140164	TCONS_00140608	MAGI1	rna15965	sense	genic	0	nested	intronic	no
1	XLOC_017561	TCONS_00017624	ABHD10	rna2285	sense	intergenic	263	same_strand	downstream	no
0	XLOC_017561	TCONS_00017624	TAGLN3	rna2288	sense	intergenic	917	same_strand	upstream	yes
0	XLOC_017561	TCONS_00017624	PHLDB2	rna2283	sense	intergenic	9790	same_strand	downstream	no
0	XLOC_017561	TCONS_00017624	ABHD10	rna2286	sense	intergenic	263	same_strand	downstream	no
0	XLOC_017561	TCONS_00017624	TAGLN3	rna2287	sense	intergenic	911	same_strand	upstream	yes
1	XLOC_205809	TCONS_00206476	RP1	rna22981	sense	intergenic	54674	same_strand	upstream	no
1	XLOC_080386	TCONS_00080629	SLF2	rna8609	sense	intergenic	431	same_strand	downstream	no
0	XLOC_080386	TCONS_00080629	SLF2	rna8610	sense	intergenic	431	same_strand	downstream	no
1	XLOC_157314	TCONS_00157829	LOC106036462	rna17790	antisense	genic	0	nested	intronic	no
0	XLOC_157314	TCONS_00157829	LOC106036462	rna17787	antisense	genic	0	nested	intronic	no
0	XLOC_157314	TCONS_00157829	LOC106036462	rna17788	antisense	genic	0	nested	intronic	no
0	XLOC_157314	TCONS_00157829	LOC106036462	rna17792	antisense	genic	0	nested	intronic	no
0	XLOC_157314	TCONS_00157829	LOC106036462	rna17791	antisense	genic	0	nested	intronic	no
0	XLOC_157314	TCONS_00157829	LOC106036462	rna17789	antisense	genic	0	nested	intronic	no
1	XLOC_180010	TCONS_00180594	ETV1	rna19980	antisense	intergenic	97971	convergent	downstream	no
0	XLOC_180010	TCONS_00180594	ETV1	rna19982	antisense	intergenic	97971	convergent	downstream	no
0	XLOC_180010	TCONS_00180594	ETV1	rna19981	antisense	intergenic	97971	convergent	downstream	no
0	XLOC_180010	TCONS_00180594	ETV1	rna19983	antisense	intergenic	97971	convergent	downstream	no
1	XLOC_194261	TCONS_00194878	LOC106038463	rna21895	antisense	intergenic	80730	convergent	downstream	no
1	XLOC_219066	TCONS_00219764	EED	rna24812	antisense	intergenic	18002	divergent	upstream	no
1	XLOC_084057	TCONS_00084314	TTC29	rna9369	antisense	genic	0	nested	intronic	no
0	XLOC_084057	TCONS_00084314	TTC29	rna9374	antisense	genic	0	nested	intronic	no
0	XLOC_084057	TCONS_00084314	TTC29	rna9364	antisense	genic	0	nested	intronic	no
0	XLOC_084057	TCONS_00084314	TTC29	rna9366	antisense	genic	0	nested	intronic	no
0	XLOC_084057	TCONS_00084314	TTC29	rna9372	antisense	genic	0	nested	intronic	no
0	XLOC_084057	TCONS_00084314	TTC29	rna9368	antisense	genic	0	nested	intronic	no
0	XLOC_084057	TCONS_00084314	TTC29	rna9363	antisense	genic	0	nested	intronic	no
0	XLOC_084057	TCONS_00084314	TTC29	rna9361	antisense	genic	0	nested	intronic	no
0	XLOC_084057	TCONS_00084314	TTC29	rna9365	antisense	genic	0	nested	intronic	no
0	XLOC_084057	TCONS_00084314	TTC29	rna9370	antisense	intergenic	507	divergent	upstream	no
0	XLOC_084057	TCONS_00084314	TTC29	rna9362	antisense	genic	0	nested	intronic	no
0	XLOC_084057	TCONS_00084314	TTC29	rna9367	antisense	genic	0	nested	intronic	no
0	XLOC_084057	TCONS_00084314	TTC29	rna9371	antisense	genic	0	nested	intronic	no
1	XLOC_281732	TCONS_00282631	LOC106043472	rna31863	antisense	intergenic	7698	convergent	downstream	no
1	XLOC_259684	TCONS_00260512	CD93	rna29497	antisense	intergenic	1648	divergent	upstream	no
0	XLOC_259684	TCONS_00260512	LOC106042275	rna29498	sense	intergenic	7252	same_strand	upstream	no
1	XLOC_094405	TCONS_00094701	ACSL6	rna10295	sense	intergenic	6324	same_strand	upstream	no
0	XLOC_094405	TCONS_00094701	LOC106032908	rna10291	sense	intergenic	9152	same_strand	downstream	no
0	XLOC_094405	TCONS_00094701	ACSL6	rna10294	sense	intergenic	6324	same_strand	upstream	no
0	XLOC_094405	TCONS_00094701	ACSL6	rna10293	sense	intergenic	6324	same_strand	upstream	no
1	XLOC_352257	TCONS_00353399	BSN	rna41274	sense	intergenic	3094	same_strand	upstream	no
0	XLOC_352257	TCONS_00353399	TRAIP	rna41275	sense	intergenic	7932	same_strand	downstream	no
1	XLOC_168405	TCONS_00168951	CRADD	rna18868	antisense	genic	0	nested	intronic	no
1	XLOC_344251	TCONS_00345362	DIO3	rna39742	sense	intergenic	62155	same_strand	downstream	no
1	XLOC_012740	TCONS_00012778	SH3TC1	rna1345	sense	intergenic	826	same_strand	downstream	yes
0	XLOC_012740	TCONS_00012778	SH3TC1	rna1340	sense	intergenic	826	same_strand	downstream	yes
0	XLOC_012740	TCONS_00012778	SH3TC1	rna1342	sense	intergenic	826	same_strand	downstream	yes
0	XLOC_012740	TCONS_00012778	SH3TC1	rna1343	sense	intergenic	826	same_strand	downstream	yes
0	XLOC_012740	TCONS_00012778	SH3TC1	rna1344	sense	intergenic	826	same_strand	downstream	yes
0	XLOC_012740	TCONS_00012778	SH3TC1	rna1341	sense	intergenic	826	same_strand	downstream	yes
1	XLOC_310639	TCONS_00311631	CTXN3	rna35102	sense	intergenic	822	same_strand	downstream	no
0	XLOC_310639	TCONS_00311631	CTXN3	rna35096	sense	intergenic	822	same_strand	downstream	no
0	XLOC_310639	TCONS_00311631	CTXN3	rna35098	sense	intergenic	822	same_strand	downstream	no
0	XLOC_310639	TCONS_00311631	CTXN3	rna35104	sense	intergenic	822	same_strand	downstream	no
0	XLOC_310639	TCONS_00311631	CTXN3	rna35100	sense	intergenic	822	same_strand	downstream	no
0	XLOC_310639	TCONS_00311631	CTXN3	rna35099	sense	intergenic	822	same_strand	downstream	no
0	XLOC_310639	TCONS_00311631	CTXN3	rna35095	sense	intergenic	822	same_strand	downstream	no
0	XLOC_310639	TCONS_00311631	CTXN3	rna35097	sense	intergenic	822	same_strand	downstream	no
0	XLOC_310639	TCONS_00311631	CTXN3	rna35101	sense	intergenic	822	same_strand	downstream	no
0	XLOC_310639	TCONS_00311631	CTXN3	rna35103	sense	intergenic	822	same_strand	downstream	no
1	XLOC_251988	TCONS_00252791	ABCG2	rna28849	antisense	intergenic	930	convergent	downstream	no
0	XLOC_251988	TCONS_00252791	PKD2	rna28845	sense	intergenic	4847	same_strand	downstream	no
0	XLOC_251988	TCONS_00252791	PKD2	rna28846	sense	intergenic	4847	same_strand	downstream	no
0	XLOC_251988	TCONS_00252791	PKD2	rna28847	sense	intergenic	4846	same_strand	downstream	no
0	XLOC_251988	TCONS_00252791	PKD2	rna28848	sense	intergenic	2339	same_strand	downstream	no
1	XLOC_091181	TCONS_00091469	SESN1	rna10047	sense	intergenic	21358	same_strand	upstream	no
0	XLOC_091181	TCONS_00091469	SESN1	rna10049	sense	intergenic	26249	same_strand	upstream	no
0	XLOC_091181	TCONS_00091469	SESN1	rna10048	sense	intergenic	26122	same_strand	upstream	no
0	XLOC_091181	TCONS_00091469	CEP57L1	rna10038	antisense	intergenic	23546	divergent	upstream	no
0	XLOC_091181	TCONS_00091469	SESN1	rna10050	sense	intergenic	26594	same_strand	upstream	no
1	XLOC_308621	TCONS_00309609	TMEM200B	rna34942	sense	intergenic	5111	same_strand	upstream	no
1	XLOC_030180	TCONS_00030273	CPM	rna3780	sense	genic	0	nested	intronic	yes
1	XLOC_307374	TCONS_00308359	SLC6A6	rna34781	sense	genic	0	nested	intronic	yes
0	XLOC_307374	TCONS_00308359	SLC6A6	rna34780	sense	genic	0	nested	intronic	yes
0	XLOC_307374	TCONS_00308359	SLC6A6	rna34786	sense	genic	0	nested	intronic	yes
0	XLOC_307374	TCONS_00308359	SLC6A6	rna34782	sense	genic	0	nested	intronic	yes
0	XLOC_307374	TCONS_00308359	SLC6A6	rna34783	sense	genic	0	nested	intronic	yes
0	XLOC_307374	TCONS_00308359	SLC6A6	rna34785	sense	genic	0	nested	intronic	yes
0	XLOC_307374	TCONS_00308359	SLC6A6	rna34784	sense	genic	0	nested	intronic	yes
0	XLOC_307374	TCONS_00308359	SLC6A6	rna34787	sense	genic	0	nested	intronic	yes
1	XLOC_206158	TCONS_00206826	NSMAF	rna23046	antisense	intergenic	242	divergent	upstream	no
1	XLOC_122075	TCONS_00122457	LOC106034634	rna14631	antisense	genic	0	nested	intronic	no
1	XLOC_034965	TCONS_00035073	LOC106048539	rna4052	antisense	genic	0	nested	intronic	no
1	XLOC_209625	TCONS_00210299	TRA2B	rna23342	sense	genic	0	nested	intronic	no
0	XLOC_209625	TCONS_00210299	TRA2B	rna23343	sense	genic	0	nested	intronic	no
1	XLOC_353826	TCONS_00354975	TMEM40	rna41489	antisense	intergenic	245	divergent	upstream	no
0	XLOC_353826	TCONS_00354975	TMEM40	rna41488	antisense	intergenic	245	divergent	upstream	no
1	XLOC_021053	TCONS_00021122	PVRL3	rna2278	antisense	intergenic	22964	divergent	upstream	no
1	XLOC_257859	TCONS_00258683	PTP4A3	rna29387	sense	intergenic	319	same_strand	upstream	yes
1	XLOC_202072	TCONS_00202710	NKX2-1	rna22586	sense	intergenic	4246	same_strand	downstream	no
1	XLOC_135001	TCONS_00135420	PTDSS1	rna15516	antisense	intergenic	29257	convergent	downstream	no
0	XLOC_135001	TCONS_00135420	PTDSS1	rna15517	antisense	intergenic	29257	convergent	downstream	no
0	XLOC_135001	TCONS_00135420	PTDSS1	rna15515	antisense	intergenic	29257	convergent	downstream	no
1	XLOC_331416	TCONS_00332467	LOC106046649	rna37648	sense	intergenic	1220	same_strand	downstream	no
0	XLOC_331416	TCONS_00332467	NOD1	rna37643	antisense	intergenic	3002	convergent	downstream	no
0	XLOC_331416	TCONS_00332467	NOD1	rna37642	antisense	intergenic	3002	convergent	downstream	no
0	XLOC_331416	TCONS_00332467	NOD1	rna37644	antisense	intergenic	3002	convergent	downstream	no
0	XLOC_331416	TCONS_00332467	LOC106046649	rna37649	sense	intergenic	1220	same_strand	downstream	no
1	XLOC_148268	TCONS_00148742	SGSM3	rna16890	sense	genic	0	nested	intronic	no
0	XLOC_148268	TCONS_00148742	ADSL	rna16889	sense	intergenic	3580	same_strand	downstream	no
1	XLOC_243406	TCONS_00244188	INPP5K	rna27887	sense	intergenic	2734	same_strand	downstream	no
0	XLOC_243406	TCONS_00244188	MYO1C	rna27888	sense	intergenic	5952	same_strand	upstream	no
1	XLOC_307738	TCONS_00308724	GADD45G	rna34863	sense	intergenic	1103	same_strand	downstream	no
0	XLOC_307738	TCONS_00308724	LOC106045081	rna34861	sense	intergenic	3108	same_strand	downstream	no
0	XLOC_307738	TCONS_00308724	LOC106045081	rna34862	sense	intergenic	3108	same_strand	downstream	no
1	XLOC_261479	TCONS_00262308	LOC106042349	rna29646	antisense	intergenic	747	divergent	upstream	no
0	XLOC_261479	TCONS_00262308	LOC106042349	rna29645	antisense	intergenic	747	divergent	upstream	no
1	XLOC_291091	TCONS_00292018	LOC106043991	rna32828	antisense	intergenic	10278	convergent	downstream	no
0	XLOC_291091	TCONS_00292018	LOC106043991	rna32826	antisense	intergenic	10278	convergent	downstream	no
0	XLOC_291091	TCONS_00292018	LOC106043991	rna32827	antisense	intergenic	10278	convergent	downstream	no
1	XLOC_029669	TCONS_00029762	CAPS2	rna3715	sense	intergenic	534	same_strand	upstream	no
0	XLOC_029669	TCONS_00029762	CAPS2	rna3714	sense	intergenic	534	same_strand	upstream	no
0	XLOC_029669	TCONS_00029762	CAPS2	rna3719	sense	intergenic	1172	same_strand	upstream	no
0	XLOC_029669	TCONS_00029762	CCDC107	rna3713	sense	intergenic	1393	same_strand	downstream	no
0	XLOC_029669	TCONS_00029762	LOC106046657	rna3710	antisense	intergenic	6108	divergent	upstream	no
0	XLOC_029669	TCONS_00029762	CAPS2	rna3716	sense	intergenic	701	same_strand	upstream	no
0	XLOC_029669	TCONS_00029762	LOC106046657	rna3711	antisense	intergenic	6109	divergent	upstream	no
0	XLOC_029669	TCONS_00029762	CCDC107	rna3712	sense	intergenic	1393	same_strand	downstream	no
0	XLOC_029669	TCONS_00029762	CAPS2	rna3718	sense	intergenic	1161	same_strand	upstream	no
0	XLOC_029669	TCONS_00029762	CAPS2	rna3717	sense	intergenic	728	same_strand	upstream	no
1	XLOC_079569	TCONS_00079804	VTI1A	rna8743	sense	intergenic	16453	same_strand	downstream	no
1	XLOC_282073	TCONS_00282972	LOC106043475	rna31862	antisense	intergenic	6629	convergent	downstream	no
1	XLOC_055268	TCONS_00055434	HEY1	rna6201	sense	intergenic	1704	same_strand	downstream	yes
0	XLOC_055268	TCONS_00055434	LOC106030660	rna6200	sense	intergenic	8185	same_strand	downstream	no
1	XLOC_253365	TCONS_00254175	CAMSAP2	rna29014	sense	genic	0	nested	intronic	yes
1	XLOC_152744	TCONS_00153236	AGPAT3	rna17104	sense	genic	0	nested	intronic	no
0	XLOC_152744	TCONS_00153236	LOC106036095	rna17106	antisense	intergenic	1550	divergent	upstream	no
0	XLOC_152744	TCONS_00153236	LOC106036094	rna17107	sense	intergenic	9340	same_strand	downstream	no
1	XLOC_172694	TCONS_00173247	EHMT1	rna19163	sense	genic	0	nested	intronic	no
0	XLOC_172694	TCONS_00173247	EHMT1	rna19165	sense	intergenic	114	same_strand	upstream	no
0	XLOC_172694	TCONS_00173247	EHMT1	rna19164	sense	intergenic	114	same_strand	upstream	no
0	XLOC_172694	TCONS_00173247	EHMT1	rna19166	sense	intergenic	7349	same_strand	upstream	no
1	XLOC_358706	TCONS_00359885	PSMC4	rna43073	sense	genic	0	nested	intronic	no
1	XLOC_076288	TCONS_00076514	NPAS3	rna8455	sense	intergenic	7049	same_strand	downstream	no
1	XLOC_009288	TCONS_00009314	TAPT1	rna1505	antisense	intergenic	4168	divergent	upstream	yes
0	XLOC_009288	TCONS_00009314	TAPT1	rna1506	antisense	intergenic	4171	divergent	upstream	yes
0	XLOC_009288	TCONS_00009314	TAPT1	rna1511	antisense	intergenic	9874	divergent	upstream	yes
0	XLOC_009288	TCONS_00009314	TAPT1	rna1508	antisense	intergenic	5671	divergent	upstream	yes
0	XLOC_009288	TCONS_00009314	TAPT1	rna1509	antisense	intergenic	5673	divergent	upstream	yes
0	XLOC_009288	TCONS_00009314	TAPT1	rna1510	antisense	intergenic	9874	divergent	upstream	yes
0	XLOC_009288	TCONS_00009314	TAPT1	rna1507	antisense	intergenic	5657	divergent	upstream	yes
1	XLOC_235201	TCONS_00235948	PDE3B	rna26995	sense	genic	0	nested	intronic	no
1	XLOC_278247	TCONS_00279138	LOC106043278	rna31460	sense	genic	0	nested	intronic	no
0	XLOC_278247	TCONS_00279138	LOC106043276	rna31462	sense	intergenic	72	same_strand	upstream	no
0	XLOC_278247	TCONS_00279138	LOC106043277	rna31461	sense	intergenic	5403	same_strand	upstream	no
1	XLOC_343753	TCONS_00344864	ZNF648	rna39698	sense	intergenic	2676	same_strand	downstream	no
1	XLOC_082349	TCONS_00082596	RNF216	rna9148	antisense	genic	0	nested	intronic	no
0	XLOC_082349	TCONS_00082596	RNF216	rna9149	antisense	genic	0	nested	intronic	no
1	XLOC_189487	TCONS_00190092	ATXN10	rna21519	sense	intergenic	5446	same_strand	downstream	no
0	XLOC_189487	TCONS_00190092	ATXN10	rna21517	sense	intergenic	5446	same_strand	downstream	no
1	XLOC_295369	TCONS_00296306	RERE	rna33444	sense	intergenic	11225	same_strand	upstream	no
1	XLOC_352881	TCONS_00354025	PCSK1	rna41370	antisense	genic	0	nested	intronic	no
1	XLOC_136489	TCONS_00136916	LOC106035358	rna15775	sense	intergenic	32570	same_strand	upstream	no
0	XLOC_136489	TCONS_00136916	LOC106035389	rna15774	antisense	intergenic	38597	divergent	upstream	no
0	XLOC_136489	TCONS_00136916	AKIRIN2	rna15773	antisense	intergenic	38198	divergent	upstream	no
1	XLOC_229832	TCONS_00230555	LOC106040461	rna26059	antisense	intergenic	3630	convergent	downstream	no
0	XLOC_229832	TCONS_00230555	LOC106040468	rna26060	antisense	intergenic	4750	divergent	upstream	no
1	XLOC_089202	TCONS_00089481	SMPDL3A	rna9741	antisense	intergenic	8928	convergent	downstream	yes
1	XLOC_257859	TCONS_00258684	PTP4A3	rna29387	sense	intergenic	319	same_strand	upstream	yes
1	XLOC_346546	TCONS_00347663	LOC106048113	rna40256	sense	intergenic	5203	same_strand	upstream	no
1	XLOC_233930	TCONS_00234670	RBBP8NL	rna26779	sense	intergenic	4313	same_strand	downstream	no
0	XLOC_233930	TCONS_00234670	CABLES2	rna26780	sense	intergenic	6715	same_strand	upstream	no
1	XLOC_318465	TCONS_00319481	PIGL	rna36180	antisense	genic	0	nested	intronic	no
1	XLOC_173124	TCONS_00173680	KCNH5	rna19429	antisense	intergenic	25064	convergent	downstream	no
0	XLOC_173124	TCONS_00173680	KCNH5	rna19430	antisense	intergenic	25064	convergent	downstream	no
1	XLOC_036312	TCONS_00036423	CRIM1	rna4326	sense	genic	0	nested	intronic	yes
1	XLOC_339932	TCONS_00341028	ARHGEF9	rna39168	antisense	genic	0	nested	intronic	no
0	XLOC_339932	TCONS_00341028	ARHGEF9	rna39170	antisense	intergenic	1899	divergent	upstream	no
0	XLOC_339932	TCONS_00341028	ARHGEF9	rna39172	antisense	intergenic	4611	divergent	upstream	no
0	XLOC_339932	TCONS_00341028	ARHGEF9	rna39165	antisense	genic	0	nested	intronic	no
0	XLOC_339932	TCONS_00341028	ARHGEF9	rna39164	antisense	genic	0	nested	intronic	no
0	XLOC_339932	TCONS_00341028	ARHGEF9	rna39167	antisense	genic	0	nested	intronic	no
0	XLOC_339932	TCONS_00341028	ARHGEF9	rna39169	antisense	intergenic	44	divergent	upstream	no
0	XLOC_339932	TCONS_00341028	ARHGEF9	rna39163	antisense	genic	0	nested	intronic	no
0	XLOC_339932	TCONS_00341028	ARHGEF9	rna39161	antisense	genic	0	nested	intronic	no
0	XLOC_339932	TCONS_00341028	ARHGEF9	rna39171	antisense	intergenic	3682	divergent	upstream	no
0	XLOC_339932	TCONS_00341028	ARHGEF9	rna39166	antisense	genic	0	nested	intronic	no
0	XLOC_339932	TCONS_00341028	ARHGEF9	rna39162	antisense	genic	0	nested	intronic	no
1	XLOC_166561	TCONS_00167098	GARS	rna18708	sense	intergenic	10363	same_strand	upstream	no
1	XLOC_127918	TCONS_00128315	LOC106034963	rna14889	antisense	intergenic	1504	divergent	upstream	no
1	XLOC_306615	TCONS_00307598	MOCOS	rna34746	sense	intergenic	232	same_strand	downstream	no
0	XLOC_306615	TCONS_00307598	MOCOS	rna34747	sense	intergenic	232	same_strand	downstream	no
1	XLOC_350319	TCONS_00351451	ALX3	rna40731	antisense	intergenic	6676	divergent	upstream	no
1	XLOC_118933	TCONS_00119305	LOC106034386	rna13749	sense	intergenic	328	same_strand	upstream	no
0	XLOC_118933	TCONS_00119305	LOC106034386	rna13750	sense	intergenic	1373	same_strand	upstream	no
0	XLOC_118933	TCONS_00119305	PPARGC1B	rna13751	sense	intergenic	5001	same_strand	downstream	no
1	XLOC_007754	TCONS_00007778	UVSSA	rna1214	sense	genic	0	nested	intronic	no
1	XLOC_153392	TCONS_00153888	LOC106036035	rna17277	sense	intergenic	999	same_strand	downstream	no
1	XLOC_222499	TCONS_00223199	LOC106039969	rna24997	sense	intergenic	48297	same_strand	upstream	no
0	XLOC_222499	TCONS_00223199	LOC106039969	rna24998	sense	intergenic	48777	same_strand	upstream	no
1	XLOC_328685	TCONS_00329726	RNF38	rna37359	sense	genic	0	nested	intronic	no
1	XLOC_017334	TCONS_00017397	BBX	rna2236	sense	genic	0	nested	intronic	no
0	XLOC_017334	TCONS_00017397	BBX	rna2230	sense	genic	0	nested	intronic	no
0	XLOC_017334	TCONS_00017397	BBX	rna2235	sense	genic	0	nested	intronic	no
0	XLOC_017334	TCONS_00017397	BBX	rna2234	sense	genic	0	nested	intronic	no
0	XLOC_017334	TCONS_00017397	BBX	rna2238	sense	intergenic	4970	same_strand	upstream	no
0	XLOC_017334	TCONS_00017397	BBX	rna2232	sense	genic	0	nested	intronic	no
0	XLOC_017334	TCONS_00017397	BBX	rna2231	sense	genic	0	nested	intronic	no
0	XLOC_017334	TCONS_00017397	BBX	rna2233	sense	genic	0	nested	intronic	no
0	XLOC_017334	TCONS_00017397	BBX	rna2229	sense	genic	0	nested	intronic	no
0	XLOC_017334	TCONS_00017397	BBX	rna2237	sense	genic	0	nested	intronic	no
0	XLOC_017334	TCONS_00017397	BBX	rna2228	sense	genic	0	nested	intronic	no
1	XLOC_182841	TCONS_00183436	LOC106037778	rna20272	sense	genic	0	nested	intronic	no
0	XLOC_182841	TCONS_00183436	LOC106037686	rna20273	sense	intergenic	6152	same_strand	upstream	no
0	XLOC_182841	TCONS_00183436	LOC106037776	rna20271	antisense	intergenic	9991	divergent	upstream	no
1	XLOC_255944	TCONS_00256763	LOC106042098	rna29271	antisense	intergenic	37493	convergent	downstream	no
1	XLOC_153453	TCONS_00153949	LOC106036273	rna17282	sense	intergenic	77574	same_strand	downstream	no
0	XLOC_153453	TCONS_00153949	LOC106036272	rna17283	sense	intergenic	77907	same_strand	upstream	no
1	XLOC_051314	TCONS_00051472	KBTBD11	rna5996	antisense	genic	0	nested	intronic	no
1	XLOC_345902	TCONS_00347016	UCHL1	rna40150	antisense	intergenic	8597	divergent	upstream	no
1	XLOC_017283	TCONS_00017355	LOC106038986	rna2221	sense	intergenic	5482	same_strand	upstream	no
1	XLOC_175568	TCONS_00176128	SKOR2	rna19650	antisense	intergenic	56674	divergent	upstream	no
1	XLOC_044360	TCONS_00044501	LOC106030172	rna5320	sense	intergenic	10218	same_strand	downstream	no
1	XLOC_252237	TCONS_00253043	LOC106041902	rna28945	sense	intergenic	18038	same_strand	upstream	no
1	XLOC_349531	TCONS_00350659	LOC106048368	rna40634	sense	intergenic	19443	same_strand	upstream	no
1	XLOC_249028	TCONS_00249826	LOC106041746	rna28574	antisense	intergenic	14099	convergent	downstream	no
1	XLOC_277994	TCONS_00278884	KHDRBS3	rna31426	sense	intergenic	59655	same_strand	downstream	no
1	XLOC_240960	TCONS_00241735	LOC106041175	rna27530	sense	intergenic	10755	same_strand	downstream	no
0	XLOC_240960	TCONS_00241735	LOC106041227	rna27531	sense	intergenic	10859	same_strand	upstream	yes
0	XLOC_240960	TCONS_00241735	LOC106041227	rna27532	sense	intergenic	10859	same_strand	upstream	yes
1	XLOC_177921	TCONS_00178494	PCDH11X	rna19716	antisense	genic	0	nested	intronic	no
1	XLOC_131239	TCONS_00131648	INTS10	rna15266	sense	genic	0	nested	intronic	no
0	XLOC_131239	TCONS_00131648	INTS10	rna15267	sense	genic	0	nested	intronic	no
0	XLOC_131239	TCONS_00131648	HGSNAT	rna15270	antisense	intergenic	4431	convergent	downstream	no
0	XLOC_131239	TCONS_00131648	HGSNAT	rna15268	antisense	intergenic	4431	convergent	downstream	no
0	XLOC_131239	TCONS_00131648	HGSNAT	rna15269	antisense	intergenic	4431	convergent	downstream	no
1	XLOC_079454	TCONS_00079686	LOC106031885	rna8727	antisense	intergenic	8372	convergent	downstream	no
1	XLOC_260766	TCONS_00261594	DACH1	rna29638	sense	genic	0	nested	intronic	no
1	XLOC_077106	TCONS_00077332	LOC106031714	rna8352	sense	intergenic	9750	same_strand	downstream	no
1	XLOC_277980	TCONS_00278869	LOC106043289	rna31424	sense	intergenic	47829	same_strand	upstream	no
0	XLOC_277980	TCONS_00278869	LOC106043289	rna31425	sense	intergenic	47830	same_strand	upstream	no
1	XLOC_100167	TCONS_00100488	LOC106033277	rna11352	antisense	intergenic	7222	convergent	downstream	no
1	XLOC_339433	TCONS_00340525	MYO9A	rna39057	sense	genic	0	nested	intronic	no
1	XLOC_164898	TCONS_00165429	SMOX	rna18580	sense	intergenic	2205	same_strand	downstream	no
0	XLOC_164898	TCONS_00165429	SMOX	rna18579	sense	intergenic	2205	same_strand	downstream	no
1	XLOC_171821	TCONS_00172372	CACNA1B	rna19161	antisense	genic	0	nested	intronic	no
1	XLOC_037464	TCONS_00037580	RHOU	rna4039	sense	intergenic	24132	same_strand	downstream	no
1	XLOC_136602	TCONS_00137030	ANKRD6	rna15792	sense	intergenic	31576	same_strand	upstream	no
1	XLOC_176780	TCONS_00177351	LOC106037305	rna19659	sense	intergenic	43798	same_strand	downstream	no
1	XLOC_347575	TCONS_00348699	BNC2	rna40378	antisense	genic	0	nested	intronic	no
1	XLOC_034157	TCONS_00034263	ANO6	rna3925	sense	genic	0	nested	intronic	no
1	XLOC_310639	TCONS_00311633	CTXN3	rna35102	sense	intergenic	993	same_strand	downstream	no
0	XLOC_310639	TCONS_00311633	CTXN3	rna35096	sense	intergenic	993	same_strand	downstream	no
0	XLOC_310639	TCONS_00311633	CTXN3	rna35098	sense	intergenic	993	same_strand	downstream	no
0	XLOC_310639	TCONS_00311633	CTXN3	rna35104	sense	intergenic	993	same_strand	downstream	no
0	XLOC_310639	TCONS_00311633	CTXN3	rna35100	sense	intergenic	993	same_strand	downstream	no
0	XLOC_310639	TCONS_00311633	CTXN3	rna35099	sense	intergenic	993	same_strand	downstream	no
0	XLOC_310639	TCONS_00311633	CTXN3	rna35095	sense	intergenic	993	same_strand	downstream	no
0	XLOC_310639	TCONS_00311633	CTXN3	rna35097	sense	intergenic	993	same_strand	downstream	no
0	XLOC_310639	TCONS_00311633	CTXN3	rna35101	sense	intergenic	993	same_strand	downstream	no
0	XLOC_310639	TCONS_00311633	CTXN3	rna35103	sense	intergenic	993	same_strand	downstream	no
1	XLOC_146775	TCONS_00147242	SLC9A7	rna16480	sense	intergenic	2305	same_strand	downstream	no
0	XLOC_146775	TCONS_00147242	SLC9A7	rna16482	sense	intergenic	8190	same_strand	downstream	no
0	XLOC_146775	TCONS_00147242	SLC9A7	rna16481	sense	intergenic	8190	same_strand	downstream	no
0	XLOC_146775	TCONS_00147242	SLC9A7	rna16483	sense	intergenic	8190	same_strand	downstream	no
1	XLOC_219520	TCONS_00220218	NDUFC2	rna24855	antisense	intergenic	160	convergent	downstream	no
0	XLOC_219520	TCONS_00220218	ALG8	rna24854	antisense	intergenic	6035	convergent	downstream	no
1	XLOC_248012	TCONS_00248807	MBOAT1	rna28446	antisense	intergenic	5088	divergent	upstream	no
1	XLOC_207263	TCONS_00207936	LOC106039012	rna23057	sense	intergenic	15971	same_strand	upstream	no
1	XLOC_061663	TCONS_00061851	LOC106030840	rna6367	sense	intergenic	36301	same_strand	downstream	no
1	XLOC_295510	TCONS_00296448	EPDR1	rna33536	sense	intergenic	13926	same_strand	downstream	yes
1	XLOC_018268	TCONS_00018333	VGLL3	rna2492	sense	intergenic	67177	same_strand	downstream	no
0	XLOC_018268	TCONS_00018333	VGLL3	rna2493	sense	intergenic	67177	same_strand	downstream	no
0	XLOC_018268	TCONS_00018333	VGLL3	rna2491	sense	intergenic	67177	same_strand	downstream	no
1	XLOC_152885	TCONS_00153377	UMODL1	rna17179	sense	intergenic	5115	same_strand	upstream	no
0	XLOC_152885	TCONS_00153377	UMODL1	rna17178	sense	intergenic	5115	same_strand	upstream	no
0	XLOC_152885	TCONS_00153377	UMODL1	rna17177	sense	intergenic	5115	same_strand	upstream	no
0	XLOC_152885	TCONS_00153377	UMODL1	rna17176	sense	intergenic	5115	same_strand	upstream	no
1	XLOC_343785	TCONS_00344896	XPR1	rna39703	sense	intergenic	1446	same_strand	upstream	yes
0	XLOC_343785	TCONS_00344896	UCK2	rna39704	sense	intergenic	7354	same_strand	downstream	no
1	XLOC_335102	TCONS_00336172	LOC106047196	rna38633	sense	intergenic	7191	same_strand	upstream	no
1	XLOC_121103	TCONS_00121483	LOC106034774	rna14140	sense	intergenic	3994	same_strand	upstream	no
0	XLOC_121103	TCONS_00121483	LOC106034774	rna14136	sense	intergenic	3994	same_strand	upstream	no
0	XLOC_121103	TCONS_00121483	LOC106034774	rna14134	sense	intergenic	3994	same_strand	upstream	no
0	XLOC_121103	TCONS_00121483	LOC106034774	rna14137	sense	intergenic	3994	same_strand	upstream	no
0	XLOC_121103	TCONS_00121483	LOC106034774	rna14135	sense	intergenic	3994	same_strand	upstream	no
0	XLOC_121103	TCONS_00121483	LOC106034774	rna14139	sense	intergenic	3994	same_strand	upstream	no
0	XLOC_121103	TCONS_00121483	LOC106034774	rna14138	sense	intergenic	3994	same_strand	upstream	no
0	XLOC_121103	TCONS_00121483	LOC106034774	rna14132	sense	intergenic	3994	same_strand	upstream	no
0	XLOC_121103	TCONS_00121483	LOC106034774	rna14133	sense	intergenic	3994	same_strand	upstream	no
1	XLOC_069864	TCONS_00070068	CCDC63	rna7198	sense	intergenic	9864	same_strand	upstream	no
1	XLOC_332427	TCONS_00333483	SMARCC1	rna37947	sense	genic	0	nested	intronic	no
1	XLOC_301001	TCONS_00301968	LOC106044630	rna34016	antisense	genic	0	nested	intronic	no
0	XLOC_301001	TCONS_00301968	MIB2	rna34018	sense	intergenic	3400	same_strand	upstream	no
0	XLOC_301001	TCONS_00301968	MIB2	rna34021	sense	intergenic	3400	same_strand	upstream	no
0	XLOC_301001	TCONS_00301968	LOC106044648	rna34009	antisense	intergenic	6055	divergent	upstream	no
0	XLOC_301001	TCONS_00301968	LOC106044630	rna34014	antisense	genic	0	nested	intronic	no
0	XLOC_301001	TCONS_00301968	LOC106044648	rna34010	antisense	intergenic	6055	divergent	upstream	no
0	XLOC_301001	TCONS_00301968	MIB2	rna34017	sense	intergenic	3399	same_strand	upstream	no
0	XLOC_301001	TCONS_00301968	LOC106044648	rna34011	antisense	intergenic	7142	divergent	upstream	no
0	XLOC_301001	TCONS_00301968	MIB2	rna34019	sense	intergenic	3400	same_strand	upstream	no
0	XLOC_301001	TCONS_00301968	LOC106044630	rna34015	antisense	genic	0	nested	intronic	no
0	XLOC_301001	TCONS_00301968	MIB2	rna34020	sense	intergenic	3400	same_strand	upstream	no
1	XLOC_138974	TCONS_00139412	THOC7	rna15940	antisense	intergenic	9578	divergent	upstream	no
1	XLOC_103277	TCONS_00103617	PDGFA	rna11856	sense	intergenic	18161	same_strand	downstream	no
1	XLOC_082418	TCONS_00082665	LOC106032117	rna9228	sense	intergenic	1769	same_strand	downstream	no
0	XLOC_082418	TCONS_00082665	SHMT1	rna9227	antisense	intergenic	6377	divergent	upstream	yes
0	XLOC_082418	TCONS_00082665	PRPSAP2	rna9229	sense	intergenic	2656	same_strand	upstream	no
1	XLOC_339761	TCONS_00340853	LOC106047475	rna39109	sense	intergenic	7953	same_strand	downstream	no
0	XLOC_339761	TCONS_00340853	LOC106047475	rna39112	sense	intergenic	7953	same_strand	downstream	no
0	XLOC_339761	TCONS_00340853	LOC106047475	rna39115	sense	intergenic	7953	same_strand	downstream	no
0	XLOC_339761	TCONS_00340853	LOC106047475	rna39111	sense	intergenic	7953	same_strand	downstream	no
0	XLOC_339761	TCONS_00340853	LOC106047475	rna39114	sense	intergenic	7953	same_strand	downstream	no
0	XLOC_339761	TCONS_00340853	LOC106047475	rna39110	sense	intergenic	7953	same_strand	downstream	no
0	XLOC_339761	TCONS_00340853	LOC106047475	rna39113	sense	intergenic	7953	same_strand	downstream	no
1	XLOC_140330	TCONS_00140775	FRMD4B	rna16010	sense	genic	0	nested	intronic	yes
1	XLOC_190320	TCONS_00190930	LOC106038367	rna21549	sense	intergenic	21461	same_strand	downstream	no
1	XLOC_034336	TCONS_00034443	PRICKLE1	rna3956	antisense	intergenic	19270	divergent	upstream	yes
1	XLOC_184458	TCONS_00185055	ASB9	rna20519	antisense	intergenic	1780	divergent	upstream	yes
1	XLOC_083168	TCONS_00083423	TBL1XR1	rna8987	sense	intergenic	5420	same_strand	downstream	no
0	XLOC_083168	TCONS_00083423	TBL1XR1	rna8988	sense	intergenic	5420	same_strand	downstream	no
1	XLOC_096693	TCONS_00096995	DAB1	rna10722	sense	genic	0	nested	intronic	no
1	XLOC_308492	TCONS_00309480	SDC3	rna34970	antisense	intergenic	6371	convergent	downstream	no
1	XLOC_088291	TCONS_00088569	RPS12	rna9869	sense	intergenic	247	same_strand	downstream	no
1	XLOC_037762	TCONS_00037889	TARBP1	rna4097	sense	intergenic	17457	same_strand	upstream	no
1	XLOC_234346	TCONS_00235088	COL9A3	rna26764	sense	genic	0	nested	intronic	no
1	XLOC_262745	TCONS_00263580	ARAP1	rna29686	antisense	intergenic	32779	convergent	downstream	no
0	XLOC_262745	TCONS_00263580	LOC106042361	rna29687	antisense	intergenic	39242	divergent	upstream	no
1	XLOC_149866	TCONS_00150346	LOC106035969	rna16961	sense	intergenic	7480	same_strand	downstream	no
1	XLOC_201190	TCONS_00201824	LOC106038805	rna22584	sense	intergenic	51377	same_strand	upstream	no
0	XLOC_201190	TCONS_00201824	BRMS1L	rna22583	sense	intergenic	56713	same_strand	downstream	no
1	XLOC_222915	TCONS_00223615	ATP2B2	rna25177	sense	genic	0	nested	intronic	yes
0	XLOC_222915	TCONS_00223615	ATP2B2	rna25180	sense	intergenic	5744	same_strand	upstream	yes
0	XLOC_222915	TCONS_00223615	ATP2B2	rna25175	sense	genic	0	nested	intronic	yes
0	XLOC_222915	TCONS_00223615	ATP2B2	rna25179	sense	genic	0	nested	intronic	yes
0	XLOC_222915	TCONS_00223615	ATP2B2	rna25178	sense	genic	0	nested	intronic	yes
0	XLOC_222915	TCONS_00223615	ATP2B2	rna25176	sense	genic	0	nested	intronic	yes
1	XLOC_226964	TCONS_00227675	LOC106040367	rna25858	sense	intergenic	21015	same_strand	downstream	no
1	XLOC_277765	TCONS_00278654	WISP1	rna31448	antisense	intergenic	2324	convergent	downstream	no
0	XLOC_277765	TCONS_00278654	NDRG1	rna31447	sense	intergenic	4165	same_strand	downstream	no
1	XLOC_139494	TCONS_00139932	LOC106035440	rna16069	antisense	intergenic	1968	divergent	upstream	no
0	XLOC_139494	TCONS_00139932	PDZRN3	rna16065	antisense	intergenic	8006	divergent	upstream	no
1	XLOC_118986	TCONS_00119360	NDUFA10	rna13783	sense	intergenic	41965	same_strand	downstream	no
1	XLOC_303794	TCONS_00304771	LOC106044793	rna34384	sense	genic	0	nested	intronic	no
1	XLOC_335651	TCONS_00336725	ENG	rna38827	sense	intergenic	2626	same_strand	upstream	no
0	XLOC_335651	TCONS_00336725	AK1	rna38828	sense	intergenic	4389	same_strand	downstream	no
1	XLOC_337047	TCONS_00338128	OSR1	rna38952	sense	intergenic	484	same_strand	upstream	no
0	XLOC_337047	TCONS_00338128	LOC106047364	rna38951	sense	intergenic	9824	same_strand	upstream	no
1	XLOC_243538	TCONS_00244320	LOC106041419	rna28044	antisense	intergenic	8098	divergent	upstream	yes
1	XLOC_012778	TCONS_00012816	SORCS2	rna1367	sense	genic	0	nested	intronic	no
0	XLOC_012778	TCONS_00012816	SORCS2	rna1368	sense	genic	0	nested	intronic	no
0	XLOC_012778	TCONS_00012816	SORCS2	rna1376	sense	genic	0	nested	intronic	no
0	XLOC_012778	TCONS_00012816	SORCS2	rna1370	sense	genic	0	nested	intronic	no
0	XLOC_012778	TCONS_00012816	SORCS2	rna1374	sense	genic	0	nested	intronic	no
0	XLOC_012778	TCONS_00012816	SORCS2	rna1372	sense	genic	0	nested	intronic	no
0	XLOC_012778	TCONS_00012816	SORCS2	rna1369	sense	genic	0	nested	intronic	no
0	XLOC_012778	TCONS_00012816	SORCS2	rna1373	sense	genic	0	nested	intronic	no
0	XLOC_012778	TCONS_00012816	SORCS2	rna1371	sense	genic	0	nested	intronic	no
0	XLOC_012778	TCONS_00012816	SORCS2	rna1377	sense	genic	0	nested	intronic	no
0	XLOC_012778	TCONS_00012816	SORCS2	rna1375	sense	genic	0	nested	intronic	no
1	XLOC_247347	TCONS_00248137	TMEM182	rna28397	sense	intergenic	38683	same_strand	downstream	no
1	XLOC_087520	TCONS_00087797	PKIB	rna9735	sense	genic	0	nested	intronic	no
0	XLOC_087520	TCONS_00087797	PKIB	rna9729	sense	genic	0	nested	intronic	no
0	XLOC_087520	TCONS_00087797	PKIB	rna9733	sense	genic	0	nested	intronic	no
0	XLOC_087520	TCONS_00087797	PKIB	rna9732	sense	genic	0	nested	intronic	no
0	XLOC_087520	TCONS_00087797	PKIB	rna9730	sense	genic	0	nested	intronic	no
0	XLOC_087520	TCONS_00087797	PKIB	rna9734	sense	genic	0	nested	intronic	no
0	XLOC_087520	TCONS_00087797	PKIB	rna9731	sense	genic	0	nested	intronic	no
1	XLOC_005457	TCONS_00005468	RTKN2	rna733	antisense	genic	0	nested	intronic	yes
0	XLOC_005457	TCONS_00005468	RTKN2	rna731	antisense	genic	0	nested	intronic	yes
0	XLOC_005457	TCONS_00005468	RTKN2	rna735	antisense	genic	0	nested	intronic	yes
0	XLOC_005457	TCONS_00005468	RTKN2	rna736	antisense	genic	0	nested	intronic	yes
0	XLOC_005457	TCONS_00005468	RTKN2	rna732	antisense	genic	0	nested	intronic	yes
0	XLOC_005457	TCONS_00005468	RTKN2	rna737	antisense	genic	0	nested	intronic	yes
0	XLOC_005457	TCONS_00005468	RTKN2	rna734	antisense	genic	0	nested	intronic	yes
0	XLOC_005457	TCONS_00005468	RTKN2	rna730	antisense	genic	0	nested	intronic	yes
1	XLOC_251234	TCONS_00252034	STAC	rna28731	antisense	genic	0	nested	intronic	no
0	XLOC_251234	TCONS_00252034	STAC	rna28730	antisense	genic	0	nested	intronic	no
0	XLOC_251234	TCONS_00252034	STAC	rna28729	antisense	genic	0	nested	intronic	no
1	XLOC_317843	TCONS_00318853	ANGPTL4	rna35897	sense	intergenic	14953	same_strand	upstream	no
1	XLOC_332523	TCONS_00333586	CDC25A	rna37937	antisense	intergenic	10327	convergent	downstream	yes
1	XLOC_245706	TCONS_00246490	DNM3	rna28268	antisense	genic	0	nested	intronic	no
0	XLOC_245706	TCONS_00246490	DNM3	rna28267	antisense	genic	0	nested	intronic	no
0	XLOC_245706	TCONS_00246490	DNM3	rna28269	antisense	genic	0	nested	intronic	no
1	XLOC_044820	TCONS_00044961	FAM126A	rna5385	antisense	intergenic	2360	divergent	upstream	no
0	XLOC_044820	TCONS_00044961	FAM126A	rna5386	antisense	intergenic	2366	divergent	upstream	no
0	XLOC_044820	TCONS_00044961	FAM126A	rna5387	antisense	intergenic	2366	divergent	upstream	no
0	XLOC_044820	TCONS_00044961	FAM126A	rna5391	antisense	intergenic	2366	divergent	upstream	no
0	XLOC_044820	TCONS_00044961	FAM126A	rna5388	antisense	intergenic	2602	divergent	upstream	no
1	XLOC_037830	TCONS_00037953	LYST	rna4113	sense	intergenic	19799	same_strand	upstream	no
1	XLOC_217662	TCONS_00218357	RBM7	rna24727	antisense	intergenic	753	divergent	upstream	no
0	XLOC_217662	TCONS_00218357	REXO2	rna24726	antisense	intergenic	4518	divergent	upstream	no
0	XLOC_217662	TCONS_00218357	ZBTB16	rna24728	sense	intergenic	4843	same_strand	upstream	no
1	XLOC_329597	TCONS_00330643	PGGT1B	rna37445	sense	intergenic	4885	same_strand	downstream	no
0	XLOC_329597	TCONS_00330643	TRIM36	rna37448	sense	intergenic	8716	same_strand	upstream	no
0	XLOC_329597	TCONS_00330643	TRIM36	rna37446	sense	intergenic	8410	same_strand	upstream	no
0	XLOC_329597	TCONS_00330643	TRIM36	rna37447	sense	intergenic	8410	same_strand	upstream	no
1	XLOC_308302	TCONS_00309290	LYRM7	rna34889	sense	intergenic	6749	same_strand	downstream	no
1	XLOC_212978	TCONS_00213666	PDE10A	rna24087	sense	genic	0	nested	intronic	no
1	XLOC_358532	TCONS_00359710	LOC106029345	rna42963	antisense	intergenic	2214	divergent	upstream	no
0	XLOC_358532	TCONS_00359710	LOC106029346	rna42958	antisense	intergenic	2508	convergent	downstream	no
0	XLOC_358532	TCONS_00359710	LOC106029346	rna42960	antisense	intergenic	2508	convergent	downstream	no
0	XLOC_358532	TCONS_00359710	LOC106029346	rna42956	antisense	intergenic	2508	convergent	downstream	no
0	XLOC_358532	TCONS_00359710	LOC106029346	rna42961	antisense	intergenic	2508	convergent	downstream	no
0	XLOC_358532	TCONS_00359710	LOC106029346	rna42959	antisense	intergenic	2508	convergent	downstream	no
0	XLOC_358532	TCONS_00359710	LOC106029346	rna42957	antisense	intergenic	2508	convergent	downstream	no
0	XLOC_358532	TCONS_00359710	LOC106029346	rna42962	antisense	intergenic	2508	convergent	downstream	no
1	XLOC_073379	TCONS_00073598	EML4	rna7935	sense	intergenic	2623	same_strand	downstream	no
0	XLOC_073379	TCONS_00073598	EML4	rna7937	sense	intergenic	2624	same_strand	downstream	no
0	XLOC_073379	TCONS_00073598	EML4	rna7936	sense	intergenic	2624	same_strand	downstream	no
0	XLOC_073379	TCONS_00073598	EML4	rna7938	sense	intergenic	2624	same_strand	downstream	no
0	XLOC_073379	TCONS_00073598	EML4	rna7940	sense	intergenic	2625	same_strand	downstream	no
0	XLOC_073379	TCONS_00073598	EML4	rna7942	sense	intergenic	2625	same_strand	downstream	no
0	XLOC_073379	TCONS_00073598	EML4	rna7941	sense	intergenic	2625	same_strand	downstream	no
0	XLOC_073379	TCONS_00073598	EML4	rna7933	sense	intergenic	2623	same_strand	downstream	no
0	XLOC_073379	TCONS_00073598	EML4	rna7932	sense	intergenic	2623	same_strand	downstream	no
0	XLOC_073379	TCONS_00073598	EML4	rna7934	sense	intergenic	2623	same_strand	downstream	no
0	XLOC_073379	TCONS_00073598	EML4	rna7939	sense	intergenic	2624	same_strand	downstream	no
1	XLOC_054057	TCONS_00054223	LOC106030491	rna6041	antisense	intergenic	14273	convergent	downstream	no
1	XLOC_172647	TCONS_00173200	ATP6V1G1	rna19154	sense	intergenic	92	same_strand	downstream	no
0	XLOC_172647	TCONS_00173200	LOC106037142	rna19153	sense	intergenic	8674	same_strand	upstream	no
1	XLOC_063300	TCONS_00063488	RDH14	rna6522	sense	intergenic	4918	same_strand	downstream	yes
1	XLOC_254943	TCONS_00255755	IFRD1	rna29142	antisense	intergenic	17858	divergent	upstream	no
0	XLOC_254943	TCONS_00255755	ZNF277	rna29141	antisense	intergenic	18557	convergent	downstream	no
1	XLOC_061663	TCONS_00061852	LOC106030840	rna6367	sense	intergenic	33656	same_strand	downstream	no
1	XLOC_324419	TCONS_00325449	YBX3	rna37038	sense	intergenic	27373	same_strand	upstream	no
1	XLOC_127860	TCONS_00128256	RAB31	rna14873	antisense	intergenic	12018	divergent	upstream	no
0	XLOC_127860	TCONS_00128256	PPP4R1	rna14858	sense	intergenic	14051	same_strand	upstream	no
0	XLOC_127860	TCONS_00128256	PPP4R1	rna14863	sense	intergenic	15286	same_strand	upstream	no
0	XLOC_127860	TCONS_00128256	PPP4R1	rna14867	sense	intergenic	15414	same_strand	upstream	no
0	XLOC_127860	TCONS_00128256	PPP4R1	rna14865	sense	intergenic	15414	same_strand	upstream	no
0	XLOC_127860	TCONS_00128256	PPP4R1	rna14866	sense	intergenic	15414	same_strand	upstream	no
0	XLOC_127860	TCONS_00128256	PPP4R1	rna14859	sense	intergenic	14051	same_strand	upstream	no
0	XLOC_127860	TCONS_00128256	RAB31	rna14874	antisense	intergenic	12423	divergent	upstream	no
0	XLOC_127860	TCONS_00128256	PPP4R1	rna14868	sense	intergenic	19661	same_strand	upstream	no
0	XLOC_127860	TCONS_00128256	PPP4R1	rna14860	sense	intergenic	14051	same_strand	upstream	no
0	XLOC_127860	TCONS_00128256	PPP4R1	rna14864	sense	intergenic	15385	same_strand	upstream	no
0	XLOC_127860	TCONS_00128256	PPP4R1	rna14862	sense	intergenic	15286	same_strand	upstream	no
0	XLOC_127860	TCONS_00128256	PPP4R1	rna14861	sense	intergenic	14051	same_strand	upstream	no
1	XLOC_136312	TCONS_00136736	TBX18	rna15726	antisense	intergenic	3587	divergent	upstream	no
1	XLOC_353826	TCONS_00354973	TMEM40	rna41489	antisense	intergenic	361	divergent	upstream	no
0	XLOC_353826	TCONS_00354973	TMEM40	rna41488	antisense	intergenic	361	divergent	upstream	no
1	XLOC_228675	TCONS_00229393	KCMF1	rna25984	antisense	intergenic	5451	divergent	upstream	no
0	XLOC_228675	TCONS_00229393	FNTA	rna25983	antisense	intergenic	6505	convergent	downstream	no
1	XLOC_217944	TCONS_00218641	CBL	rna24557	sense	genic	0	nested	intronic	no
0	XLOC_217944	TCONS_00218641	CCDC153	rna24558	antisense	intergenic	9571	divergent	upstream	no
1	XLOC_099299	TCONS_00099617	CCDC102A	rna11190	sense	intergenic	326	same_strand	upstream	no
0	XLOC_099299	TCONS_00099617	ADGRG5	rna11188	antisense	intergenic	3665	divergent	upstream	no
0	XLOC_099299	TCONS_00099617	ADGRG5	rna11186	antisense	intergenic	1020	divergent	upstream	no
0	XLOC_099299	TCONS_00099617	ADGRG5	rna11189	antisense	intergenic	3665	divergent	upstream	no
0	XLOC_099299	TCONS_00099617	ADGRG5	rna11187	antisense	intergenic	1021	divergent	upstream	no
0	XLOC_099299	TCONS_00099617	ADGRG5	rna11185	antisense	intergenic	1020	divergent	upstream	no
1	XLOC_311252	TCONS_00312249	LOC106045241	rna35133	antisense	intergenic	14124	divergent	upstream	no
1	XLOC_305744	TCONS_00306725	TXNL1	rna34523	antisense	intergenic	82533	convergent	downstream	no
1	XLOC_265755	TCONS_00266604	MOB2	rna30249	sense	genic	0	nested	intronic	no
0	XLOC_265755	TCONS_00266604	MOB2	rna30252	sense	intergenic	5793	same_strand	upstream	no
0	XLOC_265755	TCONS_00266604	MOB2	rna30248	sense	genic	0	nested	intronic	no
0	XLOC_265755	TCONS_00266604	MOB2	rna30251	sense	genic	0	nested	intronic	no
0	XLOC_265755	TCONS_00266604	MOB2	rna30250	sense	genic	0	nested	intronic	no
0	XLOC_265755	TCONS_00266604	MOB2	rna30253	sense	intergenic	7101	same_strand	upstream	no
1	XLOC_011955	TCONS_00011990	CTBP1	rna1207	sense	intergenic	35390	same_strand	downstream	no
0	XLOC_011955	TCONS_00011990	CTBP1	rna1205	sense	intergenic	35390	same_strand	downstream	no
0	XLOC_011955	TCONS_00011990	CTBP1	rna1202	sense	intergenic	35390	same_strand	downstream	no
0	XLOC_011955	TCONS_00011990	CTBP1	rna1203	sense	intergenic	35390	same_strand	downstream	no
0	XLOC_011955	TCONS_00011990	CTBP1	rna1206	sense	intergenic	35390	same_strand	downstream	no
0	XLOC_011955	TCONS_00011990	CTBP1	rna1208	sense	intergenic	35390	same_strand	downstream	no
0	XLOC_011955	TCONS_00011990	CTBP1	rna1204	sense	intergenic	35390	same_strand	downstream	no
1	XLOC_346058	TCONS_00347175	LOC106048076	rna40173	sense	genic	0	nested	intronic	no
1	XLOC_352896	TCONS_00354042	LOC106048832	rna41371	antisense	intergenic	616	convergent	downstream	no
1	XLOC_248469	TCONS_00249264	LOC106041696	rna28493	sense	intergenic	2193	same_strand	upstream	no
1	XLOC_198065	TCONS_00198693	CAMK2D	rna22253	sense	intergenic	12026	same_strand	upstream	no
0	XLOC_198065	TCONS_00198693	CAMK2D	rna22254	sense	intergenic	12041	same_strand	upstream	no
0	XLOC_198065	TCONS_00198693	CAMK2D	rna22255	sense	intergenic	12042	same_strand	upstream	no
0	XLOC_198065	TCONS_00198693	CAMK2D	rna22256	sense	intergenic	12043	same_strand	upstream	no
1	XLOC_165964	TCONS_00166500	LOC106036792	rna18801	antisense	intergenic	8337	divergent	upstream	yes
1	XLOC_348325	TCONS_00349453	MYRF	rna40507	sense	genic	0	nested	intronic	no
1	XLOC_295371	TCONS_00296308	ENO1	rna33446	sense	intergenic	14785	same_strand	downstream	no
0	XLOC_295371	TCONS_00296308	ENO1	rna33445	sense	intergenic	14785	same_strand	downstream	no
1	XLOC_332769	TCONS_00333835	BCAS3	rna38025	sense	genic	0	nested	intronic	no
0	XLOC_332769	TCONS_00333835	BCAS3	rna38031	sense	genic	0	nested	intronic	no
0	XLOC_332769	TCONS_00333835	BCAS3	rna38032	sense	genic	0	nested	intronic	no
0	XLOC_332769	TCONS_00333835	BCAS3	rna38028	sense	genic	0	nested	intronic	no
0	XLOC_332769	TCONS_00333835	BCAS3	rna38024	sense	genic	0	nested	intronic	no
0	XLOC_332769	TCONS_00333835	BCAS3	rna38033	sense	genic	0	nested	intronic	no
0	XLOC_332769	TCONS_00333835	BCAS3	rna38026	sense	genic	0	nested	intronic	no
0	XLOC_332769	TCONS_00333835	BCAS3	rna38027	sense	genic	0	nested	intronic	no
0	XLOC_332769	TCONS_00333835	BCAS3	rna38029	sense	genic	0	nested	intronic	no
0	XLOC_332769	TCONS_00333835	BCAS3	rna38030	sense	genic	0	nested	intronic	no
1	XLOC_001566	TCONS_00001571	LOC106030751	rna596	sense	genic	0	nested	intronic	no
0	XLOC_001566	TCONS_00001571	LOC106030751	rna598	sense	genic	0	nested	intronic	no
0	XLOC_001566	TCONS_00001571	LOC106030751	rna595	sense	genic	0	nested	intronic	no
0	XLOC_001566	TCONS_00001571	LOC106030725	rna600	sense	intergenic	5816	same_strand	upstream	no
0	XLOC_001566	TCONS_00001571	LOC106030751	rna597	sense	genic	0	nested	intronic	no
0	XLOC_001566	TCONS_00001571	LOC106030725	rna599	sense	intergenic	5816	same_strand	upstream	no
1	XLOC_306093	TCONS_00307074	EPS15L1	rna34615	sense	intergenic	2153	same_strand	downstream	no
0	XLOC_306093	TCONS_00307074	KLF2	rna34616	antisense	intergenic	3262	convergent	downstream	yes
1	XLOC_252908	TCONS_00253715	NR5A2	rna29023	antisense	intergenic	26130	convergent	downstream	no
1	XLOC_331965	TCONS_00333018	PMP22	rna37827	sense	intergenic	4634	same_strand	downstream	no
1	XLOC_237673	TCONS_00238446	LOC106041021	rna27168	sense	intergenic	10587	same_strand	upstream	no
0	XLOC_237673	TCONS_00238446	LOC106041021	rna27169	sense	intergenic	10587	same_strand	upstream	no
1	XLOC_240748	TCONS_00241523	LOC106041233	rna27492	sense	intergenic	12206	same_strand	upstream	no
1	XLOC_009398	TCONS_00009424	LOC106035609	rna1546	antisense	intergenic	3347	convergent	downstream	no
0	XLOC_009398	TCONS_00009424	LOC106035614	rna1547	sense	intergenic	8600	same_strand	upstream	no
1	XLOC_085212	TCONS_00085474	CPE	rna9622	sense	intergenic	968	same_strand	downstream	yes
0	XLOC_085212	TCONS_00085474	CPE	rna9621	sense	intergenic	969	same_strand	downstream	yes
0	XLOC_085212	TCONS_00085474	CPE	rna9624	sense	intergenic	968	same_strand	downstream	yes
0	XLOC_085212	TCONS_00085474	CPE	rna9623	sense	intergenic	968	same_strand	downstream	yes
1	XLOC_082925	TCONS_00083175	PLD1	rna8930	sense	intergenic	626	same_strand	upstream	no
1	XLOC_242206	TCONS_00242983	LOC106041251	rna27571	antisense	genic	0	nested	intronic	no
0	XLOC_242206	TCONS_00242983	LOC106041251	rna27572	antisense	genic	0	nested	intronic	no
0	XLOC_242206	TCONS_00242983	LOC106041251	rna27583	antisense	genic	0	nested	intronic	no
0	XLOC_242206	TCONS_00242983	LOC106041251	rna27582	antisense	genic	0	nested	intronic	no
1	XLOC_134346	TCONS_00134762	LRP12	rna15620	antisense	intergenic	2071	convergent	downstream	no
0	XLOC_134346	TCONS_00134762	DPYS	rna15619	antisense	intergenic	2109	divergent	upstream	yes
1	XLOC_118883	TCONS_00119255	FBXO38	rna13739	antisense	intergenic	509	divergent	upstream	no
0	XLOC_118883	TCONS_00119255	FBXO38	rna13741	antisense	intergenic	509	divergent	upstream	no
0	XLOC_118883	TCONS_00119255	FBXO38	rna13738	antisense	intergenic	509	divergent	upstream	no
0	XLOC_118883	TCONS_00119255	FBXO38	rna13740	antisense	intergenic	509	divergent	upstream	no
0	XLOC_118883	TCONS_00119255	FBXO38	rna13742	antisense	intergenic	3013	divergent	upstream	no
1	XLOC_192558	TCONS_00193173	LOC106038387	rna21817	antisense	intergenic	42020	divergent	upstream	no
1	XLOC_098172	TCONS_00098479	PPAP2B	rna10758	antisense	intergenic	21502	convergent	downstream	no
0	XLOC_098172	TCONS_00098479	PPAP2B	rna10757	antisense	intergenic	21822	convergent	downstream	no
1	XLOC_057933	TCONS_00058108	PEX2	rna6216	antisense	intergenic	1336	divergent	upstream	no
1	XLOC_269820	TCONS_00270683	BOD1	rna30491	sense	intergenic	2912	same_strand	upstream	no
1	XLOC_100164	TCONS_00100483	MAF	rna11351	antisense	intergenic	2149	divergent	upstream	no
1	XLOC_008168	TCONS_00008194	TNIP2	rna1276	antisense	intergenic	1005	convergent	downstream	no
0	XLOC_008168	TCONS_00008194	LOC106034519	rna1274	sense	intergenic	8187	same_strand	downstream	no
0	XLOC_008168	TCONS_00008194	LOC106034519	rna1273	sense	intergenic	8187	same_strand	downstream	no
1	XLOC_144460	TCONS_00144919	ANKRD55	rna16260	sense	intergenic	7512	same_strand	upstream	no
0	XLOC_144460	TCONS_00144919	ANKRD55	rna16259	sense	intergenic	7512	same_strand	upstream	no
1	XLOC_282944	TCONS_00283845	LHX8	rna32091	sense	intergenic	2815	same_strand	upstream	no
1	XLOC_098378	TCONS_00098694	ZCCHC11	rna10824	antisense	intergenic	1242	convergent	downstream	no
0	XLOC_098378	TCONS_00098694	PRPF38A	rna10829	sense	intergenic	1711	same_strand	downstream	no
0	XLOC_098378	TCONS_00098694	ORC1	rna10830	antisense	intergenic	5557	divergent	upstream	no
0	XLOC_098378	TCONS_00098694	ZCCHC11	rna10825	antisense	intergenic	1243	convergent	downstream	no
0	XLOC_098378	TCONS_00098694	ORC1	rna10831	antisense	intergenic	5715	divergent	upstream	no
0	XLOC_098378	TCONS_00098694	ZCCHC11	rna10828	antisense	intergenic	1244	convergent	downstream	no
0	XLOC_098378	TCONS_00098694	ZCCHC11	rna10826	antisense	intergenic	1243	convergent	downstream	no
0	XLOC_098378	TCONS_00098694	ZCCHC11	rna10827	antisense	intergenic	1244	convergent	downstream	no
1	XLOC_130257	TCONS_00130664	FNDC3A	rna15095	sense	intergenic	57	same_strand	upstream	no
0	XLOC_130257	TCONS_00130664	FNDC3A	rna15096	sense	intergenic	67	same_strand	upstream	no
1	XLOC_317139	TCONS_00318146	MED13L	rna35657	sense	genic	0	nested	intronic	yes
1	XLOC_083277	TCONS_00083533	ZMAT3	rna9014	sense	intergenic	291	same_strand	downstream	no
0	XLOC_083277	TCONS_00083533	ZMAT3	rna9012	sense	intergenic	291	same_strand	downstream	no
0	XLOC_083277	TCONS_00083533	ZMAT3	rna9013	sense	intergenic	291	same_strand	downstream	no
1	XLOC_154195	TCONS_00154696	AP1S3	rna17489	sense	genic	0	nested	intronic	no
1	XLOC_134025	TCONS_00134440	LOC106035266	rna15543	sense	intergenic	1332	same_strand	downstream	no
0	XLOC_134025	TCONS_00134440	NIPAL2	rna15544	antisense	intergenic	7653	convergent	downstream	yes
0	XLOC_134025	TCONS_00134440	POP1	rna15542	sense	intergenic	9150	same_strand	downstream	no
1	XLOC_205592	TCONS_00206259	LOC106039008	rna22947	antisense	intergenic	32659	convergent	downstream	no
0	XLOC_205592	TCONS_00206259	LOC106039008	rna22954	antisense	intergenic	34914	convergent	downstream	no
0	XLOC_205592	TCONS_00206259	LOC106039008	rna22950	antisense	intergenic	32659	convergent	downstream	no
0	XLOC_205592	TCONS_00206259	LOC106039008	rna22946	antisense	intergenic	32659	convergent	downstream	no
0	XLOC_205592	TCONS_00206259	LOC106039008	rna22952	antisense	intergenic	32659	convergent	downstream	no
0	XLOC_205592	TCONS_00206259	LOC106039008	rna22948	antisense	intergenic	32659	convergent	downstream	no
0	XLOC_205592	TCONS_00206259	LOC106039008	rna22949	antisense	intergenic	32659	convergent	downstream	no
0	XLOC_205592	TCONS_00206259	LOC106039008	rna22951	antisense	intergenic	32659	convergent	downstream	no
0	XLOC_205592	TCONS_00206259	LOC106039008	rna22953	antisense	intergenic	32659	convergent	downstream	no
1	XLOC_329380	TCONS_00330424	KLHDC4	rna37391	sense	genic	0	nested	intronic	no
1	XLOC_341791	TCONS_00342891	CLDN16	rna39416	sense	intergenic	4663	same_strand	upstream	no
0	XLOC_341791	TCONS_00342891	CLDN1	rna39417	antisense	intergenic	4704	divergent	upstream	no
1	XLOC_194752	TCONS_00195373	SNTB1	rna21955	sense	intergenic	24135	same_strand	upstream	yes
1	XLOC_341051	TCONS_00342150	LOC106047568	rna39327	antisense	intergenic	22292	convergent	downstream	no
1	XLOC_175641	TCONS_00176209	LOC106037305	rna19659	antisense	intergenic	3557	convergent	downstream	no
1	XLOC_175706	TCONS_00176275	LOC106037332	rna19705	sense	genic	0	nested	intronic	no
0	XLOC_175706	TCONS_00176275	MEX3C	rna19702	antisense	intergenic	5254	divergent	upstream	no
0	XLOC_175706	TCONS_00176275	MEX3C	rna19703	antisense	intergenic	8651	divergent	upstream	no
0	XLOC_175706	TCONS_00176275	MEX3C	rna19704	antisense	intergenic	8633	divergent	upstream	no
1	XLOC_331931	TCONS_00332984	NTN1	rna37804	sense	intergenic	37921	same_strand	upstream	no
1	XLOC_055563	TCONS_00055730	ZFHX4	rna6217	antisense	intergenic	71339	divergent	upstream	no
1	XLOC_238614	TCONS_00239376	WBSCR27	rna27253	antisense	intergenic	22723	divergent	upstream	yes
0	XLOC_238614	TCONS_00239376	LOC106041045	rna27252	sense	intergenic	25269	same_strand	downstream	no
0	XLOC_238614	TCONS_00239376	LOC106041034	rna27251	sense	intergenic	28896	same_strand	downstream	no
1	XLOC_333012	TCONS_00334078	RND3	rna38103	sense	intergenic	11402	same_strand	downstream	no
1	XLOC_105463	TCONS_00105817	ICE2	rna12301	sense	intergenic	5189	same_strand	downstream	no
0	XLOC_105463	TCONS_00105817	ANXA2	rna12299	sense	intergenic	7655	same_strand	upstream	yes
0	XLOC_105463	TCONS_00105817	ICE2	rna12302	sense	intergenic	7165	same_strand	downstream	no
1	XLOC_178888	TCONS_00179464	LOC106037513	rna19969	sense	intergenic	101	same_strand	downstream	no
1	XLOC_038934	TCONS_00039061	LOC106029473	rna4351	antisense	intergenic	4407	divergent	upstream	no
0	XLOC_038934	TCONS_00039061	LOC106029463	rna4350	antisense	intergenic	6087	convergent	downstream	yes
1	XLOC_304903	TCONS_00305883	LOC106044881	rna34475	sense	intergenic	87667	same_strand	upstream	no
0	XLOC_304903	TCONS_00305883	ARGLU1	rna34474	antisense	intergenic	89417	divergent	upstream	no
0	XLOC_304903	TCONS_00305883	LOC106044881	rna34476	sense	intergenic	87840	same_strand	upstream	no
0	XLOC_304903	TCONS_00305883	LOC106044881	rna34477	sense	intergenic	87931	same_strand	upstream	no
1	XLOC_254855	TCONS_00255666	ST7	rna29179	sense	intergenic	189	same_strand	upstream	no
1	XLOC_035210	TCONS_00035318	NID1	rna4114	antisense	intergenic	26711	convergent	downstream	no
1	XLOC_266833	TCONS_00267687	LOC106042641	rna30282	antisense	intergenic	66830	divergent	upstream	no
0	XLOC_266833	TCONS_00267687	LOC106042641	rna30281	antisense	intergenic	66830	divergent	upstream	no
1	XLOC_166561	TCONS_00167103	GARS	rna18708	sense	intergenic	12062	same_strand	upstream	no
1	XLOC_115412	TCONS_00115780	LRP11	rna13269	sense	genic	0	nested	intronic	no
0	XLOC_115412	TCONS_00115780	LOC106034274	rna13270	antisense	intergenic	8934	divergent	upstream	no
1	XLOC_338531	TCONS_00339623	FHOD3	rna39020	sense	genic	0	nested	intronic	no
0	XLOC_338531	TCONS_00339623	FHOD3	rna39017	sense	genic	0	nested	intronic	no
0	XLOC_338531	TCONS_00339623	FHOD3	rna39015	sense	genic	0	nested	intronic	no
0	XLOC_338531	TCONS_00339623	FHOD3	rna39019	sense	genic	0	nested	intronic	no
0	XLOC_338531	TCONS_00339623	FHOD3	rna39018	sense	genic	0	nested	intronic	no
0	XLOC_338531	TCONS_00339623	FHOD3	rna39016	sense	genic	0	nested	intronic	no
1	XLOC_284128	TCONS_00285035	ARSK	rna32273	sense	intergenic	1345	same_strand	downstream	no
0	XLOC_284128	TCONS_00285035	RFESD	rna32274	sense	intergenic	5847	same_strand	upstream	no
1	XLOC_099222	TCONS_00099540	FAM65A	rna11091	antisense	intergenic	3385	convergent	downstream	no
0	XLOC_099222	TCONS_00099540	CTCF	rna11088	antisense	intergenic	5473	divergent	upstream	no
0	XLOC_099222	TCONS_00099540	CTCF	rna11090	antisense	intergenic	5473	divergent	upstream	no
0	XLOC_099222	TCONS_00099540	CTCF	rna11087	antisense	intergenic	5467	divergent	upstream	no
0	XLOC_099222	TCONS_00099540	CTCF	rna11089	antisense	intergenic	5473	divergent	upstream	no
1	XLOC_284605	TCONS_00285514	RFESD	rna32274	antisense	intergenic	19	convergent	downstream	no
1	XLOC_249785	TCONS_00250583	LOC106041790	rna28581	sense	intergenic	11113	same_strand	upstream	no
0	XLOC_249785	TCONS_00250583	LOC106041789	rna28580	antisense	intergenic	17690	divergent	upstream	no
1	XLOC_204518	TCONS_00205172	PLEKHA1	rna22869	sense	intergenic	7	same_strand	upstream	no
0	XLOC_204518	TCONS_00205172	PLEKHA1	rna22870	sense	intergenic	7	same_strand	upstream	no
1	XLOC_101931	TCONS_00102258	LOC106033457	rna11618	sense	genic	0	nested	intronic	no
0	XLOC_101931	TCONS_00102258	LOC106033457	rna11614	sense	genic	0	nested	intronic	no
0	XLOC_101931	TCONS_00102258	LOC106033457	rna11615	sense	genic	0	nested	intronic	no
0	XLOC_101931	TCONS_00102258	LOC106033457	rna11621	sense	genic	0	nested	intronic	no
0	XLOC_101931	TCONS_00102258	LOC106033457	rna11617	sense	genic	0	nested	intronic	no
0	XLOC_101931	TCONS_00102258	LOC106033457	rna11619	sense	genic	0	nested	intronic	no
0	XLOC_101931	TCONS_00102258	LOC106033457	rna11613	sense	genic	0	nested	intronic	no
0	XLOC_101931	TCONS_00102258	LOC106033457	rna11616	sense	genic	0	nested	intronic	no
0	XLOC_101931	TCONS_00102258	LOC106033457	rna11620	sense	genic	0	nested	intronic	no
1	XLOC_248955	TCONS_00249752	LOC106041740	rna28560	sense	intergenic	49009	same_strand	upstream	no
1	XLOC_101480	TCONS_00101805	CMC2	rna11362	sense	genic	0	nested	intronic	no
0	XLOC_101480	TCONS_00101805	CMC2	rna11363	sense	intergenic	9781	same_strand	downstream	no
0	XLOC_101480	TCONS_00101805	CMC2	rna11364	sense	intergenic	9781	same_strand	downstream	no
1	XLOC_239985	TCONS_00240756	LOC106041119	rna27436	sense	intergenic	33710	same_strand	upstream	no
1	XLOC_306638	TCONS_00307621	PTPN3	rna34749	sense	genic	0	nested	intronic	yes
0	XLOC_306638	TCONS_00307621	PTPN3	rna34750	sense	intergenic	9416	same_strand	upstream	yes
0	XLOC_306638	TCONS_00307621	PTPN3	rna34748	sense	genic	0	nested	intronic	yes
1	XLOC_000862	TCONS_00000866	ALOX5	rna340	sense	intergenic	1615	same_strand	upstream	no
0	XLOC_000862	TCONS_00000866	MARCH8	rna336	sense	intergenic	8003	same_strand	downstream	no
0	XLOC_000862	TCONS_00000866	MARCH8	rna335	sense	intergenic	8003	same_strand	downstream	no
0	XLOC_000862	TCONS_00000866	MARCH8	rna338	sense	intergenic	8003	same_strand	downstream	no
0	XLOC_000862	TCONS_00000866	MARCH8	rna334	sense	intergenic	8003	same_strand	downstream	no
0	XLOC_000862	TCONS_00000866	MARCH8	rna337	sense	intergenic	8003	same_strand	downstream	no
1	XLOC_033017	TCONS_00033113	CNOT2	rna3753	sense	genic	0	nested	intronic	no
0	XLOC_033017	TCONS_00033113	CNOT2	rna3754	sense	intergenic	9934	same_strand	upstream	no
1	XLOC_137833	TCONS_00138263	AKIRIN2	rna15773	sense	intergenic	29030	same_strand	upstream	no
0	XLOC_137833	TCONS_00138263	LOC106035389	rna15774	sense	intergenic	29429	same_strand	upstream	no
1	XLOC_317779	TCONS_00318788	MOB3A	rna35991	antisense	intergenic	3894	divergent	upstream	no
0	XLOC_317779	TCONS_00318788	MOB3A	rna35993	antisense	intergenic	8618	divergent	upstream	no
0	XLOC_317779	TCONS_00318788	AP3D1	rna35994	antisense	intergenic	4251	convergent	downstream	no
0	XLOC_317779	TCONS_00318788	MOB3A	rna35992	antisense	intergenic	5368	divergent	upstream	no
1	XLOC_103030	TCONS_00103366	COQ7	rna11643	sense	intergenic	4651	same_strand	downstream	no
0	XLOC_103030	TCONS_00103366	SYT17	rna11640	sense	intergenic	9635	same_strand	upstream	no
0	XLOC_103030	TCONS_00103366	COQ7	rna11642	sense	intergenic	4651	same_strand	downstream	no
0	XLOC_103030	TCONS_00103366	TMC7	rna11644	sense	intergenic	9634	same_strand	downstream	no
1	XLOC_017311	TCONS_00017373	LOC106038986	rna2221	sense	intergenic	13973	same_strand	downstream	no
1	XLOC_344403	TCONS_00345514	PEX5	rna39771	antisense	intergenic	1091	divergent	upstream	yes
0	XLOC_344403	TCONS_00345514	LOC106047853	rna39772	sense	intergenic	6208	same_strand	upstream	yes
1	XLOC_017326	TCONS_00017389	BBX	rna2236	sense	genic	0	nested	intronic	no
0	XLOC_017326	TCONS_00017389	BBX	rna2230	sense	genic	0	nested	intronic	no
0	XLOC_017326	TCONS_00017389	BBX	rna2235	sense	genic	0	nested	intronic	no
0	XLOC_017326	TCONS_00017389	BBX	rna2234	sense	genic	0	nested	intronic	no
0	XLOC_017326	TCONS_00017389	BBX	rna2232	sense	genic	0	nested	intronic	no
0	XLOC_017326	TCONS_00017389	BBX	rna2231	sense	genic	0	nested	intronic	no
0	XLOC_017326	TCONS_00017389	BBX	rna2233	sense	genic	0	nested	intronic	no
0	XLOC_017326	TCONS_00017389	BBX	rna2229	sense	genic	0	nested	intronic	no
0	XLOC_017326	TCONS_00017389	LOC106039032	rna2227	sense	intergenic	9863	same_strand	downstream	no
0	XLOC_017326	TCONS_00017389	BBX	rna2237	sense	genic	0	nested	intronic	no
0	XLOC_017326	TCONS_00017389	BBX	rna2228	sense	genic	0	nested	intronic	no
1	XLOC_201093	TCONS_00201726	TRNAA-AGC	rna22571	antisense	intergenic	13	convergent	downstream	no
0	XLOC_201093	TCONS_00201726	LOC106038811	rna22569	antisense	intergenic	1189	divergent	upstream	no
0	XLOC_201093	TCONS_00201726	LOC106038811	rna22570	antisense	intergenic	1190	divergent	upstream	no
1	XLOC_233932	TCONS_00234673	RPS21	rna26782	sense	intergenic	3337	same_strand	downstream	no
0	XLOC_233932	TCONS_00234673	CABLES2	rna26780	sense	intergenic	6844	same_strand	downstream	no
0	XLOC_233932	TCONS_00234673	CABLES2	rna26781	sense	intergenic	6844	same_strand	downstream	no
1	XLOC_355814	TCONS_00356982	IRF8	rna41927	antisense	intergenic	1910	convergent	downstream	no
0	XLOC_355814	TCONS_00356982	LOC106049255	rna41926	antisense	intergenic	8634	convergent	downstream	no
0	XLOC_355814	TCONS_00356982	LOC106049258	rna41928	antisense	intergenic	4488	divergent	upstream	no
0	XLOC_355814	TCONS_00356982	LOC106049259	rna41929	sense	intergenic	4490	same_strand	downstream	no
1	XLOC_054152	TCONS_00054318	LOC106030519	rna6086	sense	intergenic	39496	same_strand	upstream	no
0	XLOC_054152	TCONS_00054318	LOC106030519	rna6085	sense	intergenic	39496	same_strand	upstream	no
1	XLOC_104833	TCONS_00105181	LOC106033657	rna12042	sense	genic	0	nested	intronic	yes
0	XLOC_104833	TCONS_00105181	LOC106033656	rna12044	antisense	intergenic	6750	divergent	upstream	no
0	XLOC_104833	TCONS_00105181	LOC106033657	rna12043	sense	intergenic	1585	same_strand	upstream	yes
1	XLOC_158251	TCONS_00158768	LOC106036464	rna17793	sense	intergenic	2371	same_strand	downstream	no
0	XLOC_158251	TCONS_00158768	LOC106036462	rna17790	sense	intergenic	2958	same_strand	upstream	no
0	XLOC_158251	TCONS_00158768	LOC106036462	rna17787	sense	intergenic	2950	same_strand	upstream	no
0	XLOC_158251	TCONS_00158768	LOC106036462	rna17788	sense	intergenic	2958	same_strand	upstream	no
0	XLOC_158251	TCONS_00158768	LOC106036462	rna17792	sense	intergenic	2958	same_strand	upstream	no
0	XLOC_158251	TCONS_00158768	LOC106036462	rna17791	sense	intergenic	2958	same_strand	upstream	no
0	XLOC_158251	TCONS_00158768	LOC106036462	rna17789	sense	intergenic	2958	same_strand	upstream	no
1	XLOC_138974	TCONS_00139411	THOC7	rna15940	antisense	intergenic	8510	divergent	upstream	no
1	XLOC_007579	TCONS_00007600	POLR1A	rna1175	sense	intergenic	5111	same_strand	downstream	no
1	XLOC_156506	TCONS_00157014	FGF10	rna17516	antisense	intergenic	12602	divergent	upstream	no
0	XLOC_156506	TCONS_00157014	FGF10	rna17517	antisense	intergenic	12864	divergent	upstream	no
0	XLOC_156506	TCONS_00157014	FGF10	rna17518	antisense	intergenic	13033	divergent	upstream	no
1	XLOC_033386	TCONS_00033490	MSRB3	rna3826	sense	intergenic	3300	same_strand	downstream	yes
1	XLOC_223494	TCONS_00224194	SLC6A11	rna25189	antisense	intergenic	17769	convergent	downstream	no
0	XLOC_223494	TCONS_00224194	SLC6A11	rna25190	antisense	intergenic	17769	convergent	downstream	no
1	XLOC_122341	TCONS_00122726	PRKAR1A	rna14162	sense	intergenic	596	same_strand	upstream	no
1	XLOC_264583	TCONS_00265426	LOC106042539	rna30055	sense	intergenic	12805	same_strand	downstream	no
1	XLOC_081205	TCONS_00081449	GFRA1	rna8814	sense	genic	0	nested	intronic	no
0	XLOC_081205	TCONS_00081449	GFRA1	rna8812	sense	genic	0	nested	intronic	no
0	XLOC_081205	TCONS_00081449	GFRA1	rna8815	sense	genic	0	nested	intronic	no
0	XLOC_081205	TCONS_00081449	GFRA1	rna8813	sense	genic	0	nested	intronic	no
1	XLOC_205799	TCONS_00206466	RP1	rna22981	sense	intergenic	89882	same_strand	upstream	no
1	XLOC_203641	TCONS_00204290	PTPRN2	rna22805	sense	intergenic	3064	same_strand	downstream	no
0	XLOC_203641	TCONS_00204290	PTPRN2	rna22803	sense	intergenic	3064	same_strand	downstream	no
0	XLOC_203641	TCONS_00204290	PTPRN2	rna22804	sense	intergenic	3064	same_strand	downstream	no
1	XLOC_348414	TCONS_00349542	LRFN5	rna40541	sense	intergenic	21054	same_strand	upstream	no
1	XLOC_256641	TCONS_00257462	RPGR	rna29313	sense	genic	0	nested	intronic	no
1	XLOC_314454	TCONS_00315457	ZCCHC6	rna35340	antisense	intergenic	50659	divergent	upstream	no
0	XLOC_314454	TCONS_00315457	ZCCHC6	rna35343	antisense	intergenic	52168	divergent	upstream	no
0	XLOC_314454	TCONS_00315457	ZCCHC6	rna35342	antisense	intergenic	52168	divergent	upstream	no
0	XLOC_314454	TCONS_00315457	ZCCHC6	rna35341	antisense	intergenic	50660	divergent	upstream	no
1	XLOC_057560	TCONS_00057732	LOC106030657	rna6174	antisense	intergenic	20466	convergent	downstream	no
1	XLOC_000336	TCONS_00000339	EXOC6	rna179	sense	genic	0	nested	intronic	no
0	XLOC_000336	TCONS_00000339	EXOC6	rna181	sense	intergenic	1491	same_strand	upstream	no
0	XLOC_000336	TCONS_00000339	EXOC6	rna182	sense	intergenic	5516	same_strand	upstream	no
0	XLOC_000336	TCONS_00000339	EXOC6	rna176	sense	genic	0	nested	intronic	no
0	XLOC_000336	TCONS_00000339	EXOC6	rna180	sense	genic	0	nested	intronic	no
0	XLOC_000336	TCONS_00000339	EXOC6	rna175	sense	genic	0	nested	intronic	no
0	XLOC_000336	TCONS_00000339	EXOC6	rna174	sense	genic	0	nested	intronic	no
0	XLOC_000336	TCONS_00000339	EXOC6	rna178	sense	genic	0	nested	intronic	no
0	XLOC_000336	TCONS_00000339	EXOC6	rna177	sense	genic	0	nested	intronic	no
1	XLOC_220195	TCONS_00220893	LOC106039915	rna24918	sense	intergenic	19539	same_strand	downstream	no
1	XLOC_063383	TCONS_00063576	GNPDA2	rna6537	sense	intergenic	43833	same_strand	upstream	no
1	XLOC_345695	TCONS_00346808	LOC106048035	rna40139	sense	genic	0	nested	intronic	no
1	XLOC_203470	TCONS_00204114	INSIG1	rna22768	antisense	intergenic	30883	divergent	upstream	no
0	XLOC_203470	TCONS_00204114	LOC106038893	rna22767	sense	intergenic	34872	same_strand	upstream	no
1	XLOC_272788	TCONS_00273660	CYSLTR1	rna30874	antisense	genic	0	nested	intronic	no
0	XLOC_272788	TCONS_00273660	CYSLTR1	rna30875	antisense	intergenic	999	divergent	upstream	no
1	XLOC_034101	TCONS_00034207	SLC38A2	rna3905	antisense	intergenic	2483	convergent	downstream	no
1	XLOC_318684	TCONS_00319701	PRELP	rna36254	antisense	intergenic	2623	divergent	upstream	no
0	XLOC_318684	TCONS_00319701	LOC106045896	rna36256	antisense	intergenic	4384	convergent	downstream	no
0	XLOC_318684	TCONS_00319701	LOC106045896	rna36255	antisense	intergenic	4384	convergent	downstream	no
1	XLOC_007248	TCONS_00007268	CAMK2G	rna1093	antisense	intergenic	595	divergent	upstream	no
0	XLOC_007248	TCONS_00007268	CAMK2G	rna1088	antisense	intergenic	595	divergent	upstream	no
0	XLOC_007248	TCONS_00007268	CAMK2G	rna1091	antisense	intergenic	595	divergent	upstream	no
0	XLOC_007248	TCONS_00007268	CAMK2G	rna1094	antisense	intergenic	595	divergent	upstream	no
0	XLOC_007248	TCONS_00007268	CAMK2G	rna1087	antisense	intergenic	595	divergent	upstream	no
0	XLOC_007248	TCONS_00007268	CAMK2G	rna1092	antisense	intergenic	595	divergent	upstream	no
0	XLOC_007248	TCONS_00007268	CAMK2G	rna1089	antisense	intergenic	595	divergent	upstream	no
0	XLOC_007248	TCONS_00007268	CAMK2G	rna1090	antisense	intergenic	595	divergent	upstream	no
1	XLOC_358536	TCONS_00359715	MGAT1	rna42974	sense	intergenic	242	same_strand	downstream	no
0	XLOC_358536	TCONS_00359715	LOC106029347	rna42972	antisense	intergenic	8279	convergent	downstream	no
0	XLOC_358536	TCONS_00359715	LOC106029347	rna42973	antisense	intergenic	8279	convergent	downstream	no
1	XLOC_203981	TCONS_00204633	ADARB2	rna22832	sense	genic	0	nested	intronic	no
1	XLOC_342479	TCONS_00343583	SUCNR1	rna39485	sense	intergenic	15548	same_strand	downstream	yes
1	XLOC_097769	TCONS_00098075	ZSWIM5	rna10988	sense	genic	0	nested	intronic	no
0	XLOC_097769	TCONS_00098075	UROD	rna10990	antisense	intergenic	8644	convergent	downstream	yes
0	XLOC_097769	TCONS_00098075	UROD	rna10989	antisense	intergenic	8644	convergent	downstream	yes
0	XLOC_097769	TCONS_00098075	ZSWIM5	rna10987	sense	genic	0	nested	intronic	no
0	XLOC_097769	TCONS_00098075	UROD	rna10991	antisense	intergenic	8644	convergent	downstream	yes
0	XLOC_097769	TCONS_00098075	ZSWIM5	rna10986	sense	genic	0	nested	intronic	no
1	XLOC_025881	TCONS_00025959	FADD	rna3419	antisense	intergenic	1733	divergent	upstream	no
1	XLOC_046732	TCONS_00046878	LOC106030169	rna5313	antisense	intergenic	12242	divergent	upstream	no
0	XLOC_046732	TCONS_00046878	LOC106030169	rna5314	antisense	intergenic	12242	divergent	upstream	no
1	XLOC_202475	TCONS_00203117	IRF2BPL	rna22715	sense	intergenic	6935	same_strand	downstream	no
1	XLOC_005098	TCONS_00005108	LOC106030828	rna624	sense	intergenic	2679	same_strand	upstream	no
1	XLOC_351549	TCONS_00352686	LOC106048631	rna41079	antisense	intergenic	2863	divergent	upstream	no
0	XLOC_351549	TCONS_00352686	TRIM62	rna41078	sense	intergenic	7496	same_strand	upstream	no
0	XLOC_351549	TCONS_00352686	TRIM62	rna41076	sense	intergenic	7496	same_strand	upstream	no
0	XLOC_351549	TCONS_00352686	TRIM62	rna41077	sense	intergenic	7496	same_strand	upstream	no
1	XLOC_077495	TCONS_00077721	NOVA1	rna8386	sense	genic	0	nested	intronic	yes
0	XLOC_077495	TCONS_00077721	NOVA1	rna8387	sense	genic	0	nested	intronic	yes
0	XLOC_077495	TCONS_00077721	NOVA1	rna8385	sense	genic	0	nested	intronic	yes
0	XLOC_077495	TCONS_00077721	NOVA1	rna8384	sense	genic	0	nested	intronic	yes
1	XLOC_072998	TCONS_00073215	ADCK3	rna8148	sense	intergenic	194	same_strand	downstream	yes
0	XLOC_072998	TCONS_00073215	CDC42BPA	rna8149	antisense	intergenic	3921	convergent	downstream	no
0	XLOC_072998	TCONS_00073215	CDC42BPA	rna8153	antisense	intergenic	8402	convergent	downstream	no
0	XLOC_072998	TCONS_00073215	CDC42BPA	rna8150	antisense	intergenic	3921	convergent	downstream	no
0	XLOC_072998	TCONS_00073215	CDC42BPA	rna8151	antisense	intergenic	3921	convergent	downstream	no
0	XLOC_072998	TCONS_00073215	CDC42BPA	rna8152	antisense	intergenic	3921	convergent	downstream	no
1	XLOC_334881	TCONS_00335950	LOC106047156	rna38560	sense	intergenic	16605	same_strand	upstream	no
0	XLOC_334881	TCONS_00335950	MAPRE1	rna38559	sense	intergenic	18679	same_strand	downstream	no
1	XLOC_102521	TCONS_00102850	MAD1L1	rna11924	antisense	genic	0	nested	intronic	no
0	XLOC_102521	TCONS_00102850	MAD1L1	rna11926	antisense	genic	0	nested	intronic	no
0	XLOC_102521	TCONS_00102850	MAD1L1	rna11919	antisense	genic	0	nested	intronic	no
0	XLOC_102521	TCONS_00102850	MAD1L1	rna11931	antisense	genic	0	nested	intronic	no
0	XLOC_102521	TCONS_00102850	MAD1L1	rna11925	antisense	genic	0	nested	intronic	no
0	XLOC_102521	TCONS_00102850	MAD1L1	rna11927	antisense	genic	0	nested	intronic	no
0	XLOC_102521	TCONS_00102850	MAD1L1	rna11923	antisense	genic	0	nested	intronic	no
0	XLOC_102521	TCONS_00102850	MAD1L1	rna11934	antisense	genic	0	nested	intronic	no
0	XLOC_102521	TCONS_00102850	MAD1L1	rna11916	antisense	genic	0	nested	intronic	no
0	XLOC_102521	TCONS_00102850	MAD1L1	rna11918	antisense	genic	0	nested	intronic	no
0	XLOC_102521	TCONS_00102850	MAD1L1	rna11929	antisense	genic	0	nested	intronic	no
0	XLOC_102521	TCONS_00102850	MAD1L1	rna11911	antisense	genic	0	nested	intronic	no
0	XLOC_102521	TCONS_00102850	MAD1L1	rna11915	antisense	genic	0	nested	intronic	no
0	XLOC_102521	TCONS_00102850	MAD1L1	rna11917	antisense	genic	0	nested	intronic	no
0	XLOC_102521	TCONS_00102850	MAD1L1	rna11922	antisense	genic	0	nested	intronic	no
0	XLOC_102521	TCONS_00102850	MAD1L1	rna11932	antisense	genic	0	nested	intronic	no
0	XLOC_102521	TCONS_00102850	MAD1L1	rna11921	antisense	genic	0	nested	intronic	no
0	XLOC_102521	TCONS_00102850	MAD1L1	rna11912	antisense	genic	0	nested	intronic	no
0	XLOC_102521	TCONS_00102850	MAD1L1	rna11914	antisense	genic	0	nested	intronic	no
0	XLOC_102521	TCONS_00102850	MAD1L1	rna11920	antisense	genic	0	nested	intronic	no
0	XLOC_102521	TCONS_00102850	MAD1L1	rna11933	antisense	genic	0	nested	intronic	no
0	XLOC_102521	TCONS_00102850	MAD1L1	rna11928	antisense	genic	0	nested	intronic	no
0	XLOC_102521	TCONS_00102850	MAD1L1	rna11913	antisense	genic	0	nested	intronic	no
0	XLOC_102521	TCONS_00102850	MAD1L1	rna11930	antisense	genic	0	nested	intronic	no
1	XLOC_275228	TCONS_00276107	FBXO11	rna31239	antisense	intergenic	29156	divergent	upstream	no
0	XLOC_275228	TCONS_00276107	FBXO11	rna31240	antisense	intergenic	29156	divergent	upstream	no
1	XLOC_208415	TCONS_00209089	TBC1D1	rna23146	sense	genic	0	nested	intronic	no
0	XLOC_208415	TCONS_00209089	TBC1D1	rna23149	sense	genic	0	nested	intronic	no
0	XLOC_208415	TCONS_00209089	TBC1D1	rna23154	sense	intergenic	9434	same_strand	upstream	no
0	XLOC_208415	TCONS_00209089	TBC1D1	rna23153	sense	genic	0	nested	intronic	no
0	XLOC_208415	TCONS_00209089	TBC1D1	rna23147	sense	genic	0	nested	intronic	no
0	XLOC_208415	TCONS_00209089	TBC1D1	rna23152	sense	genic	0	nested	intronic	no
0	XLOC_208415	TCONS_00209089	TBC1D1	rna23148	sense	genic	0	nested	intronic	no
0	XLOC_208415	TCONS_00209089	TBC1D1	rna23150	sense	genic	0	nested	intronic	no
0	XLOC_208415	TCONS_00209089	TBC1D1	rna23151	sense	genic	0	nested	intronic	no
1	XLOC_318732	TCONS_00319753	LOC106045898	rna36292	sense	genic	0	nested	intronic	no
0	XLOC_318732	TCONS_00319753	LOC106045892	rna36293	sense	intergenic	9171	same_strand	upstream	no
1	XLOC_265115	TCONS_00265963	LOC106042576	rna30056	sense	genic	0	nested	intronic	no
1	XLOC_038868	TCONS_00038993	CRIM1	rna4326	antisense	intergenic	34834	divergent	upstream	yes
1	XLOC_134568	TCONS_00134985	ANGPT1	rna15643	antisense	intergenic	71251	convergent	downstream	yes
1	XLOC_280611	TCONS_00281507	RUNX1	rna31700	sense	genic	0	nested	intronic	no
1	XLOC_238614	TCONS_00239374	WBSCR27	rna27253	antisense	intergenic	13940	divergent	upstream	yes
0	XLOC_238614	TCONS_00239374	LOC106041045	rna27252	sense	intergenic	16486	same_strand	downstream	no
1	XLOC_095433	TCONS_00095732	GNPDA1	rna10247	antisense	intergenic	4138	divergent	upstream	no
0	XLOC_095433	TCONS_00095732	NDFIP1	rna10246	sense	intergenic	9537	same_strand	upstream	no
1	XLOC_277621	TCONS_00278507	ZFAT	rna31439	sense	intergenic	26088	same_strand	upstream	no
1	XLOC_358791	TCONS_00359970	LOC106029495	rna43154	sense	intergenic	2824	same_strand	upstream	no
0	XLOC_358791	TCONS_00359970	LOC106029494	rna43155	sense	intergenic	9339	same_strand	upstream	no
1	XLOC_243716	TCONS_00244498	MYBBP1A	rna28110	antisense	intergenic	5144	convergent	downstream	no
1	XLOC_050525	TCONS_00050682	LOC106030469	rna5899	antisense	intergenic	65110	convergent	downstream	no
0	XLOC_050525	TCONS_00050682	LOC106030469	rna5900	antisense	intergenic	65110	convergent	downstream	no
1	XLOC_164979	TCONS_00165513	SLC4A11	rna18604	sense	intergenic	25309	same_strand	upstream	no
1	XLOC_239566	TCONS_00240335	CLIP2	rna27324	sense	genic	0	nested	intronic	no
0	XLOC_239566	TCONS_00240335	CLIP2	rna27325	sense	genic	0	nested	intronic	no
1	XLOC_041153	TCONS_00041289	LOC106029864	rna5034	antisense	intergenic	8598	divergent	upstream	no
1	XLOC_211749	TCONS_00212428	STEAP3	rna23714	antisense	intergenic	1143	convergent	downstream	no
0	XLOC_211749	TCONS_00212428	STEAP3	rna23716	antisense	intergenic	5307	convergent	downstream	no
0	XLOC_211749	TCONS_00212428	LOC106039365	rna23719	sense	intergenic	4036	same_strand	downstream	no
0	XLOC_211749	TCONS_00212428	STEAP3	rna23715	antisense	intergenic	5307	convergent	downstream	no
0	XLOC_211749	TCONS_00212428	LOC106039365	rna23718	sense	intergenic	3825	same_strand	downstream	no
0	XLOC_211749	TCONS_00212428	STEAP3	rna23717	antisense	intergenic	5307	convergent	downstream	no
1	XLOC_116000	TCONS_00116369	MRAS	rna13410	sense	intergenic	164	same_strand	downstream	no
0	XLOC_116000	TCONS_00116369	MRAS	rna13412	sense	intergenic	164	same_strand	downstream	no
0	XLOC_116000	TCONS_00116369	TMEM177	rna13404	sense	intergenic	3241	same_strand	upstream	no
0	XLOC_116000	TCONS_00116369	MRAS	rna13411	sense	intergenic	164	same_strand	downstream	no
0	XLOC_116000	TCONS_00116369	MRAS	rna13407	sense	intergenic	164	same_strand	downstream	no
0	XLOC_116000	TCONS_00116369	MRAS	rna13409	sense	intergenic	164	same_strand	downstream	no
0	XLOC_116000	TCONS_00116369	MRAS	rna13413	sense	intergenic	164	same_strand	downstream	no
0	XLOC_116000	TCONS_00116369	MRAS	rna13408	sense	intergenic	164	same_strand	downstream	no
0	XLOC_116000	TCONS_00116369	TMEM177	rna13405	sense	intergenic	3252	same_strand	upstream	no
1	XLOC_168856	TCONS_00169404	CNOT4	rna18990	antisense	intergenic	6238	convergent	downstream	no
0	XLOC_168856	TCONS_00169404	CNOT4	rna18993	antisense	intergenic	6239	convergent	downstream	no
0	XLOC_168856	TCONS_00169404	CNOT4	rna18992	antisense	intergenic	6239	convergent	downstream	no
0	XLOC_168856	TCONS_00169404	CNOT4	rna18995	antisense	intergenic	7322	convergent	downstream	no
0	XLOC_168856	TCONS_00169404	CNOT4	rna18991	antisense	intergenic	6238	convergent	downstream	no
0	XLOC_168856	TCONS_00169404	CNOT4	rna18994	antisense	intergenic	7322	convergent	downstream	no
0	XLOC_168856	TCONS_00169404	CNOT4	rna18989	antisense	intergenic	6238	convergent	downstream	no
0	XLOC_168856	TCONS_00169404	CNOT4	rna18996	antisense	intergenic	7322	convergent	downstream	no
1	XLOC_135147	TCONS_00135568	LOC106035330	rna15566	antisense	intergenic	5396	convergent	downstream	no
0	XLOC_135147	TCONS_00135568	LOC106035330	rna15567	antisense	intergenic	5396	convergent	downstream	no
1	XLOC_082418	TCONS_00082666	PRPSAP2	rna9229	sense	intergenic	1193	same_strand	upstream	no
0	XLOC_082418	TCONS_00082666	LOC106032117	rna9228	sense	intergenic	2397	same_strand	downstream	no
0	XLOC_082418	TCONS_00082666	SHMT1	rna9227	antisense	intergenic	7005	divergent	upstream	yes
1	XLOC_140164	TCONS_00140607	MAGI1	rna15970	sense	genic	0	nested	intronic	no
0	XLOC_140164	TCONS_00140607	MAGI1	rna15971	sense	genic	0	nested	intronic	no
0	XLOC_140164	TCONS_00140607	MAGI1	rna15963	sense	genic	0	nested	intronic	no
0	XLOC_140164	TCONS_00140607	MAGI1	rna15969	sense	genic	0	nested	intronic	no
0	XLOC_140164	TCONS_00140607	MAGI1	rna15964	sense	genic	0	nested	intronic	no
0	XLOC_140164	TCONS_00140607	MAGI1	rna15972	sense	genic	0	nested	intronic	no
0	XLOC_140164	TCONS_00140607	MAGI1	rna15967	sense	genic	0	nested	intronic	no
0	XLOC_140164	TCONS_00140607	MAGI1	rna15966	sense	genic	0	nested	intronic	no
0	XLOC_140164	TCONS_00140607	MAGI1	rna15968	sense	genic	0	nested	intronic	no
0	XLOC_140164	TCONS_00140607	MAGI1	rna15973	sense	genic	0	nested	intronic	no
0	XLOC_140164	TCONS_00140607	MAGI1	rna15962	sense	genic	0	nested	intronic	no
0	XLOC_140164	TCONS_00140607	MAGI1	rna15965	sense	genic	0	nested	intronic	no
1	XLOC_032006	TCONS_00032102	TCF20	rna3594	antisense	genic	0	nested	intronic	no
0	XLOC_032006	TCONS_00032102	LOC106046234	rna3595	sense	intergenic	8437	same_strand	upstream	no
0	XLOC_032006	TCONS_00032102	TCF20	rna3596	antisense	intergenic	320	divergent	upstream	no
0	XLOC_032006	TCONS_00032102	TCF20	rna3597	antisense	intergenic	320	divergent	upstream	no
0	XLOC_032006	TCONS_00032102	TCF20	rna3598	antisense	intergenic	320	divergent	upstream	no
1	XLOC_140769	TCONS_00141217	LOC106035552	rna16100	antisense	genic	0	nested	intronic	no
1	XLOC_052706	TCONS_00052868	PTP4A1	rna5889	sense	intergenic	3282	same_strand	upstream	no
1	XLOC_098286	TCONS_00098600	TCEANC2	rna10778	sense	intergenic	368	same_strand	downstream	no
0	XLOC_098286	TCONS_00098600	CDCP2	rna10777	antisense	intergenic	3772	convergent	downstream	no
0	XLOC_098286	TCONS_00098600	TMEM59	rna10779	antisense	intergenic	7758	divergent	upstream	yes
1	XLOC_289733	TCONS_00290657	MN1	rna32681	sense	intergenic	35401	same_strand	downstream	no
1	XLOC_046506	TCONS_00046652	LOC106030330	rna5720	sense	intergenic	12079	same_strand	downstream	yes
1	XLOC_173446	TCONS_00174004	LOC106037249	rna19506	sense	genic	0	nested	intronic	no
1	XLOC_023283	TCONS_00023354	MATN4	rna2619	sense	intergenic	2145	same_strand	downstream	no
1	XLOC_074860	TCONS_00075085	PLEKHH1	rna8265	sense	genic	0	nested	intronic	no
0	XLOC_074860	TCONS_00075085	PLEKHH1	rna8270	sense	intergenic	3142	same_strand	upstream	no
0	XLOC_074860	TCONS_00075085	PLEKHH1	rna8271	sense	intergenic	3208	same_strand	upstream	no
0	XLOC_074860	TCONS_00075085	PLEKHH1	rna8269	sense	intergenic	1477	same_strand	upstream	no
0	XLOC_074860	TCONS_00075085	PLEKHH1	rna8262	sense	genic	0	nested	intronic	no
0	XLOC_074860	TCONS_00075085	PLEKHH1	rna8268	sense	intergenic	1066	same_strand	upstream	no
0	XLOC_074860	TCONS_00075085	PLEKHH1	rna8263	sense	genic	0	nested	intronic	no
0	XLOC_074860	TCONS_00075085	PLEKHH1	rna8272	sense	intergenic	6071	same_strand	upstream	no
0	XLOC_074860	TCONS_00075085	PLEKHH1	rna8266	sense	genic	0	nested	intronic	no
0	XLOC_074860	TCONS_00075085	PLEKHH1	rna8264	sense	genic	0	nested	intronic	no
0	XLOC_074860	TCONS_00075085	PLEKHH1	rna8267	sense	genic	0	nested	intronic	no
0	XLOC_074860	TCONS_00075085	LOC106031673	rna8261	antisense	intergenic	7129	divergent	upstream	no
1	XLOC_283480	TCONS_00284387	CTDSPL2	rna32111	antisense	intergenic	5133	divergent	upstream	yes
0	XLOC_283480	TCONS_00284387	CASC4	rna32110	antisense	intergenic	7139	convergent	downstream	no
1	XLOC_086788	TCONS_00087059	MARCH1	rna9601	sense	genic	0	nested	intronic	no
0	XLOC_086788	TCONS_00087059	MARCH1	rna9599	sense	genic	0	nested	intronic	no
0	XLOC_086788	TCONS_00087059	MARCH1	rna9600	sense	genic	0	nested	intronic	no
1	XLOC_335233	TCONS_00336305	MAP2K4	rna38628	sense	genic	0	nested	intronic	no
1	XLOC_289609	TCONS_00290533	LOC106043903	rna32664	antisense	genic	0	nested	intronic	no
0	XLOC_289609	TCONS_00290533	NR4A2	rna32667	antisense	intergenic	9137	divergent	upstream	no
0	XLOC_289609	TCONS_00290533	LOC106043903	rna32665	antisense	intergenic	1094	convergent	downstream	no
0	XLOC_289609	TCONS_00290533	GPD2	rna32661	sense	intergenic	8519	same_strand	upstream	no
0	XLOC_289609	TCONS_00290533	TRNAG-GCC	rna32666	antisense	intergenic	510	convergent	downstream	no
1	XLOC_209481	TCONS_00210155	EPHB1	rna23308	sense	genic	0	nested	intronic	no
1	XLOC_269176	TCONS_00270034	LOC106042758	rna30453	antisense	intergenic	52989	divergent	upstream	no
1	XLOC_292519	TCONS_00293447	NAA30	rna32930	sense	genic	0	nested	intronic	no
1	XLOC_192090	TCONS_00192701	LOC106038377	rna21680	antisense	intergenic	2595	divergent	upstream	no
0	XLOC_192090	TCONS_00192701	XCR1	rna21679	sense	intergenic	7117	same_strand	upstream	yes
1	XLOC_272701	TCONS_00273572	LOC106042959	rna30836	antisense	intergenic	88553	convergent	downstream	no
0	XLOC_272701	TCONS_00273572	LOC106042959	rna30839	antisense	intergenic	88553	convergent	downstream	no
0	XLOC_272701	TCONS_00273572	LOC106042959	rna30835	antisense	intergenic	88553	convergent	downstream	no
0	XLOC_272701	TCONS_00273572	LOC106042959	rna30837	antisense	intergenic	88553	convergent	downstream	no
0	XLOC_272701	TCONS_00273572	LOC106042959	rna30838	antisense	intergenic	88553	convergent	downstream	no
1	XLOC_034059	TCONS_00034164	SLC38A4	rna3903	antisense	intergenic	9918	divergent	upstream	yes
1	XLOC_283338	TCONS_00284242	SMAD6	rna32183	antisense	genic	0	nested	intronic	no
0	XLOC_283338	TCONS_00284242	SMAD6	rna32181	antisense	genic	0	nested	intronic	no
0	XLOC_283338	TCONS_00284242	SMAD6	rna32182	antisense	genic	0	nested	intronic	no
1	XLOC_078223	TCONS_00078452	PIDD1	rna8486	sense	intergenic	2639	same_strand	downstream	yes
1	XLOC_317845	TCONS_00318855	KANK3	rna35898	antisense	intergenic	3676	divergent	upstream	no
1	XLOC_336877	TCONS_00337955	LOC106047373	rna38959	antisense	intergenic	2577	divergent	upstream	no
1	XLOC_217418	TCONS_00218113	SIK2	rna24579	sense	genic	0	nested	intronic	no
0	XLOC_217418	TCONS_00218113	LOC106039789	rna24580	antisense	intergenic	6142	divergent	upstream	no
1	XLOC_231815	TCONS_00232539	KIRREL3	rna26286	antisense	intergenic	37926	divergent	upstream	no
1	XLOC_027725	TCONS_00027813	C1QTNF4	rna3243	sense	genic	0	nested	intronic	no
0	XLOC_027725	TCONS_00027813	C1QTNF4	rna3239	sense	genic	0	nested	intronic	no
1	XLOC_322483	TCONS_00323510	FRMD4A	rna36818	antisense	intergenic	25592	divergent	upstream	no
1	XLOC_325284	TCONS_00326320	ADCY8	rna37156	sense	intergenic	67236	same_strand	upstream	no
0	XLOC_325284	TCONS_00326320	ADCY8	rna37157	sense	intergenic	67273	same_strand	upstream	no
1	XLOC_234826	TCONS_00235571	GALNT18	rna26865	sense	genic	0	nested	intronic	no
0	XLOC_234826	TCONS_00235571	USP47	rna26864	antisense	intergenic	8183	divergent	upstream	no
0	XLOC_234826	TCONS_00235571	USP47	rna26861	antisense	intergenic	2121	divergent	upstream	no
0	XLOC_234826	TCONS_00235571	USP47	rna26862	antisense	intergenic	2121	divergent	upstream	no
0	XLOC_234826	TCONS_00235571	USP47	rna26863	antisense	intergenic	2121	divergent	upstream	no
1	XLOC_202072	TCONS_00202713	NKX2-1	rna22586	sense	intergenic	4239	same_strand	downstream	no
1	XLOC_280338	TCONS_00281233	EFTUD1	rna31635	sense	intergenic	7146	same_strand	downstream	no
1	XLOC_282811	TCONS_00283712	LRRC7	rna32052	sense	intergenic	17576	same_strand	upstream	no
0	XLOC_282811	TCONS_00283712	LRRC7	rna32053	sense	intergenic	17577	same_strand	upstream	no
1	XLOC_331554	TCONS_00332607	USP38	rna37703	antisense	intergenic	3744	divergent	upstream	no
0	XLOC_331554	TCONS_00332607	USP38	rna37705	antisense	intergenic	8222	divergent	upstream	no
0	XLOC_331554	TCONS_00332607	USP38	rna37704	antisense	intergenic	4865	divergent	upstream	no
1	XLOC_203470	TCONS_00204116	INSIG1	rna22768	antisense	intergenic	26186	divergent	upstream	no
1	XLOC_222846	TCONS_00223546	FAM126B	rna25139	sense	genic	0	nested	intronic	no
0	XLOC_222846	TCONS_00223546	FAM126B	rna25141	sense	genic	0	nested	intronic	no
0	XLOC_222846	TCONS_00223546	NDUFB3	rna25142	antisense	intergenic	6500	divergent	upstream	no
0	XLOC_222846	TCONS_00223546	FAM126B	rna25138	sense	genic	0	nested	intronic	no
1	XLOC_357804	TCONS_00358976	SLC25A37	rna42615	sense	intergenic	221	same_strand	downstream	no
1	XLOC_081876	TCONS_00082120	MFN1	rna9020	sense	genic	0	nested	intronic	no
0	XLOC_081876	TCONS_00082120	MFN1	rna9021	sense	genic	0	nested	intronic	no
1	XLOC_226962	TCONS_00227673	LOC106040366	rna25857	sense	intergenic	26997	same_strand	upstream	no
0	XLOC_226962	TCONS_00227673	LOC106040367	rna25858	sense	intergenic	27598	same_strand	downstream	no
1	XLOC_302351	TCONS_00303318	LOC106044707	rna34182	sense	intergenic	16483	same_strand	upstream	no
1	XLOC_186327	TCONS_00186927	MACF1	rna20822	antisense	genic	0	nested	intronic	no
1	XLOC_103608	TCONS_00103949	LOC106033649	rna12020	antisense	intergenic	76406	divergent	upstream	no
0	XLOC_103608	TCONS_00103949	LOC106033649	rna12021	antisense	intergenic	76581	divergent	upstream	no
1	XLOC_151539	TCONS_00152022	LOC106036069	rna17054	sense	intergenic	56739	same_strand	downstream	no
1	XLOC_216543	TCONS_00217237	LOC106039669	rna24470	sense	genic	0	nested	intronic	no
0	XLOC_216543	TCONS_00217237	LOC106039669	rna24474	sense	genic	0	nested	intronic	no
0	XLOC_216543	TCONS_00217237	LOC106039669	rna24472	sense	genic	0	nested	intronic	no
0	XLOC_216543	TCONS_00217237	LOC106039669	rna24469	sense	genic	0	nested	intronic	no
0	XLOC_216543	TCONS_00217237	LOC106039669	rna24473	sense	genic	0	nested	intronic	no
0	XLOC_216543	TCONS_00217237	LOC106039669	rna24477	sense	genic	0	nested	intronic	no
0	XLOC_216543	TCONS_00217237	LOC106039669	rna24478	sense	intergenic	5211	same_strand	upstream	no
0	XLOC_216543	TCONS_00217237	LOC106039669	rna24471	sense	genic	0	nested	intronic	no
0	XLOC_216543	TCONS_00217237	LOC106039669	rna24476	sense	genic	0	nested	intronic	no
0	XLOC_216543	TCONS_00217237	LOC106039669	rna24475	sense	genic	0	nested	intronic	no
1	XLOC_292500	TCONS_00293428	TRIM9	rna33049	sense	genic	0	nested	intronic	no
1	XLOC_038963	TCONS_00039090	CDC42EP3	rna4358	antisense	intergenic	23296	convergent	downstream	yes
0	XLOC_038963	TCONS_00039090	CDC42EP3	rna4359	antisense	intergenic	25721	convergent	downstream	yes
1	XLOC_055551	TCONS_00055717	ZFHX4	rna6217	antisense	intergenic	21284	divergent	upstream	no
1	XLOC_337155	TCONS_00338240	LOC106047369	rna38978	sense	intergenic	33893	same_strand	upstream	no
1	XLOC_027334	TCONS_00027417	ELMSAN1	rna2990	sense	genic	0	nested	intronic	no
0	XLOC_027334	TCONS_00027417	ELMSAN1	rna2991	sense	genic	0	nested	intronic	no
1	XLOC_047600	TCONS_00047747	LOC106030159	rna5494	antisense	intergenic	8957	divergent	upstream	no
1	XLOC_098244	TCONS_00098558	LOC106032991	rna10759	sense	intergenic	16353	same_strand	downstream	no
0	XLOC_098244	TCONS_00098558	LOC106032991	rna10760	sense	intergenic	16353	same_strand	downstream	no
1	XLOC_175639	TCONS_00176207	LOC106037305	rna19659	antisense	intergenic	11122	convergent	downstream	no
1	XLOC_134435	TCONS_00134851	ZFPM2	rna15623	sense	genic	0	nested	intronic	yes
0	XLOC_134435	TCONS_00134851	ZFPM2	rna15622	sense	genic	0	nested	intronic	yes
1	XLOC_036092	TCONS_00036201	LOC106048376	rna4322	sense	intergenic	36272	same_strand	upstream	no
1	XLOC_182019	TCONS_00182611	RBBP8	rna20097	antisense	intergenic	3156	convergent	downstream	yes
0	XLOC_182019	TCONS_00182611	RBBP8	rna20099	antisense	intergenic	3156	convergent	downstream	yes
1	XLOC_091061	TCONS_00091348	FYN	rna9980	sense	intergenic	34975	same_strand	upstream	no
1	XLOC_164749	TCONS_00165279	CTNNA2	rna18570	sense	genic	0	nested	intronic	no
0	XLOC_164749	TCONS_00165279	CTNNA2	rna18571	sense	genic	0	nested	intronic	no
0	XLOC_164749	TCONS_00165279	CTNNA2	rna18569	sense	genic	0	nested	intronic	no
0	XLOC_164749	TCONS_00165279	CTNNA2	rna18568	sense	genic	0	nested	intronic	no
1	XLOC_251831	TCONS_00252633	FAM175A	rna28761	sense	genic	0	nested	intronic	no
0	XLOC_251831	TCONS_00252633	FAM175A	rna28759	sense	genic	0	nested	intronic	no
0	XLOC_251831	TCONS_00252633	LOC106041932	rna28764	antisense	intergenic	2668	convergent	downstream	no
0	XLOC_251831	TCONS_00252633	FAM175A	rna28760	sense	genic	0	nested	intronic	no
0	XLOC_251831	TCONS_00252633	FAM175A	rna28762	sense	genic	0	nested	intronic	no
0	XLOC_251831	TCONS_00252633	FAM175A	rna28763	sense	genic	0	nested	intronic	no
1	XLOC_270010	TCONS_00270877	DBN1	rna30518	sense	intergenic	929	same_strand	downstream	no
0	XLOC_270010	TCONS_00270877	PDLIM7	rna30521	sense	intergenic	8302	same_strand	downstream	no
0	XLOC_270010	TCONS_00270877	PDLIM7	rna30520	sense	intergenic	8302	same_strand	downstream	no
0	XLOC_270010	TCONS_00270877	PDLIM7	rna30519	sense	intergenic	8302	same_strand	downstream	no
0	XLOC_270010	TCONS_00270877	PDLIM7	rna30524	sense	intergenic	8302	same_strand	downstream	no
0	XLOC_270010	TCONS_00270877	PDLIM7	rna30525	sense	intergenic	8302	same_strand	downstream	no
0	XLOC_270010	TCONS_00270877	PDLIM7	rna30522	sense	intergenic	8302	same_strand	downstream	no
0	XLOC_270010	TCONS_00270877	PDLIM7	rna30523	sense	intergenic	8302	same_strand	downstream	no
1	XLOC_049568	TCONS_00049722	KCNQ5	rna5804	antisense	intergenic	41827	divergent	upstream	yes
0	XLOC_049568	TCONS_00049722	KCNQ5	rna5803	antisense	intergenic	41827	divergent	upstream	yes
1	XLOC_044372	TCONS_00044513	HDAC9	rna5325	sense	genic	0	nested	intronic	no
0	XLOC_044372	TCONS_00044513	HDAC9	rna5324	sense	genic	0	nested	intronic	no
0	XLOC_044372	TCONS_00044513	HDAC9	rna5322	sense	genic	0	nested	intronic	no
0	XLOC_044372	TCONS_00044513	HDAC9	rna5321	sense	genic	0	nested	intronic	no
0	XLOC_044372	TCONS_00044513	HDAC9	rna5323	sense	genic	0	nested	intronic	no
1	XLOC_235220	TCONS_00235969	PDE3B	rna26995	sense	intergenic	326	same_strand	downstream	no
0	XLOC_235220	TCONS_00235969	RPN2	rna26996	sense	intergenic	8583	same_strand	upstream	no
1	XLOC_212978	TCONS_00213661	PDE10A	rna24087	sense	genic	0	nested	intronic	no
1	XLOC_203470	TCONS_00204115	INSIG1	rna22768	antisense	intergenic	26198	divergent	upstream	no
1	XLOC_140266	TCONS_00140711	SUCLG2	rna15982	sense	intergenic	5429	same_strand	downstream	no
1	XLOC_209644	TCONS_00210318	SLCO2A1	rna23353	sense	intergenic	10125	same_strand	upstream	no
0	XLOC_209644	TCONS_00210318	RYK	rna23352	sense	intergenic	13144	same_strand	downstream	no
1	XLOC_207263	TCONS_00207937	LOC106039012	rna23057	sense	intergenic	15971	same_strand	upstream	no
1	XLOC_333022	TCONS_00334088	RBM43	rna38104	sense	intergenic	43588	same_strand	downstream	no
0	XLOC_333022	TCONS_00334088	NMI	rna38105	sense	intergenic	48253	same_strand	downstream	yes
0	XLOC_333022	TCONS_00334088	NMI	rna38106	sense	intergenic	48253	same_strand	downstream	yes
0	XLOC_333022	TCONS_00334088	NMI	rna38109	sense	intergenic	48253	same_strand	downstream	yes
0	XLOC_333022	TCONS_00334088	NMI	rna38107	sense	intergenic	48253	same_strand	downstream	yes
0	XLOC_333022	TCONS_00334088	RND3	rna38103	sense	intergenic	48204	same_strand	upstream	no
0	XLOC_333022	TCONS_00334088	NMI	rna38108	sense	intergenic	48253	same_strand	downstream	yes
1	XLOC_024751	TCONS_00024826	NR1H3	rna3192	sense	genic	0	nested	intronic	no
0	XLOC_024751	TCONS_00024826	NR1H3	rna3195	sense	intergenic	1345	same_strand	upstream	no
0	XLOC_024751	TCONS_00024826	NR1H3	rna3194	sense	intergenic	490	same_strand	upstream	no
0	XLOC_024751	TCONS_00024826	NR1H3	rna3191	sense	genic	0	nested	intronic	no
0	XLOC_024751	TCONS_00024826	ACP2	rna3190	antisense	intergenic	2397	divergent	upstream	no
0	XLOC_024751	TCONS_00024826	NR1H3	rna3193	sense	intergenic	470	same_strand	upstream	no
1	XLOC_092425	TCONS_00092716	NT5DC1	rna9959	sense	genic	0	nested	intronic	no
0	XLOC_092425	TCONS_00092716	COL10A1	rna9962	antisense	intergenic	93	divergent	upstream	no
0	XLOC_092425	TCONS_00092716	NT5DC1	rna9958	sense	genic	0	nested	intronic	no
1	XLOC_067899	TCONS_00068101	HIPK2	rna7061	sense	genic	0	nested	intronic	no
1	XLOC_082336	TCONS_00082583	WIPI2	rna9137	sense	intergenic	2982	same_strand	downstream	no
0	XLOC_082336	TCONS_00082583	SLC29A4	rna9138	sense	intergenic	5347	same_strand	upstream	no
1	XLOC_242429	TCONS_00243208	LOC106041242	rna27604	sense	genic	0	nested	intronic	no
0	XLOC_242429	TCONS_00243208	HPGDS	rna27606	antisense	intergenic	5016	divergent	upstream	no
0	XLOC_242429	TCONS_00243208	LOC106041242	rna27605	sense	genic	0	nested	intronic	no
1	XLOC_247789	TCONS_00248579	LOC106041719	rna28478	antisense	intergenic	2438	divergent	upstream	no
1	XLOC_130750	TCONS_00131158	ELF1	rna15209	antisense	intergenic	7144	divergent	upstream	yes
1	XLOC_112127	TCONS_00112491	GRM5	rna13213	sense	genic	0	nested	intronic	no
0	XLOC_112127	TCONS_00112491	GRM5	rna13215	sense	genic	0	nested	intronic	no
0	XLOC_112127	TCONS_00112491	GRM5	rna13214	sense	genic	0	nested	intronic	no
1	XLOC_027018	TCONS_00027099	LOC106042113	rna2849	antisense	intergenic	3533	convergent	downstream	no
0	XLOC_027018	TCONS_00027099	LOC106042113	rna2850	antisense	intergenic	3533	convergent	downstream	no
1	XLOC_358477	TCONS_00359654	LOC106049951	rna42916	antisense	genic	0	nested	intronic	no
0	XLOC_358477	TCONS_00359654	LOC106049951	rna42917	antisense	intergenic	6039	divergent	upstream	no
1	XLOC_262736	TCONS_00263571	MYO7A	rna29788	sense	intergenic	4417	same_strand	upstream	no
1	XLOC_018767	TCONS_00018832	GBE1	rna2524	sense	intergenic	15406	same_strand	upstream	yes
0	XLOC_018767	TCONS_00018832	GBE1	rna2525	sense	intergenic	15573	same_strand	upstream	yes
0	XLOC_018767	TCONS_00018832	GBE1	rna2523	sense	intergenic	15406	same_strand	upstream	yes
1	XLOC_002528	TCONS_00002535	FAM35A	rna865	sense	genic	0	nested	intronic	no
0	XLOC_002528	TCONS_00002535	GLUD1	rna863	antisense	intergenic	9288	divergent	upstream	no
0	XLOC_002528	TCONS_00002535	FAM35A	rna870	sense	genic	0	nested	intronic	no
0	XLOC_002528	TCONS_00002535	FAM35A	rna869	sense	genic	0	nested	intronic	no
0	XLOC_002528	TCONS_00002535	FAM35A	rna867	sense	genic	0	nested	intronic	no
0	XLOC_002528	TCONS_00002535	FAM35A	rna868	sense	genic	0	nested	intronic	no
0	XLOC_002528	TCONS_00002535	FAM35A	rna864	sense	genic	0	nested	intronic	no
0	XLOC_002528	TCONS_00002535	GLUD1	rna862	antisense	intergenic	3581	divergent	upstream	no
0	XLOC_002528	TCONS_00002535	FAM35A	rna866	sense	genic	0	nested	intronic	no
1	XLOC_194169	TCONS_00194786	LOC106038467	rna21881	antisense	genic	0	nested	intronic	no
0	XLOC_194169	TCONS_00194786	LOC106038467	rna21872	antisense	genic	0	nested	intronic	no
0	XLOC_194169	TCONS_00194786	LOC106038467	rna21874	antisense	genic	0	nested	intronic	no
0	XLOC_194169	TCONS_00194786	LOC106038467	rna21882	antisense	genic	0	nested	intronic	no
0	XLOC_194169	TCONS_00194786	LOC106038467	rna21876	antisense	genic	0	nested	intronic	no
0	XLOC_194169	TCONS_00194786	LOC106038467	rna21879	antisense	genic	0	nested	intronic	no
0	XLOC_194169	TCONS_00194786	LOC106038467	rna21880	antisense	genic	0	nested	intronic	no
0	XLOC_194169	TCONS_00194786	LOC106038467	rna21875	antisense	genic	0	nested	intronic	no
0	XLOC_194169	TCONS_00194786	LOC106038468	rna21885	antisense	intergenic	3550	convergent	downstream	no
0	XLOC_194169	TCONS_00194786	LOC106038467	rna21883	antisense	genic	0	nested	intronic	no
0	XLOC_194169	TCONS_00194786	LOC106038467	rna21871	antisense	genic	0	nested	intronic	no
0	XLOC_194169	TCONS_00194786	LOC106038467	rna21877	antisense	genic	0	nested	intronic	no
0	XLOC_194169	TCONS_00194786	LOC106038467	rna21873	antisense	genic	0	nested	intronic	no
0	XLOC_194169	TCONS_00194786	LOC106038467	rna21878	antisense	genic	0	nested	intronic	no
0	XLOC_194169	TCONS_00194786	LOC106038467	rna21884	antisense	genic	0	nested	intronic	no
1	XLOC_348536	TCONS_00349664	LRFN5	rna40541	antisense	intergenic	20969	divergent	upstream	no
1	XLOC_310639	TCONS_00311632	CTXN3	rna35102	sense	intergenic	879	same_strand	downstream	no
0	XLOC_310639	TCONS_00311632	CTXN3	rna35096	sense	intergenic	879	same_strand	downstream	no
0	XLOC_310639	TCONS_00311632	CTXN3	rna35098	sense	intergenic	879	same_strand	downstream	no
0	XLOC_310639	TCONS_00311632	CTXN3	rna35104	sense	intergenic	879	same_strand	downstream	no
0	XLOC_310639	TCONS_00311632	CTXN3	rna35100	sense	intergenic	879	same_strand	downstream	no
0	XLOC_310639	TCONS_00311632	CTXN3	rna35099	sense	intergenic	879	same_strand	downstream	no
0	XLOC_310639	TCONS_00311632	CTXN3	rna35095	sense	intergenic	879	same_strand	downstream	no
0	XLOC_310639	TCONS_00311632	CTXN3	rna35097	sense	intergenic	879	same_strand	downstream	no
0	XLOC_310639	TCONS_00311632	CTXN3	rna35101	sense	intergenic	879	same_strand	downstream	no
0	XLOC_310639	TCONS_00311632	CTXN3	rna35103	sense	intergenic	879	same_strand	downstream	no
1	XLOC_201873	TCONS_00202509	LOC106038847	rna22550	sense	genic	0	nested	intronic	no
0	XLOC_201873	TCONS_00202509	LOC106038847	rna22552	sense	intergenic	59	same_strand	upstream	no
0	XLOC_201873	TCONS_00202509	LOC106038847	rna22553	sense	intergenic	59	same_strand	upstream	no
0	XLOC_201873	TCONS_00202509	LOC106038847	rna22551	sense	intergenic	59	same_strand	upstream	no
0	XLOC_201873	TCONS_00202509	LOC106038849	rna22556	sense	intergenic	8129	same_strand	downstream	no
1	XLOC_147749	TCONS_00148222	BTBD11	rna16680	sense	genic	0	nested	intronic	no
0	XLOC_147749	TCONS_00148222	BTBD11	rna16681	sense	genic	0	nested	intronic	no
0	XLOC_147749	TCONS_00148222	BTBD11	rna16679	sense	genic	0	nested	intronic	no
1	XLOC_300619	TCONS_00301581	ARV1	rna33969	antisense	intergenic	37	convergent	downstream	no
1	XLOC_098310	TCONS_00098624	GLIS1	rna10788	antisense	genic	0	nested	intronic	no
0	XLOC_098310	TCONS_00098624	GLIS1	rna10789	antisense	genic	0	nested	intronic	no
0	XLOC_098310	TCONS_00098624	GLIS1	rna10787	antisense	genic	0	nested	intronic	no
0	XLOC_098310	TCONS_00098624	GLIS1	rna10790	antisense	genic	0	nested	intronic	no
1	XLOC_158023	TCONS_00158540	IGF1R	rna17905	antisense	intergenic	28062	divergent	upstream	no
1	XLOC_154012	TCONS_00154512	LOC106036235	rna17443	sense	genic	0	nested	intronic	no
0	XLOC_154012	TCONS_00154512	LOC106036235	rna17444	sense	genic	0	nested	intronic	no
1	XLOC_293038	TCONS_00293969	STKLD1	rna33144	antisense	intergenic	1482	divergent	upstream	no
0	XLOC_293038	TCONS_00293969	STKLD1	rna33146	antisense	intergenic	1482	divergent	upstream	no
0	XLOC_293038	TCONS_00293969	SURF4	rna33143	sense	intergenic	5936	same_strand	upstream	no
0	XLOC_293038	TCONS_00293969	STKLD1	rna33145	antisense	intergenic	1482	divergent	upstream	no
1	XLOC_238757	TCONS_00239522	AUTS2	rna27274	antisense	genic	0	nested	intronic	no
1	XLOC_186416	TCONS_00187016	LOC106038019	rna20911	sense	intergenic	2752	same_strand	upstream	no
0	XLOC_186416	TCONS_00187016	LOC106038019	rna20912	sense	intergenic	2765	same_strand	upstream	no
0	XLOC_186416	TCONS_00187016	LOC106038019	rna20913	sense	intergenic	2939	same_strand	upstream	no
0	XLOC_186416	TCONS_00187016	LOC106038019	rna20910	sense	intergenic	2752	same_strand	upstream	no
1	XLOC_329321	TCONS_00330365	SPIRE2	rna37436	sense	intergenic	2171	same_strand	downstream	no
1	XLOC_321958	TCONS_00322985	LOC106046106	rna36677	antisense	intergenic	8387	convergent	downstream	no
0	XLOC_321958	TCONS_00322985	LOC106046106	rna36676	antisense	intergenic	8387	convergent	downstream	no
1	XLOC_171860	TCONS_00172411	PNPLA7	rna19207	antisense	intergenic	3632	convergent	downstream	no
0	XLOC_171860	TCONS_00172411	NSMF	rna19200	antisense	intergenic	8487	divergent	upstream	yes
0	XLOC_171860	TCONS_00172411	NSMF	rna19205	antisense	intergenic	8487	divergent	upstream	yes
0	XLOC_171860	TCONS_00172411	NSMF	rna19202	antisense	intergenic	8487	divergent	upstream	yes
0	XLOC_171860	TCONS_00172411	NSMF	rna19204	antisense	intergenic	8487	divergent	upstream	yes
0	XLOC_171860	TCONS_00172411	NSMF	rna19203	antisense	intergenic	8487	divergent	upstream	yes
0	XLOC_171860	TCONS_00172411	NSMF	rna19201	antisense	intergenic	8487	divergent	upstream	yes
0	XLOC_171860	TCONS_00172411	NSMF	rna19206	antisense	intergenic	8487	divergent	upstream	yes
1	XLOC_074222	TCONS_00074441	SPATA17	rna8092	sense	intergenic	58732	same_strand	downstream	no
1	XLOC_257437	TCONS_00258261	LOC106042171	rna29348	antisense	intergenic	213	convergent	downstream	no
0	XLOC_257437	TCONS_00258261	LOC106042207	rna29345	antisense	intergenic	1650	divergent	upstream	no
0	XLOC_257437	TCONS_00258261	LOC106042207	rna29347	antisense	intergenic	1650	divergent	upstream	no
0	XLOC_257437	TCONS_00258261	ZC3H3	rna29349	sense	intergenic	3047	same_strand	upstream	no
0	XLOC_257437	TCONS_00258261	LOC106042207	rna29346	antisense	intergenic	1650	divergent	upstream	no
1	XLOC_217799	TCONS_00218496	LOC106039708	rna24512	antisense	genic	0	nested	intronic	no
1	XLOC_288870	TCONS_00289788	DNAH5	rna32616	sense	intergenic	51455	same_strand	upstream	no
1	XLOC_332700	TCONS_00333766	USP32	rna38044	sense	genic	0	nested	intronic	no
0	XLOC_332700	TCONS_00333766	LOC106046844	rna38042	sense	intergenic	8368	same_strand	downstream	no
0	XLOC_332700	TCONS_00333766	LOC106046844	rna38043	sense	intergenic	8368	same_strand	downstream	no
1	XLOC_106209	TCONS_00106563	ANO3	rna12497	sense	genic	0	nested	intronic	yes
0	XLOC_106209	TCONS_00106563	MUC15	rna12498	antisense	intergenic	6176	convergent	downstream	no
1	XLOC_262084	TCONS_00262915	WDR36	rna29653	sense	intergenic	2453	same_strand	downstream	no
0	XLOC_262084	TCONS_00262915	WDR36	rna29652	sense	intergenic	2453	same_strand	downstream	no
1	XLOC_281382	TCONS_00282279	BACH1	rna31789	sense	intergenic	3606	same_strand	downstream	no
1	XLOC_203428	TCONS_00204072	LOC106038901	rna22846	sense	intergenic	9541	same_strand	upstream	no
1	XLOC_284556	TCONS_00285465	MCTP1	rna32262	sense	genic	0	nested	intronic	no
0	XLOC_284556	TCONS_00285465	MCTP1	rna32257	sense	genic	0	nested	intronic	no
0	XLOC_284556	TCONS_00285465	MCTP1	rna32256	sense	genic	0	nested	intronic	no
0	XLOC_284556	TCONS_00285465	MCTP1	rna32263	sense	genic	0	nested	intronic	no
0	XLOC_284556	TCONS_00285465	MCTP1	rna32258	sense	genic	0	nested	intronic	no
0	XLOC_284556	TCONS_00285465	MCTP1	rna32255	sense	genic	0	nested	intronic	no
0	XLOC_284556	TCONS_00285465	MCTP1	rna32261	sense	genic	0	nested	intronic	no
0	XLOC_284556	TCONS_00285465	MCTP1	rna32259	sense	genic	0	nested	intronic	no
0	XLOC_284556	TCONS_00285465	MCTP1	rna32260	sense	genic	0	nested	intronic	no
1	XLOC_018130	TCONS_00018194	ADPRH	rna2451	antisense	intergenic	863	divergent	upstream	yes
1	XLOC_022595	TCONS_00022665	ROBO2	rna2560	sense	genic	0	nested	intronic	yes
0	XLOC_022595	TCONS_00022665	ROBO2	rna2556	sense	genic	0	nested	intronic	yes
0	XLOC_022595	TCONS_00022665	ROBO2	rna2553	sense	genic	0	nested	intronic	yes
0	XLOC_022595	TCONS_00022665	ROBO2	rna2559	sense	genic	0	nested	intronic	yes
0	XLOC_022595	TCONS_00022665	ROBO2	rna2555	sense	genic	0	nested	intronic	yes
0	XLOC_022595	TCONS_00022665	ROBO2	rna2558	sense	genic	0	nested	intronic	yes
0	XLOC_022595	TCONS_00022665	ROBO2	rna2554	sense	genic	0	nested	intronic	yes
0	XLOC_022595	TCONS_00022665	ROBO2	rna2557	sense	genic	0	nested	intronic	yes
1	XLOC_122338	TCONS_00122721	LOC106034833	rna14160	antisense	intergenic	27	convergent	downstream	no
0	XLOC_122338	TCONS_00122721	LOC106034833	rna14159	antisense	intergenic	27	convergent	downstream	no
1	XLOC_317846	TCONS_00318858	NDUFA7	rna35899	antisense	genic	0	nested	intronic	no
0	XLOC_317846	TCONS_00318858	LOC106045707	rna35900	antisense	intergenic	5227	divergent	upstream	yes
0	XLOC_317846	TCONS_00318858	LOC106045707	rna35902	antisense	intergenic	5227	divergent	upstream	yes
0	XLOC_317846	TCONS_00318858	KANK3	rna35898	antisense	intergenic	1090	convergent	downstream	no
0	XLOC_317846	TCONS_00318858	LOC106045707	rna35901	antisense	intergenic	5227	divergent	upstream	yes
1	XLOC_232435	TCONS_00233160	ETS1	rna26290	sense	genic	0	nested	intronic	no
1	XLOC_358791	TCONS_00359972	LOC106029495	rna43154	sense	intergenic	2824	same_strand	upstream	no
0	XLOC_358791	TCONS_00359972	LOC106029494	rna43155	sense	intergenic	9339	same_strand	upstream	no
1	XLOC_113087	TCONS_00113451	ENDOD1	rna13134	sense	genic	0	nested	intronic	no
1	XLOC_259516	TCONS_00260341	LOC106042215	rna29443	sense	intergenic	4430	same_strand	upstream	no
1	XLOC_309984	TCONS_00310973	FAM219A	rna35032	sense	intergenic	1255	same_strand	downstream	no
0	XLOC_309984	TCONS_00310973	LOC106045166	rna35031	sense	intergenic	1499	same_strand	upstream	no
1	XLOC_029155	TCONS_00029247	ATF7IP	rna3565	sense	genic	0	nested	intronic	no
0	XLOC_029155	TCONS_00029247	ATF7IP	rna3564	sense	genic	0	nested	intronic	no
1	XLOC_152591	TCONS_00153083	LOC106036065	rna17081	sense	intergenic	24660	same_strand	upstream	no
1	XLOC_116409	TCONS_00116778	LOC106034313	rna13428	sense	intergenic	122	same_strand	downstream	no
0	XLOC_116409	TCONS_00116778	LOC106034431	rna13430	antisense	intergenic	2948	convergent	downstream	no
0	XLOC_116409	TCONS_00116778	LOC106034431	rna13429	antisense	intergenic	2948	convergent	downstream	no
1	XLOC_322375	TCONS_00323402	USP6NL	rna36864	sense	intergenic	2008	same_strand	upstream	no
0	XLOC_322375	TCONS_00323402	LOC106046200	rna36863	sense	intergenic	6149	same_strand	downstream	no
1	XLOC_195727	TCONS_00196352	SNTB1	rna21955	antisense	intergenic	1353	divergent	upstream	yes
1	XLOC_007672	TCONS_00007695	FGFRL1	rna1189	sense	genic	0	nested	intronic	no
0	XLOC_007672	TCONS_00007695	FGFRL1	rna1187	sense	genic	0	nested	intronic	no
0	XLOC_007672	TCONS_00007695	FGFRL1	rna1188	sense	genic	0	nested	intronic	no
1	XLOC_071113	TCONS_00071319	SPECC1L	rna7676	sense	intergenic	8332	same_strand	downstream	no
0	XLOC_071113	TCONS_00071319	SPECC1L	rna7677	sense	intergenic	8332	same_strand	downstream	no
1	XLOC_122465	TCONS_00122850	HELZ	rna14210	sense	genic	0	nested	intronic	no
1	XLOC_281126	TCONS_00282023	LOC106043453	rna31712	antisense	intergenic	34008	convergent	downstream	no
0	XLOC_281126	TCONS_00282023	LOC106043454	rna31711	sense	intergenic	38440	same_strand	upstream	no
1	XLOC_269211	TCONS_00270069	LOC106042759	rna30468	antisense	intergenic	2555	divergent	upstream	no
0	XLOC_269211	TCONS_00270069	ADRB2	rna30469	antisense	intergenic	3470	convergent	downstream	no
1	XLOC_039152	TCONS_00039284	LOC106029743	rna4412	antisense	intergenic	53286	convergent	downstream	no
0	XLOC_039152	TCONS_00039284	LOC106029743	rna4416	antisense	intergenic	58225	convergent	downstream	no
0	XLOC_039152	TCONS_00039284	LOC106029743	rna4415	antisense	intergenic	56415	convergent	downstream	no
0	XLOC_039152	TCONS_00039284	LOC106029743	rna4417	antisense	intergenic	58225	convergent	downstream	no
0	XLOC_039152	TCONS_00039284	LOC106029743	rna4411	antisense	intergenic	58225	convergent	downstream	no
0	XLOC_039152	TCONS_00039284	LOC106029743	rna4414	antisense	intergenic	53290	convergent	downstream	no
0	XLOC_039152	TCONS_00039284	LOC106029743	rna4413	antisense	intergenic	53287	convergent	downstream	no
1	XLOC_262973	TCONS_00263810	CAPN5	rna29786	antisense	intergenic	50	divergent	upstream	no
0	XLOC_262973	TCONS_00263810	LOC106042391	rna29784	antisense	intergenic	8725	convergent	downstream	no
0	XLOC_262973	TCONS_00263810	LOC106042391	rna29785	antisense	intergenic	8725	convergent	downstream	no
0	XLOC_262973	TCONS_00263810	LOC106042391	rna29783	antisense	intergenic	7645	convergent	downstream	no
0	XLOC_262973	TCONS_00263810	LOC106042391	rna29782	antisense	intergenic	7645	convergent	downstream	no
1	XLOC_228497	TCONS_00229212	PSD3	rna25966	antisense	intergenic	3556	divergent	upstream	no
1	XLOC_042065	TCONS_00042204	ADARB1	rna5294	sense	genic	0	nested	intronic	no
0	XLOC_042065	TCONS_00042204	ADARB1	rna5296	sense	genic	0	nested	intronic	no
0	XLOC_042065	TCONS_00042204	ADARB1	rna5295	sense	genic	0	nested	intronic	no
0	XLOC_042065	TCONS_00042204	ADARB1	rna5298	sense	genic	0	nested	intronic	no
0	XLOC_042065	TCONS_00042204	ADARB1	rna5297	sense	genic	0	nested	intronic	no
0	XLOC_042065	TCONS_00042204	ADARB1	rna5293	sense	genic	0	nested	intronic	no
1	XLOC_264925	TCONS_00265772	SHROOM2	rna30101	antisense	genic	0	nested	intronic	no
0	XLOC_264925	TCONS_00265772	SHROOM2	rna30102	antisense	genic	0	nested	intronic	no
0	XLOC_264925	TCONS_00265772	SHROOM2	rna30104	antisense	genic	0	nested	intronic	no
0	XLOC_264925	TCONS_00265772	SHROOM2	rna30103	antisense	genic	0	nested	intronic	no
1	XLOC_195336	TCONS_00195960	LOC106038464	rna21897	sense	intergenic	29298	same_strand	downstream	no
1	XLOC_302942	TCONS_00303910	ABHD12	rna34255	sense	intergenic	7443	same_strand	upstream	no
1	XLOC_034908	TCONS_00035016	RHOU	rna4039	antisense	intergenic	1235	divergent	upstream	no
1	XLOC_311501	TCONS_00312498	AKTIP	rna35167	antisense	intergenic	11777	divergent	upstream	no
0	XLOC_311501	TCONS_00312498	AKTIP	rna35168	antisense	intergenic	11778	divergent	upstream	no
1	XLOC_203981	TCONS_00204630	ADARB2	rna22832	sense	genic	0	nested	intronic	no
1	XLOC_317102	TCONS_00318109	MED13L	rna35657	sense	genic	0	nested	intronic	yes
1	XLOC_273559	TCONS_00274436	LOC106043029	rna30976	sense	genic	0	nested	intronic	yes
1	XLOC_233118	TCONS_00233847	LOC106040687	rna26622	antisense	intergenic	46833	divergent	upstream	no
1	XLOC_043190	TCONS_00043329	LOC106029996	rna5000	sense	intergenic	864	same_strand	upstream	yes
0	XLOC_043190	TCONS_00043329	LOC106029996	rna4999	sense	intergenic	864	same_strand	upstream	yes
0	XLOC_043190	TCONS_00043329	LOC106029996	rna5001	sense	intergenic	864	same_strand	upstream	yes
1	XLOC_178888	TCONS_00179465	LOC106037513	rna19969	sense	intergenic	148	same_strand	downstream	no
1	XLOC_289596	TCONS_00290520	GPD2	rna32662	sense	intergenic	29653	same_strand	downstream	no
0	XLOC_289596	TCONS_00290520	GPD2	rna32661	sense	intergenic	29653	same_strand	downstream	no
1	XLOC_269021	TCONS_00269879	MSH3	rna30434	antisense	intergenic	15392	convergent	downstream	no
1	XLOC_157164	TCONS_00157673	LOC106036286	rna17690	sense	intergenic	17078	same_strand	upstream	no
1	XLOC_149148	TCONS_00149624	TAB1	rna16843	antisense	intergenic	1048	divergent	upstream	no
0	XLOC_149148	TCONS_00149624	SYNGR1	rna16842	antisense	intergenic	3882	convergent	downstream	no
1	XLOC_186066	TCONS_00186666	SAT1	rna20664	antisense	intergenic	3511	convergent	downstream	no
0	XLOC_186066	TCONS_00186666	APOO	rna20668	sense	intergenic	8653	same_strand	downstream	no
0	XLOC_186066	TCONS_00186666	APOO	rna20665	sense	intergenic	8653	same_strand	downstream	no
0	XLOC_186066	TCONS_00186666	APOO	rna20667	sense	intergenic	8653	same_strand	downstream	no
0	XLOC_186066	TCONS_00186666	APOO	rna20666	sense	intergenic	8653	same_strand	downstream	no
0	XLOC_186066	TCONS_00186666	APOO	rna20669	sense	intergenic	8653	same_strand	downstream	no
1	XLOC_175639	TCONS_00176205	LOC106037305	rna19659	antisense	intergenic	11122	convergent	downstream	no
1	XLOC_133436	TCONS_00133846	STOX2	rna15453	sense	genic	0	nested	intronic	yes
0	XLOC_133436	TCONS_00133846	LOC106035144	rna15454	antisense	intergenic	17	convergent	downstream	no
1	XLOC_192505	TCONS_00193120	SPIDR	rna21797	sense	genic	0	nested	intronic	no
1	XLOC_339727	TCONS_00340819	RTN4R	rna39158	sense	intergenic	8449	same_strand	downstream	no
1	XLOC_165654	TCONS_00166189	CTDSPL	rna18711	sense	genic	0	nested	intronic	no
0	XLOC_165654	TCONS_00166189	CTDSPL	rna18712	sense	intergenic	2884	same_strand	upstream	no
1	XLOC_015095	TCONS_00015146	GSC	rna1731	antisense	genic	0	nested	intronic	no
1	XLOC_164154	TCONS_00164684	LOC106036744	rna18611	antisense	intergenic	8386	divergent	upstream	no
1	XLOC_049568	TCONS_00049723	KCNQ5	rna5804	antisense	intergenic	41880	divergent	upstream	yes
0	XLOC_049568	TCONS_00049723	KCNQ5	rna5803	antisense	intergenic	41880	divergent	upstream	yes
1	XLOC_151560	TCONS_00152043	LOC106036066	rna17055	sense	intergenic	25387	same_strand	upstream	no
1	XLOC_109262	TCONS_00109622	LOC106034058	rna13038	sense	intergenic	7800	same_strand	upstream	no
0	XLOC_109262	TCONS_00109622	LOC106034058	rna13040	sense	intergenic	7811	same_strand	upstream	no
0	XLOC_109262	TCONS_00109622	LOC106034058	rna13039	sense	intergenic	7801	same_strand	upstream	no
1	XLOC_265977	TCONS_00266828	LOC106042593	rna30198	sense	intergenic	1476	same_strand	downstream	no
0	XLOC_265977	TCONS_00266828	SLC22A18	rna30197	sense	intergenic	1769	same_strand	upstream	no
1	XLOC_213621	TCONS_00214311	LOC106039507	rna24175	sense	intergenic	16216	same_strand	downstream	no
0	XLOC_213621	TCONS_00214311	LOC106039507	rna24176	sense	intergenic	16216	same_strand	downstream	no
0	XLOC_213621	TCONS_00214311	LOC106039507	rna24177	sense	intergenic	16216	same_strand	downstream	no
1	XLOC_069450	TCONS_00069652	CRKL	rna7644	antisense	intergenic	2722	convergent	downstream	no
0	XLOC_069450	TCONS_00069652	LOC106031301	rna7643	sense	intergenic	8449	same_strand	downstream	no
1	XLOC_298270	TCONS_00299218	LOC106044494	rna33825	antisense	intergenic	13246	convergent	downstream	no
1	XLOC_213022	TCONS_00213709	PDE10A	rna24090	sense	genic	0	nested	intronic	no
0	XLOC_213022	TCONS_00213709	PDE10A	rna24091	sense	intergenic	4214	same_strand	upstream	no
0	XLOC_213022	TCONS_00213709	PDE10A	rna24089	sense	genic	0	nested	intronic	no
0	XLOC_213022	TCONS_00213709	PDE10A	rna24088	sense	genic	0	nested	intronic	no
0	XLOC_213022	TCONS_00213709	PDE10A	rna24087	sense	genic	0	nested	intronic	no
1	XLOC_282341	TCONS_00283240	CCNL1	rna31981	sense	genic	0	nested	intronic	no
0	XLOC_282341	TCONS_00283240	CCNL1	rna31980	sense	genic	0	nested	intronic	no
1	XLOC_083168	TCONS_00083424	TBL1XR1	rna8987	sense	intergenic	4554	same_strand	downstream	no
0	XLOC_083168	TCONS_00083424	TBL1XR1	rna8988	sense	intergenic	4554	same_strand	downstream	no
1	XLOC_280243	TCONS_00281136	BCL2A1	rna31592	sense	intergenic	370	same_strand	upstream	no
0	XLOC_280243	TCONS_00281136	LOC106043388	rna31591	sense	intergenic	6605	same_strand	upstream	no
1	XLOC_231038	TCONS_00231762	WNT5A	rna26193	antisense	intergenic	5976	divergent	upstream	no
0	XLOC_231038	TCONS_00231762	ERC2	rna26198	antisense	intergenic	7278	convergent	downstream	no
0	XLOC_231038	TCONS_00231762	ERC2	rna26194	antisense	intergenic	7278	convergent	downstream	no
0	XLOC_231038	TCONS_00231762	ERC2	rna26201	antisense	intergenic	7278	convergent	downstream	no
0	XLOC_231038	TCONS_00231762	ERC2	rna26203	antisense	intergenic	8148	convergent	downstream	no
0	XLOC_231038	TCONS_00231762	ERC2	rna26195	antisense	intergenic	7278	convergent	downstream	no
0	XLOC_231038	TCONS_00231762	ERC2	rna26202	antisense	intergenic	7278	convergent	downstream	no
0	XLOC_231038	TCONS_00231762	ERC2	rna26196	antisense	intergenic	7278	convergent	downstream	no
0	XLOC_231038	TCONS_00231762	ERC2	rna26200	antisense	intergenic	7278	convergent	downstream	no
0	XLOC_231038	TCONS_00231762	ERC2	rna26199	antisense	intergenic	7278	convergent	downstream	no
0	XLOC_231038	TCONS_00231762	ERC2	rna26197	antisense	intergenic	7278	convergent	downstream	no
1	XLOC_280507	TCONS_00281403	GABPB1	rna31673	sense	intergenic	2068	same_strand	upstream	no
0	XLOC_280507	TCONS_00281403	USP8	rna31674	antisense	intergenic	3008	divergent	upstream	no
0	XLOC_280507	TCONS_00281403	USP8	rna31682	antisense	intergenic	4596	divergent	upstream	no
0	XLOC_280507	TCONS_00281403	USP8	rna31676	antisense	intergenic	3008	divergent	upstream	no
0	XLOC_280507	TCONS_00281403	USP8	rna31675	antisense	intergenic	3008	divergent	upstream	no
0	XLOC_280507	TCONS_00281403	USP8	rna31680	antisense	intergenic	4302	divergent	upstream	no
0	XLOC_280507	TCONS_00281403	USP8	rna31678	antisense	intergenic	3216	divergent	upstream	no
0	XLOC_280507	TCONS_00281403	USP8	rna31681	antisense	intergenic	4595	divergent	upstream	no
0	XLOC_280507	TCONS_00281403	USP8	rna31677	antisense	intergenic	3008	divergent	upstream	no
0	XLOC_280507	TCONS_00281403	USP8	rna31679	antisense	intergenic	3332	divergent	upstream	no
1	XLOC_007627	TCONS_00007650	FGFRL1	rna1187	sense	intergenic	7877	same_strand	upstream	no
0	XLOC_007627	TCONS_00007650	FGFRL1	rna1188	sense	intergenic	8249	same_strand	upstream	no
1	XLOC_074581	TCONS_00074803	RPS6KC1	rna8118	sense	genic	0	nested	intronic	no
0	XLOC_074581	TCONS_00074803	RPS6KC1	rna8117	sense	genic	0	nested	intronic	no
0	XLOC_074581	TCONS_00074803	RPS6KC1	rna8119	sense	genic	0	nested	intronic	no
1	XLOC_198923	TCONS_00199553	ANK2	rna22257	sense	genic	0	nested	intronic	no
0	XLOC_198923	TCONS_00199553	ANK2	rna22258	sense	genic	0	nested	intronic	no
1	XLOC_289675	TCONS_00290599	KCNJ3	rna32672	sense	genic	0	nested	intronic	no
1	XLOC_146775	TCONS_00147243	SLC9A7	rna16480	sense	intergenic	2281	same_strand	downstream	no
0	XLOC_146775	TCONS_00147243	SLC9A7	rna16482	sense	intergenic	8166	same_strand	downstream	no
0	XLOC_146775	TCONS_00147243	SLC9A7	rna16481	sense	intergenic	8166	same_strand	downstream	no
0	XLOC_146775	TCONS_00147243	SLC9A7	rna16483	sense	intergenic	8166	same_strand	downstream	no
1	XLOC_159704	TCONS_00160224	NSUN2	rna18060	antisense	intergenic	19274	convergent	downstream	no
1	XLOC_148766	TCONS_00149242	LARGE	rna16705	sense	genic	0	nested	intronic	no
1	XLOC_104975	TCONS_00105327	WDR72	rna12086	sense	intergenic	34481	same_strand	downstream	no
0	XLOC_104975	TCONS_00105327	WDR72	rna12089	sense	intergenic	34482	same_strand	downstream	no
0	XLOC_104975	TCONS_00105327	WDR72	rna12087	sense	intergenic	34481	same_strand	downstream	no
0	XLOC_104975	TCONS_00105327	WDR72	rna12085	sense	intergenic	34481	same_strand	downstream	no
0	XLOC_104975	TCONS_00105327	WDR72	rna12090	sense	intergenic	34482	same_strand	downstream	no
0	XLOC_104975	TCONS_00105327	WDR72	rna12091	sense	intergenic	34483	same_strand	downstream	no
0	XLOC_104975	TCONS_00105327	WDR72	rna12088	sense	intergenic	34481	same_strand	downstream	no
1	XLOC_298937	TCONS_00299894	CPED1	rna33844	sense	genic	0	nested	intronic	yes
0	XLOC_298937	TCONS_00299894	CPED1	rna33846	sense	genic	0	nested	intronic	yes
0	XLOC_298937	TCONS_00299894	CPED1	rna33845	sense	genic	0	nested	intronic	yes
1	XLOC_085418	TCONS_00085685	SH3RF1	rna9666	antisense	intergenic	1718	divergent	upstream	no
0	XLOC_085418	TCONS_00085685	NEK1	rna9668	antisense	intergenic	2328	convergent	downstream	no
0	XLOC_085418	TCONS_00085685	NEK1	rna9676	antisense	intergenic	2328	convergent	downstream	no
0	XLOC_085418	TCONS_00085685	SH3RF1	rna9665	antisense	intergenic	1720	divergent	upstream	no
0	XLOC_085418	TCONS_00085685	NEK1	rna9669	antisense	intergenic	2328	convergent	downstream	no
0	XLOC_085418	TCONS_00085685	NEK1	rna9667	antisense	intergenic	2328	convergent	downstream	no
0	XLOC_085418	TCONS_00085685	SH3RF1	rna9660	antisense	intergenic	1720	divergent	upstream	no
0	XLOC_085418	TCONS_00085685	SH3RF1	rna9661	antisense	intergenic	1720	divergent	upstream	no
0	XLOC_085418	TCONS_00085685	NEK1	rna9674	antisense	intergenic	2328	convergent	downstream	no
0	XLOC_085418	TCONS_00085685	SH3RF1	rna9659	antisense	intergenic	1720	divergent	upstream	no
0	XLOC_085418	TCONS_00085685	SH3RF1	rna9662	antisense	intergenic	1720	divergent	upstream	no
0	XLOC_085418	TCONS_00085685	NEK1	rna9671	antisense	intergenic	2328	convergent	downstream	no
0	XLOC_085418	TCONS_00085685	SH3RF1	rna9663	antisense	intergenic	1722	divergent	upstream	no
0	XLOC_085418	TCONS_00085685	NEK1	rna9675	antisense	intergenic	2328	convergent	downstream	no
0	XLOC_085418	TCONS_00085685	NEK1	rna9672	antisense	intergenic	2328	convergent	downstream	no
0	XLOC_085418	TCONS_00085685	NEK1	rna9673	antisense	intergenic	2328	convergent	downstream	no
0	XLOC_085418	TCONS_00085685	NEK1	rna9670	antisense	intergenic	2328	convergent	downstream	no
1	XLOC_000847	TCONS_00000851	ZFAND4	rna333	sense	intergenic	4321	same_strand	downstream	no
0	XLOC_000847	TCONS_00000851	ZFAND4	rna332	sense	intergenic	4321	same_strand	downstream	no
1	XLOC_001852	TCONS_00001857	JMJD1C	rna719	sense	genic	0	nested	intronic	yes
1	XLOC_248253	TCONS_00249048	RNF182	rna28471	sense	genic	0	nested	intronic	no
0	XLOC_248253	TCONS_00249048	RNF182	rna28476	sense	intergenic	5604	same_strand	downstream	no
0	XLOC_248253	TCONS_00249048	RNF182	rna28473	sense	genic	0	nested	intronic	no
0	XLOC_248253	TCONS_00249048	RNF182	rna28472	sense	genic	0	nested	intronic	no
0	XLOC_248253	TCONS_00249048	RNF182	rna28470	sense	genic	0	nested	intronic	no
0	XLOC_248253	TCONS_00249048	CD83	rna28475	antisense	intergenic	4143	divergent	upstream	yes
1	XLOC_027781	TCONS_00027869	LOC106043958	rna3269	sense	intergenic	25799	same_strand	downstream	no
1	XLOC_232914	TCONS_00233641	RAB14	rna26527	antisense	intergenic	2933	divergent	upstream	no
0	XLOC_232914	TCONS_00233641	RAB14	rna26528	antisense	intergenic	2934	divergent	upstream	no
0	XLOC_232914	TCONS_00233641	GSN	rna26529	sense	intergenic	3286	same_strand	upstream	yes
0	XLOC_232914	TCONS_00233641	GSN	rna26531	sense	intergenic	9478	same_strand	upstream	yes
0	XLOC_232914	TCONS_00233641	GSN	rna26530	sense	intergenic	4500	same_strand	upstream	yes
1	XLOC_295110	TCONS_00296043	TMEM201	rna33460	sense	genic	0	nested	intronic	no
1	XLOC_317728	TCONS_00318736	ANGPTL4	rna35897	antisense	intergenic	9085	divergent	upstream	no
1	XLOC_192096	TCONS_00192708	LOC106038356	rna21682	antisense	intergenic	2732	divergent	upstream	no
0	XLOC_192096	TCONS_00192708	LOC106038377	rna21680	antisense	intergenic	7630	convergent	downstream	no
0	XLOC_192096	TCONS_00192708	LOC106038356	rna21683	antisense	intergenic	2734	divergent	upstream	no
0	XLOC_192096	TCONS_00192708	LOC106038357	rna21684	antisense	intergenic	2763	divergent	upstream	no
0	XLOC_192096	TCONS_00192708	LOC106038377	rna21681	antisense	intergenic	7630	convergent	downstream	no
1	XLOC_343652	TCONS_00344758	LOC106047779	rna39667	sense	intergenic	769	same_strand	upstream	no
0	XLOC_343652	TCONS_00344758	RGS8	rna39673	sense	intergenic	8947	same_strand	upstream	yes
0	XLOC_343652	TCONS_00344758	RGS8	rna39670	sense	intergenic	8947	same_strand	upstream	yes
0	XLOC_343652	TCONS_00344758	RGS8	rna39668	sense	intergenic	8947	same_strand	upstream	yes
0	XLOC_343652	TCONS_00344758	RGS8	rna39671	sense	intergenic	8947	same_strand	upstream	yes
0	XLOC_343652	TCONS_00344758	RGS8	rna39669	sense	intergenic	8947	same_strand	upstream	yes
0	XLOC_343652	TCONS_00344758	RGS8	rna39672	sense	intergenic	8947	same_strand	upstream	yes
1	XLOC_203470	TCONS_00204117	INSIG1	rna22768	antisense	intergenic	26191	divergent	upstream	no
1	XLOC_298270	TCONS_00299216	LOC106044494	rna33825	antisense	intergenic	13246	convergent	downstream	no
1	XLOC_140148	TCONS_00140590	MAGI1	rna15970	sense	genic	0	nested	intronic	no
0	XLOC_140148	TCONS_00140590	MAGI1	rna15971	sense	genic	0	nested	intronic	no
0	XLOC_140148	TCONS_00140590	MAGI1	rna15963	sense	genic	0	nested	intronic	no
0	XLOC_140148	TCONS_00140590	MAGI1	rna15969	sense	genic	0	nested	intronic	no
0	XLOC_140148	TCONS_00140590	MAGI1	rna15964	sense	genic	0	nested	intronic	no
0	XLOC_140148	TCONS_00140590	MAGI1	rna15972	sense	genic	0	nested	intronic	no
0	XLOC_140148	TCONS_00140590	MAGI1	rna15967	sense	genic	0	nested	intronic	no
0	XLOC_140148	TCONS_00140590	MAGI1	rna15966	sense	genic	0	nested	intronic	no
0	XLOC_140148	TCONS_00140590	MAGI1	rna15968	sense	genic	0	nested	intronic	no
0	XLOC_140148	TCONS_00140590	MAGI1	rna15973	sense	genic	0	nested	intronic	no
0	XLOC_140148	TCONS_00140590	MAGI1	rna15962	sense	genic	0	nested	intronic	no
0	XLOC_140148	TCONS_00140590	MAGI1	rna15965	sense	genic	0	nested	intronic	no
1	XLOC_344782	TCONS_00345895	ARID1A	rna39902	sense	intergenic	7654	same_strand	upstream	no
0	XLOC_344782	TCONS_00345895	ARID1A	rna39903	sense	intergenic	8149	same_strand	upstream	no
1	XLOC_069187	TCONS_00069389	FBRSL1	rna7498	sense	intergenic	15526	same_strand	downstream	no
0	XLOC_069187	TCONS_00069389	FBRSL1	rna7484	sense	intergenic	15526	same_strand	downstream	no
0	XLOC_069187	TCONS_00069389	CHFR	rna7505	sense	intergenic	16246	same_strand	upstream	yes
0	XLOC_069187	TCONS_00069389	FBRSL1	rna7502	sense	intergenic	15526	same_strand	downstream	no
0	XLOC_069187	TCONS_00069389	FBRSL1	rna7483	sense	intergenic	15526	same_strand	downstream	no
0	XLOC_069187	TCONS_00069389	FBRSL1	rna7478	sense	intergenic	15526	same_strand	downstream	no
0	XLOC_069187	TCONS_00069389	FBRSL1	rna7500	sense	intergenic	15526	same_strand	downstream	no
0	XLOC_069187	TCONS_00069389	FBRSL1	rna7480	sense	intergenic	15526	same_strand	downstream	no
0	XLOC_069187	TCONS_00069389	FBRSL1	rna7479	sense	intergenic	15526	same_strand	downstream	no
0	XLOC_069187	TCONS_00069389	FBRSL1	rna7492	sense	intergenic	15526	same_strand	downstream	no
0	XLOC_069187	TCONS_00069389	FBRSL1	rna7489	sense	intergenic	15526	same_strand	downstream	no
0	XLOC_069187	TCONS_00069389	FBRSL1	rna7496	sense	intergenic	15526	same_strand	downstream	no
0	XLOC_069187	TCONS_00069389	FBRSL1	rna7485	sense	intergenic	15526	same_strand	downstream	no
0	XLOC_069187	TCONS_00069389	FBRSL1	rna7491	sense	intergenic	15526	same_strand	downstream	no
0	XLOC_069187	TCONS_00069389	FBRSL1	rna7490	sense	intergenic	15526	same_strand	downstream	no
0	XLOC_069187	TCONS_00069389	FBRSL1	rna7493	sense	intergenic	15526	same_strand	downstream	no
0	XLOC_069187	TCONS_00069389	FBRSL1	rna7488	sense	intergenic	15526	same_strand	downstream	no
0	XLOC_069187	TCONS_00069389	FBRSL1	rna7487	sense	intergenic	15526	same_strand	downstream	no
0	XLOC_069187	TCONS_00069389	FBRSL1	rna7481	sense	intergenic	15526	same_strand	downstream	no
0	XLOC_069187	TCONS_00069389	FBRSL1	rna7482	sense	intergenic	15526	same_strand	downstream	no
0	XLOC_069187	TCONS_00069389	FBRSL1	rna7494	sense	intergenic	15526	same_strand	downstream	no
0	XLOC_069187	TCONS_00069389	FBRSL1	rna7499	sense	intergenic	15526	same_strand	downstream	no
0	XLOC_069187	TCONS_00069389	FBRSL1	rna7475	sense	intergenic	15526	same_strand	downstream	no
0	XLOC_069187	TCONS_00069389	FBRSL1	rna7497	sense	intergenic	15526	same_strand	downstream	no
0	XLOC_069187	TCONS_00069389	FBRSL1	rna7486	sense	intergenic	15526	same_strand	downstream	no
0	XLOC_069187	TCONS_00069389	FBRSL1	rna7501	sense	intergenic	15526	same_strand	downstream	no
0	XLOC_069187	TCONS_00069389	FBRSL1	rna7495	sense	intergenic	15526	same_strand	downstream	no
1	XLOC_076473	TCONS_00076699	SUSD6	rna8199	sense	intergenic	2356	same_strand	downstream	no
0	XLOC_076473	TCONS_00076699	SRSF5	rna8193	sense	intergenic	8209	same_strand	upstream	no
0	XLOC_076473	TCONS_00076699	SRSF5	rna8194	sense	intergenic	8209	same_strand	upstream	no
0	XLOC_076473	TCONS_00076699	LOC106031786	rna8196	sense	intergenic	3744	same_strand	upstream	no
0	XLOC_076473	TCONS_00076699	SRSF5	rna8195	sense	intergenic	8209	same_strand	upstream	no
0	XLOC_076473	TCONS_00076699	SUSD6	rna8198	sense	intergenic	2356	same_strand	downstream	no
0	XLOC_076473	TCONS_00076699	SUSD6	rna8197	sense	intergenic	2356	same_strand	downstream	no
1	XLOC_311239	TCONS_00312234	LOC106045240	rna35132	antisense	intergenic	67690	convergent	downstream	no
1	XLOC_280452	TCONS_00281347	PDE8A	rna31665	sense	genic	0	nested	intronic	no
0	XLOC_280452	TCONS_00281347	PDE8A	rna31666	sense	genic	0	nested	intronic	no
0	XLOC_280452	TCONS_00281347	PDE8A	rna31664	sense	genic	0	nested	intronic	no
0	XLOC_280452	TCONS_00281347	PDE8A	rna31667	sense	genic	0	nested	intronic	no
0	XLOC_280452	TCONS_00281347	PDE8A	rna31663	sense	genic	0	nested	intronic	no
1	XLOC_039689	TCONS_00039822	PLB1	rna4506	antisense	intergenic	3981	convergent	downstream	no
0	XLOC_039689	TCONS_00039822	PLB1	rna4509	antisense	intergenic	3981	convergent	downstream	no
0	XLOC_039689	TCONS_00039822	PLB1	rna4510	antisense	intergenic	3981	convergent	downstream	no
0	XLOC_039689	TCONS_00039822	PPP1CB	rna4512	antisense	intergenic	8485	divergent	upstream	no
0	XLOC_039689	TCONS_00039822	PLB1	rna4504	antisense	intergenic	3981	convergent	downstream	no
0	XLOC_039689	TCONS_00039822	PLB1	rna4505	antisense	intergenic	3981	convergent	downstream	no
0	XLOC_039689	TCONS_00039822	PPP1CB	rna4511	antisense	intergenic	8466	divergent	upstream	no
0	XLOC_039689	TCONS_00039822	PLB1	rna4508	antisense	intergenic	3981	convergent	downstream	no
0	XLOC_039689	TCONS_00039822	PLB1	rna4507	antisense	intergenic	3981	convergent	downstream	no
1	XLOC_073702	TCONS_00073921	LPGAT1	rna7997	sense	intergenic	419	same_strand	downstream	no
0	XLOC_073702	TCONS_00073921	LOC106031531	rna7994	antisense	intergenic	9482	convergent	downstream	no
0	XLOC_073702	TCONS_00073921	LPGAT1	rna7998	sense	intergenic	420	same_strand	downstream	no
0	XLOC_073702	TCONS_00073921	LOC106031531	rna7995	antisense	intergenic	9482	convergent	downstream	no
0	XLOC_073702	TCONS_00073921	LPGAT1	rna7996	sense	intergenic	419	same_strand	downstream	no
0	XLOC_073702	TCONS_00073921	LOC106031531	rna7993	antisense	intergenic	9482	convergent	downstream	no
1	XLOC_023549	TCONS_00023622	LOC106041481	rna2709	antisense	intergenic	3211	divergent	upstream	no
0	XLOC_023549	TCONS_00023622	LOC106041481	rna2710	antisense	intergenic	3211	divergent	upstream	no
0	XLOC_023549	TCONS_00023622	LOC106041481	rna2708	antisense	intergenic	3211	divergent	upstream	no
1	XLOC_178705	TCONS_00179280	HTR2C	rna19922	sense	genic	0	nested	intronic	no
0	XLOC_178705	TCONS_00179280	HTR2C	rna19924	sense	intergenic	9594	same_strand	upstream	no
0	XLOC_178705	TCONS_00179280	HTR2C	rna19925	sense	intergenic	9594	same_strand	upstream	no
0	XLOC_178705	TCONS_00179280	HTR2C	rna19923	sense	genic	0	nested	intronic	no
1	XLOC_209712	TCONS_00210390	UBE2G2	rna23412	sense	intergenic	870	same_strand	upstream	no
0	XLOC_209712	TCONS_00210390	LOC106039159	rna23411	sense	intergenic	3224	same_strand	downstream	no
1	XLOC_147114	TCONS_00147587	CD99	rna16545	antisense	intergenic	5224	divergent	upstream	no
0	XLOC_147114	TCONS_00147587	CD99	rna16546	antisense	intergenic	5226	divergent	upstream	no
0	XLOC_147114	TCONS_00147587	CD99	rna16544	antisense	intergenic	5224	divergent	upstream	no
0	XLOC_147114	TCONS_00147587	CD99	rna16547	antisense	intergenic	6270	divergent	upstream	no
0	XLOC_147114	TCONS_00147587	CD99	rna16543	antisense	intergenic	5224	divergent	upstream	no
1	XLOC_023322	TCONS_00023393	HNF4A	rna2640	antisense	intergenic	3186	divergent	upstream	no
0	XLOC_023322	TCONS_00023393	R3HDML	rna2641	antisense	intergenic	7195	convergent	downstream	no
0	XLOC_023322	TCONS_00023393	R3HDML	rna2642	antisense	intergenic	7195	convergent	downstream	no
1	XLOC_225129	TCONS_00225836	SPSB4	rna25654	sense	genic	0	nested	intronic	no
0	XLOC_225129	TCONS_00225836	SPSB4	rna25653	sense	intergenic	1077	same_strand	downstream	no
0	XLOC_225129	TCONS_00225836	SPSB4	rna25652	sense	genic	0	nested	intronic	no
1	XLOC_235737	TCONS_00236488	MAML3	rna27016	sense	genic	0	nested	intronic	no
0	XLOC_235737	TCONS_00236488	MAML3	rna27017	sense	genic	0	nested	intronic	no
0	XLOC_235737	TCONS_00236488	MAML3	rna27015	sense	genic	0	nested	intronic	no
1	XLOC_282364	TCONS_00283263	LOC106043524	rna31993	sense	intergenic	782	same_strand	downstream	no
0	XLOC_282364	TCONS_00283263	MME	rna31994	antisense	intergenic	4195	convergent	downstream	yes
1	XLOC_306032	TCONS_00307013	NEDD4L	rna34543	antisense	genic	0	nested	intronic	no
0	XLOC_306032	TCONS_00307013	NEDD4L	rna34540	antisense	genic	0	nested	intronic	no
0	XLOC_306032	TCONS_00307013	NEDD4L	rna34538	antisense	genic	0	nested	intronic	no
0	XLOC_306032	TCONS_00307013	NEDD4L	rna34537	antisense	genic	0	nested	intronic	no
0	XLOC_306032	TCONS_00307013	NEDD4L	rna34544	antisense	genic	0	nested	intronic	no
0	XLOC_306032	TCONS_00307013	NEDD4L	rna34546	antisense	genic	0	nested	intronic	no
0	XLOC_306032	TCONS_00307013	NEDD4L	rna34539	antisense	genic	0	nested	intronic	no
0	XLOC_306032	TCONS_00307013	NEDD4L	rna34536	antisense	genic	0	nested	intronic	no
0	XLOC_306032	TCONS_00307013	NEDD4L	rna34535	antisense	genic	0	nested	intronic	no
0	XLOC_306032	TCONS_00307013	NEDD4L	rna34545	antisense	genic	0	nested	intronic	no
0	XLOC_306032	TCONS_00307013	NEDD4L	rna34542	antisense	genic	0	nested	intronic	no
0	XLOC_306032	TCONS_00307013	NEDD4L	rna34541	antisense	genic	0	nested	intronic	no
1	XLOC_290840	TCONS_00291766	LOC106043988	rna32854	sense	genic	0	nested	intronic	no
0	XLOC_290840	TCONS_00291766	LOC106043988	rna32843	sense	genic	0	nested	intronic	no
0	XLOC_290840	TCONS_00291766	LOC106043988	rna32846	sense	genic	0	nested	intronic	no
0	XLOC_290840	TCONS_00291766	LOC106043988	rna32856	sense	intergenic	5937	same_strand	upstream	no
0	XLOC_290840	TCONS_00291766	LOC106043988	rna32842	sense	genic	0	nested	intronic	no
0	XLOC_290840	TCONS_00291766	LOC106043988	rna32849	sense	genic	0	nested	intronic	no
0	XLOC_290840	TCONS_00291766	LOC106043988	rna32857	sense	intergenic	6148	same_strand	upstream	no
0	XLOC_290840	TCONS_00291766	LOC106043988	rna32848	sense	genic	0	nested	intronic	no
0	XLOC_290840	TCONS_00291766	LOC106043988	rna32852	sense	genic	0	nested	intronic	no
0	XLOC_290840	TCONS_00291766	LOC106043988	rna32845	sense	genic	0	nested	intronic	no
0	XLOC_290840	TCONS_00291766	LOC106043988	rna32851	sense	genic	0	nested	intronic	no
0	XLOC_290840	TCONS_00291766	LOC106043988	rna32847	sense	genic	0	nested	intronic	no
0	XLOC_290840	TCONS_00291766	LOC106043988	rna32855	sense	genic	0	nested	intronic	no
0	XLOC_290840	TCONS_00291766	LOC106043988	rna32850	sense	genic	0	nested	intronic	no
0	XLOC_290840	TCONS_00291766	LOC106043988	rna32853	sense	genic	0	nested	intronic	no
0	XLOC_290840	TCONS_00291766	LOC106043988	rna32844	sense	genic	0	nested	intronic	no
1	XLOC_098178	TCONS_00098486	PPAP2B	rna10758	antisense	intergenic	43909	convergent	downstream	no
0	XLOC_098178	TCONS_00098486	PPAP2B	rna10757	antisense	intergenic	44229	convergent	downstream	no
1	XLOC_148490	TCONS_00148965	HSP90B1	rna16603	antisense	intergenic	935	convergent	downstream	no
0	XLOC_148490	TCONS_00148965	TDG	rna16605	antisense	intergenic	3905	divergent	upstream	no
0	XLOC_148490	TCONS_00148965	LOC106035806	rna16604	sense	intergenic	2224	same_strand	downstream	no
1	XLOC_007577	TCONS_00007598	REEP1	rna1169	sense	genic	0	nested	intronic	no
0	XLOC_007577	TCONS_00007598	REEP1	rna1168	sense	genic	0	nested	intronic	no
0	XLOC_007577	TCONS_00007598	REEP1	rna1170	sense	genic	0	nested	intronic	no
0	XLOC_007577	TCONS_00007598	REEP1	rna1171	sense	genic	0	nested	intronic	no
1	XLOC_000336	TCONS_00000337	EXOC6	rna179	sense	genic	0	nested	intronic	no
0	XLOC_000336	TCONS_00000337	EXOC6	rna181	sense	intergenic	1491	same_strand	upstream	no
0	XLOC_000336	TCONS_00000337	EXOC6	rna182	sense	intergenic	5516	same_strand	upstream	no
0	XLOC_000336	TCONS_00000337	EXOC6	rna176	sense	genic	0	nested	intronic	no
0	XLOC_000336	TCONS_00000337	EXOC6	rna180	sense	genic	0	nested	intronic	no
0	XLOC_000336	TCONS_00000337	EXOC6	rna175	sense	genic	0	nested	intronic	no
0	XLOC_000336	TCONS_00000337	EXOC6	rna174	sense	genic	0	nested	intronic	no
0	XLOC_000336	TCONS_00000337	EXOC6	rna178	sense	genic	0	nested	intronic	no
0	XLOC_000336	TCONS_00000337	EXOC6	rna177	sense	genic	0	nested	intronic	no
1	XLOC_175568	TCONS_00176130	SKOR2	rna19650	antisense	intergenic	56688	divergent	upstream	no
1	XLOC_020957	TCONS_00021022	LOC106037281	rna2270	sense	intergenic	26083	same_strand	upstream	no
1	XLOC_194497	TCONS_00195118	FER1L6	rna21918	antisense	genic	0	nested	intronic	no
1	XLOC_178800	TCONS_00179375	LOC106037506	rna19965	sense	intergenic	32462	same_strand	upstream	no
0	XLOC_178800	TCONS_00179375	LOC106037506	rna19964	sense	intergenic	32462	same_strand	upstream	no
1	XLOC_136489	TCONS_00136915	AKIRIN2	rna15773	antisense	intergenic	38198	divergent	upstream	no
0	XLOC_136489	TCONS_00136915	LOC106035389	rna15774	antisense	intergenic	38597	divergent	upstream	no
1	XLOC_135148	TCONS_00135569	ANKRD46	rna15570	sense	intergenic	1119	same_strand	downstream	no
0	XLOC_135148	TCONS_00135569	ANKRD46	rna15569	sense	intergenic	1119	same_strand	downstream	no
0	XLOC_135148	TCONS_00135569	LOC106035330	rna15566	antisense	intergenic	8314	convergent	downstream	no
0	XLOC_135148	TCONS_00135569	LOC106035330	rna15567	antisense	intergenic	8314	convergent	downstream	no
0	XLOC_135148	TCONS_00135569	ANKRD46	rna15568	sense	intergenic	1119	same_strand	downstream	no
1	XLOC_207457	TCONS_00208131	GGH	rna23069	sense	intergenic	1905	same_strand	downstream	yes
0	XLOC_207457	TCONS_00208131	GGH	rna23070	sense	intergenic	5737	same_strand	downstream	yes
1	XLOC_262094	TCONS_00262925	LOC106042340	rna29654	antisense	intergenic	13203	divergent	upstream	no
1	XLOC_053784	TCONS_00053950	DLGAP2	rna6009	sense	genic	0	nested	intronic	no
0	XLOC_053784	TCONS_00053950	DLGAP2	rna6008	sense	genic	0	nested	intronic	no
1	XLOC_066781	TCONS_00066981	LMO3	rna6787	antisense	genic	0	nested	intronic	no
0	XLOC_066781	TCONS_00066981	LMO3	rna6792	antisense	genic	0	nested	intronic	no
0	XLOC_066781	TCONS_00066981	LMO3	rna6788	antisense	genic	0	nested	intronic	no
0	XLOC_066781	TCONS_00066981	LMO3	rna6790	antisense	genic	0	nested	intronic	no
0	XLOC_066781	TCONS_00066981	LMO3	rna6791	antisense	genic	0	nested	intronic	no
0	XLOC_066781	TCONS_00066981	LMO3	rna6789	antisense	genic	0	nested	intronic	no
1	XLOC_137428	TCONS_00137858	LOC106035373	rna15673	antisense	intergenic	16621	divergent	upstream	no
0	XLOC_137428	TCONS_00137858	FAM46A	rna15672	sense	intergenic	19822	same_strand	upstream	no
1	XLOC_235983	TCONS_00236736	LOC106040947	rna27060	sense	intergenic	77961	same_strand	upstream	no
0	XLOC_235983	TCONS_00236736	LOC106040947	rna27061	sense	intergenic	77965	same_strand	upstream	no
1	XLOC_034172	TCONS_00034279	LOC106045491	rna3927	sense	genic	0	nested	intronic	no
1	XLOC_355550	TCONS_00356717	LOC106049244	rna41908	antisense	intergenic	10993	divergent	upstream	no
1	XLOC_287731	TCONS_00288646	RAP1GAP2	rna32433	sense	intergenic	31166	same_strand	downstream	no
1	XLOC_252918	TCONS_00253726	NR5A2	rna29023	antisense	genic	0	nested	intronic	no
1	XLOC_204787	TCONS_00205447	LOC106038960	rna22937	sense	intergenic	16710	same_strand	downstream	no
0	XLOC_204787	TCONS_00205447	LOC106038960	rna22939	sense	intergenic	18710	same_strand	downstream	no
0	XLOC_204787	TCONS_00205447	LOC106038960	rna22938	sense	intergenic	18710	same_strand	downstream	no
1	XLOC_269308	TCONS_00270166	NEURL1B	rna30482	antisense	genic	0	nested	intronic	no
1	XLOC_101573	TCONS_00101900	LOC106033340	rna11400	sense	genic	0	nested	intronic	no
1	XLOC_352838	TCONS_00353982	PCSK1	rna41370	sense	genic	0	nested	intronic	no
1	XLOC_102772	TCONS_00103105	LOC106033435	rna11538	antisense	genic	0	nested	intronic	no
0	XLOC_102772	TCONS_00103105	LOC106033435	rna11537	antisense	genic	0	nested	intronic	no
0	XLOC_102772	TCONS_00103105	LOC106033435	rna11536	antisense	genic	0	nested	intronic	no
0	XLOC_102772	TCONS_00103105	LOC106033435	rna11539	antisense	genic	0	nested	intronic	no
0	XLOC_102772	TCONS_00103105	LOC106033435	rna11540	antisense	genic	0	nested	intronic	no
1	XLOC_017283	TCONS_00017342	LOC106038986	rna2221	sense	intergenic	5482	same_strand	upstream	no
1	XLOC_118986	TCONS_00119358	NDUFA10	rna13783	sense	intergenic	41037	same_strand	downstream	no
1	XLOC_126176	TCONS_00126567	DLGAP1	rna14791	antisense	genic	0	nested	intronic	no
0	XLOC_126176	TCONS_00126567	DLGAP1	rna14792	antisense	genic	0	nested	intronic	no
0	XLOC_126176	TCONS_00126567	DLGAP1	rna14793	antisense	genic	0	nested	intronic	no
0	XLOC_126176	TCONS_00126567	DLGAP1	rna14789	antisense	genic	0	nested	intronic	no
0	XLOC_126176	TCONS_00126567	DLGAP1	rna14790	antisense	genic	0	nested	intronic	no
1	XLOC_117998	TCONS_00118370	WWC1	rna13629	sense	genic	0	nested	intronic	no
0	XLOC_117998	TCONS_00118370	LOC106034385	rna13632	antisense	intergenic	2744	divergent	upstream	no
0	XLOC_117998	TCONS_00118370	LOC106034385	rna13633	antisense	intergenic	2744	divergent	upstream	no
0	XLOC_117998	TCONS_00118370	LOC106034385	rna13635	antisense	intergenic	2744	divergent	upstream	no
0	XLOC_117998	TCONS_00118370	WWC1	rna13630	sense	intergenic	4518	same_strand	upstream	no
0	XLOC_117998	TCONS_00118370	LOC106034385	rna13636	antisense	intergenic	2744	divergent	upstream	no
0	XLOC_117998	TCONS_00118370	WWC1	rna13631	sense	intergenic	4518	same_strand	upstream	no
0	XLOC_117998	TCONS_00118370	LOC106034385	rna13634	antisense	intergenic	2744	divergent	upstream	no
1	XLOC_002518	TCONS_00002525	LDB3	rna848	sense	intergenic	10374	same_strand	downstream	no
0	XLOC_002518	TCONS_00002525	LDB3	rna841	sense	intergenic	10374	same_strand	downstream	no
0	XLOC_002518	TCONS_00002525	LDB3	rna840	sense	intergenic	10374	same_strand	downstream	no
0	XLOC_002518	TCONS_00002525	LDB3	rna849	sense	intergenic	10374	same_strand	downstream	no
0	XLOC_002518	TCONS_00002525	LDB3	rna836	sense	intergenic	10374	same_strand	downstream	no
0	XLOC_002518	TCONS_00002525	LDB3	rna839	sense	intergenic	10374	same_strand	downstream	no
0	XLOC_002518	TCONS_00002525	LDB3	rna847	sense	intergenic	10374	same_strand	downstream	no
0	XLOC_002518	TCONS_00002525	LDB3	rna844	sense	intergenic	16993	same_strand	downstream	no
0	XLOC_002518	TCONS_00002525	LDB3	rna835	sense	intergenic	10374	same_strand	downstream	no
0	XLOC_002518	TCONS_00002525	LDB3	rna842	sense	intergenic	10374	same_strand	downstream	no
0	XLOC_002518	TCONS_00002525	LDB3	rna834	sense	intergenic	10374	same_strand	downstream	no
0	XLOC_002518	TCONS_00002525	LDB3	rna838	sense	intergenic	10374	same_strand	downstream	no
0	XLOC_002518	TCONS_00002525	LDB3	rna837	sense	intergenic	10374	same_strand	downstream	no
0	XLOC_002518	TCONS_00002525	LDB3	rna845	sense	intergenic	10374	same_strand	downstream	no
0	XLOC_002518	TCONS_00002525	LDB3	rna850	sense	intergenic	10374	same_strand	downstream	no
0	XLOC_002518	TCONS_00002525	LDB3	rna851	sense	intergenic	10374	same_strand	downstream	no
0	XLOC_002518	TCONS_00002525	LDB3	rna843	sense	intergenic	10374	same_strand	downstream	no
0	XLOC_002518	TCONS_00002525	LDB3	rna846	sense	intergenic	10374	same_strand	downstream	no
1	XLOC_303674	TCONS_00304643	PTMA	rna34343	antisense	intergenic	6694	divergent	upstream	no
1	XLOC_015095	TCONS_00015144	GSC	rna1731	antisense	genic	0	nested	intronic	no
1	XLOC_306172	TCONS_00307153	UHRF1	rna34651	antisense	intergenic	703	convergent	downstream	yes
0	XLOC_306172	TCONS_00307153	KDM4B	rna34650	antisense	intergenic	4961	divergent	upstream	no
1	XLOC_350390	TCONS_00351522	ETV7	rna40760	sense	genic	0	nested	intronic	no
0	XLOC_350390	TCONS_00351522	ETV7	rna40759	sense	genic	0	nested	intronic	no
0	XLOC_350390	TCONS_00351522	KCTD20	rna40761	antisense	intergenic	8287	divergent	upstream	no
1	XLOC_195803	TCONS_00196428	MAL2	rna21985	sense	intergenic	398	same_strand	downstream	no
1	XLOC_303732	TCONS_00304706	BCL6	rna34381	antisense	intergenic	57155	divergent	upstream	no
0	XLOC_303732	TCONS_00304706	LOC106044794	rna34382	antisense	intergenic	58982	convergent	downstream	no
1	XLOC_204319	TCONS_00204973	LOC106038901	rna22846	antisense	intergenic	46033	divergent	upstream	no
1	XLOC_074096	TCONS_00074315	LYPLAL1	rna8088	sense	intergenic	86998	same_strand	upstream	no
0	XLOC_074096	TCONS_00074315	LYPLAL1	rna8085	sense	intergenic	87902	same_strand	upstream	no
0	XLOC_074096	TCONS_00074315	LYPLAL1	rna8087	sense	intergenic	86998	same_strand	upstream	no
0	XLOC_074096	TCONS_00074315	LYPLAL1	rna8089	sense	intergenic	88266	same_strand	upstream	no
0	XLOC_074096	TCONS_00074315	LYPLAL1	rna8086	sense	intergenic	86998	same_strand	upstream	no
1	XLOC_119923	TCONS_00120300	LOC106034554	rna14043	sense	genic	0	nested	intronic	no
1	XLOC_333223	TCONS_00334290	HEXIM1	rna38179	antisense	intergenic	1113	convergent	downstream	no
0	XLOC_333223	TCONS_00334290	LOC106046900	rna38178	antisense	intergenic	7888	divergent	upstream	yes
0	XLOC_333223	TCONS_00334290	ACBD4	rna38180	antisense	intergenic	4720	convergent	downstream	no
0	XLOC_333223	TCONS_00334290	LOC106046900	rna38176	antisense	intergenic	7327	divergent	upstream	yes
0	XLOC_333223	TCONS_00334290	LOC106046900	rna38177	antisense	intergenic	7887	divergent	upstream	yes
1	XLOC_128797	TCONS_00129199	WDFY2	rna15009	antisense	intergenic	252	divergent	upstream	no
0	XLOC_128797	TCONS_00129199	INTS6	rna15012	sense	intergenic	8663	same_strand	upstream	no
0	XLOC_128797	TCONS_00129199	INTS6	rna15011	sense	intergenic	8663	same_strand	upstream	no
1	XLOC_084818	TCONS_00085076	LOC106032298	rna9564	antisense	intergenic	7019	divergent	upstream	no
0	XLOC_084818	TCONS_00085076	LOC106032298	rna9565	antisense	intergenic	7019	divergent	upstream	no
0	XLOC_084818	TCONS_00085076	LOC106032298	rna9566	antisense	intergenic	7019	divergent	upstream	no
1	XLOC_149148	TCONS_00149625	TAB1	rna16843	antisense	intergenic	328	divergent	upstream	no
0	XLOC_149148	TCONS_00149625	SYNGR1	rna16842	antisense	intergenic	3882	convergent	downstream	no
1	XLOC_090171	TCONS_00090452	ALDH8A1	rna9877	sense	intergenic	58353	same_strand	downstream	yes
1	XLOC_303710	TCONS_00304679	MASP1	rna34377	antisense	genic	0	nested	intronic	no
1	XLOC_168385	TCONS_00168930	MRPL42	rna18866	antisense	intergenic	4476	convergent	downstream	no
0	XLOC_168385	TCONS_00168930	MRPL42	rna18864	antisense	intergenic	4476	convergent	downstream	no
0	XLOC_168385	TCONS_00168930	MRPL42	rna18865	antisense	intergenic	4476	convergent	downstream	no
0	XLOC_168385	TCONS_00168930	MRPL42	rna18863	antisense	intergenic	6001	convergent	downstream	no
1	XLOC_235682	TCONS_00236432	LOC106040929	rna26994	sense	genic	0	nested	intronic	no
0	XLOC_235682	TCONS_00236432	PDE3B	rna26995	antisense	intergenic	1733	divergent	upstream	no
1	XLOC_329467	TCONS_00330512	ANKRD11	rna37425	sense	intergenic	173	same_strand	upstream	no
0	XLOC_329467	TCONS_00330512	ANKRD11	rna37426	sense	intergenic	174	same_strand	upstream	no
1	XLOC_305765	TCONS_00306746	WDR7	rna34524	sense	genic	0	nested	intronic	no
0	XLOC_305765	TCONS_00306746	WDR7	rna34525	sense	genic	0	nested	intronic	no
0	XLOC_305765	TCONS_00306746	WDR7	rna34526	sense	genic	0	nested	intronic	no
1	XLOC_038961	TCONS_00039088	CDC42EP3	rna4358	antisense	intergenic	14515	convergent	downstream	yes
0	XLOC_038961	TCONS_00039088	CDC42EP3	rna4359	antisense	intergenic	16940	convergent	downstream	yes
1	XLOC_203981	TCONS_00204631	ADARB2	rna22832	sense	genic	0	nested	intronic	no
1	XLOC_033440	TCONS_00033544	RASSF3	rna3838	sense	intergenic	807	same_strand	downstream	no
0	XLOC_033440	TCONS_00033544	RASSF3	rna3839	sense	intergenic	807	same_strand	downstream	no
0	XLOC_033440	TCONS_00033544	GNS	rna3836	antisense	intergenic	9682	convergent	downstream	no
0	XLOC_033440	TCONS_00033544	RASSF3	rna3840	sense	intergenic	807	same_strand	downstream	no
0	XLOC_033440	TCONS_00033544	LOC106045444	gene1753	sense	intergenic	2979	same_strand	upstream	no
0	XLOC_033440	TCONS_00033544	RASSF3	rna3837	sense	intergenic	807	same_strand	downstream	no
1	XLOC_358847	TCONS_00360030	LOC106029550	rna43219	sense	intergenic	4918	same_strand	upstream	no
0	XLOC_358847	TCONS_00360030	LOC106029551	rna43220	sense	intergenic	6592	same_strand	upstream	no
0	XLOC_358847	TCONS_00360030	LOC106029551	rna43221	sense	intergenic	6592	same_strand	upstream	no
1	XLOC_358514	TCONS_00359691	KDM2A	rna42937	sense	intergenic	7907	same_strand	upstream	no
0	XLOC_358514	TCONS_00359691	KDM2A	rna42938	sense	intergenic	7908	same_strand	upstream	no
1	XLOC_073915	TCONS_00074134	DUSP10	rna8068	antisense	intergenic	1849	divergent	upstream	no
1	XLOC_228497	TCONS_00229211	PSD3	rna25966	antisense	intergenic	3575	divergent	upstream	no
1	XLOC_088177	TCONS_00088455	AKAP7	rna9841	sense	intergenic	17752	same_strand	downstream	no
0	XLOC_088177	TCONS_00088455	AKAP7	rna9842	sense	intergenic	17760	same_strand	downstream	no
0	XLOC_088177	TCONS_00088455	AKAP7	rna9843	sense	intergenic	19063	same_strand	downstream	no
1	XLOC_164437	TCONS_00164967	CNTN4	rna18551	sense	genic	0	nested	intronic	no
0	XLOC_164437	TCONS_00164967	CNTN4	rna18552	sense	genic	0	nested	intronic	no
1	XLOC_045118	TCONS_00045262	HOXA13	rna5484	antisense	intergenic	2941	divergent	upstream	no
1	XLOC_143318	TCONS_00143773	ANKRD55	rna16260	antisense	intergenic	64490	divergent	upstream	no
0	XLOC_143318	TCONS_00143773	ANKRD55	rna16259	antisense	intergenic	64490	divergent	upstream	no
1	XLOC_172020	TCONS_00172572	EXD3	rna19258	sense	genic	0	nested	intronic	no
0	XLOC_172020	TCONS_00172572	EXD3	rna19263	sense	genic	0	nested	intronic	no
0	XLOC_172020	TCONS_00172572	EXD3	rna19256	sense	genic	0	nested	intronic	no
0	XLOC_172020	TCONS_00172572	EXD3	rna19255	sense	genic	0	nested	intronic	no
0	XLOC_172020	TCONS_00172572	EXD3	rna19264	sense	genic	0	nested	intronic	no
0	XLOC_172020	TCONS_00172572	EXD3	rna19265	sense	genic	0	nested	intronic	no
0	XLOC_172020	TCONS_00172572	EXD3	rna19267	sense	genic	0	nested	intronic	no
0	XLOC_172020	TCONS_00172572	EXD3	rna19254	sense	genic	0	nested	intronic	no
0	XLOC_172020	TCONS_00172572	EXD3	rna19253	sense	genic	0	nested	intronic	no
0	XLOC_172020	TCONS_00172572	EXD3	rna19266	sense	genic	0	nested	intronic	no
0	XLOC_172020	TCONS_00172572	EXD3	rna19257	sense	genic	0	nested	intronic	no
0	XLOC_172020	TCONS_00172572	EXD3	rna19259	sense	genic	0	nested	intronic	no
0	XLOC_172020	TCONS_00172572	EXD3	rna19261	sense	genic	0	nested	intronic	no
0	XLOC_172020	TCONS_00172572	EXD3	rna19260	sense	genic	0	nested	intronic	no
0	XLOC_172020	TCONS_00172572	EXD3	rna19268	sense	genic	0	nested	intronic	no
0	XLOC_172020	TCONS_00172572	EXD3	rna19262	sense	genic	0	nested	intronic	no
1	XLOC_234442	TCONS_00235185	LOC106040847	rna26797	antisense	intergenic	1046	convergent	downstream	no
0	XLOC_234442	TCONS_00235185	TAF4	rna26798	antisense	intergenic	2939	divergent	upstream	no
1	XLOC_088810	TCONS_00089089	MCM9	rna9688	sense	intergenic	86757	same_strand	downstream	no
1	XLOC_135147	TCONS_00135567	LOC106035330	rna15566	antisense	intergenic	4615	convergent	downstream	no
0	XLOC_135147	TCONS_00135567	LOC106035330	rna15567	antisense	intergenic	4615	convergent	downstream	no
1	XLOC_147114	TCONS_00147584	CD99	rna16545	antisense	intergenic	7187	divergent	upstream	no
0	XLOC_147114	TCONS_00147584	CD99	rna16546	antisense	intergenic	7189	divergent	upstream	no
0	XLOC_147114	TCONS_00147584	CD99	rna16544	antisense	intergenic	7187	divergent	upstream	no
0	XLOC_147114	TCONS_00147584	CD99	rna16547	antisense	intergenic	8233	divergent	upstream	no
0	XLOC_147114	TCONS_00147584	CD99	rna16543	antisense	intergenic	7187	divergent	upstream	no
1	XLOC_179544	TCONS_00180122	UMAD1	rna20020	antisense	intergenic	6366	convergent	downstream	no
0	XLOC_179544	TCONS_00180122	UMAD1	rna20021	antisense	intergenic	6367	convergent	downstream	no
0	XLOC_179544	TCONS_00180122	UMAD1	rna20022	antisense	intergenic	6367	convergent	downstream	no
1	XLOC_203981	TCONS_00204632	ADARB2	rna22832	sense	genic	0	nested	intronic	no
1	XLOC_126807	TCONS_00127198	CEP192	rna14934	sense	intergenic	14100	same_strand	downstream	no
1	XLOC_354526	TCONS_00355687	LOC106049068	rna41685	sense	intergenic	3416	same_strand	downstream	no
0	XLOC_354526	TCONS_00355687	ANP32E	rna41683	sense	intergenic	5916	same_strand	upstream	no
0	XLOC_354526	TCONS_00355687	ANP32E	rna41684	sense	intergenic	5916	same_strand	upstream	no
1	XLOC_062659	TCONS_00062845	TRIB2	rna6474	antisense	intergenic	1776	divergent	upstream	no
1	XLOC_031612	TCONS_00031708	DNAJB9	rna4019	sense	intergenic	8812	same_strand	downstream	no
0	XLOC_031612	TCONS_00031708	DNAJB9	rna4018	sense	intergenic	8812	same_strand	downstream	no
0	XLOC_031612	TCONS_00031708	DNAJB9	rna4020	sense	intergenic	8812	same_strand	downstream	no
1	XLOC_343345	TCONS_00344451	LOC106047761	rna39614	sense	genic	0	nested	intronic	no
0	XLOC_343345	TCONS_00344451	LOC106047761	rna39617	sense	intergenic	7475	same_strand	downstream	no
0	XLOC_343345	TCONS_00344451	LOC106047761	rna39618	sense	intergenic	7475	same_strand	downstream	no
0	XLOC_343345	TCONS_00344451	LOC106047761	rna39616	sense	intergenic	5825	same_strand	downstream	no
0	XLOC_343345	TCONS_00344451	LOC106047761	rna39613	sense	genic	0	nested	intronic	no
0	XLOC_343345	TCONS_00344451	LOC106047761	rna39615	sense	genic	0	nested	intronic	no
1	XLOC_262290	TCONS_00263124	FBXL17	rna29679	antisense	intergenic	3095	convergent	downstream	no
1	XLOC_143808	TCONS_00144264	LOC106035592	gene7408	sense	intergenic	34960	same_strand	downstream	no
1	XLOC_246103	TCONS_00246890	SEC22B	rna28236	antisense	intergenic	6024	divergent	upstream	yes
1	XLOC_172118	TCONS_00172671	NAIF1	rna19070	sense	intergenic	127	same_strand	downstream	no
0	XLOC_172118	TCONS_00172671	SLC25A25	rna19071	antisense	intergenic	3254	divergent	upstream	no
0	XLOC_172118	TCONS_00172671	SLC25A25	rna19072	antisense	intergenic	3254	divergent	upstream	no
0	XLOC_172118	TCONS_00172671	FAM102A	rna19069	sense	intergenic	7490	same_strand	upstream	no
1	XLOC_120133	TCONS_00120511	NDUFA10	rna13783	antisense	intergenic	42226	convergent	downstream	no
1	XLOC_257066	TCONS_00257888	TSPAN7	rna29310	sense	intergenic	45410	same_strand	downstream	no
0	XLOC_257066	TCONS_00257888	TSPAN7	rna29309	sense	intergenic	45410	same_strand	downstream	no
1	XLOC_033577	TCONS_00033681	MON2	rna3860	sense	genic	0	nested	intronic	no
0	XLOC_033577	TCONS_00033681	MON2	rna3861	sense	genic	0	nested	intronic	no
0	XLOC_033577	TCONS_00033681	MON2	rna3862	sense	genic	0	nested	intronic	no
1	XLOC_051317	TCONS_00051475	ARHGEF10	rna6003	antisense	genic	0	nested	intronic	no
0	XLOC_051317	TCONS_00051475	ARHGEF10	rna5998	antisense	genic	0	nested	intronic	no
0	XLOC_051317	TCONS_00051475	ARHGEF10	rna5999	antisense	genic	0	nested	intronic	no
0	XLOC_051317	TCONS_00051475	ARHGEF10	rna5997	antisense	genic	0	nested	intronic	no
0	XLOC_051317	TCONS_00051475	ARHGEF10	rna6000	antisense	genic	0	nested	intronic	no
0	XLOC_051317	TCONS_00051475	ARHGEF10	rna6001	antisense	genic	0	nested	intronic	no
0	XLOC_051317	TCONS_00051475	ARHGEF10	rna6002	antisense	genic	0	nested	intronic	no
1	XLOC_308785	TCONS_00309773	PUM1	rna34972	sense	genic	0	nested	intronic	no
0	XLOC_308785	TCONS_00309773	PUM1	rna34974	sense	genic	0	nested	intronic	no
0	XLOC_308785	TCONS_00309773	PUM1	rna34975	sense	genic	0	nested	intronic	no
0	XLOC_308785	TCONS_00309773	PUM1	rna34971	sense	genic	0	nested	intronic	no
0	XLOC_308785	TCONS_00309773	PUM1	rna34973	sense	genic	0	nested	intronic	no
1	XLOC_117840	TCONS_00118212	GABRP	rna13566	sense	intergenic	530	same_strand	downstream	no
0	XLOC_117840	TCONS_00118212	LOC106034326	rna13565	sense	intergenic	8042	same_strand	upstream	no
0	XLOC_117840	TCONS_00118212	GABRP	rna13567	sense	intergenic	1600	same_strand	downstream	no
1	XLOC_349889	TCONS_00351017	ZAP70	rna40662	antisense	intergenic	81	convergent	downstream	no
0	XLOC_349889	TCONS_00351017	ZAP70	rna40663	antisense	intergenic	807	convergent	downstream	no
0	XLOC_349889	TCONS_00351017	ZAP70	rna40664	antisense	intergenic	807	convergent	downstream	no
1	XLOC_082837	TCONS_00083086	MECOM	rna8865	sense	genic	0	nested	intronic	yes
0	XLOC_082837	TCONS_00083086	MECOM	rna8869	sense	intergenic	3047	same_strand	upstream	yes
0	XLOC_082837	TCONS_00083086	MECOM	rna8867	sense	intergenic	3047	same_strand	upstream	yes
0	XLOC_082837	TCONS_00083086	MECOM	rna8866	sense	intergenic	3047	same_strand	upstream	yes
0	XLOC_082837	TCONS_00083086	MECOM	rna8868	sense	intergenic	3047	same_strand	upstream	yes
1	XLOC_009960	TCONS_00009986	STIM2	rna1636	sense	intergenic	252	same_strand	downstream	no
0	XLOC_009960	TCONS_00009986	STIM2	rna1637	sense	intergenic	7802	same_strand	downstream	no
0	XLOC_009960	TCONS_00009986	STIM2	rna1638	sense	intergenic	254	same_strand	downstream	no
1	XLOC_044281	TCONS_00044422	LOC106030169	rna5313	sense	intergenic	13156	same_strand	upstream	no
0	XLOC_044281	TCONS_00044422	LOC106030169	rna5314	sense	intergenic	13156	same_strand	upstream	no
1	XLOC_166758	TCONS_00167300	ACVR2B	rna18767	sense	intergenic	35237	same_strand	upstream	no
1	XLOC_075555	TCONS_00075780	STXBP6	rna8381	antisense	intergenic	5650	convergent	downstream	no
0	XLOC_075555	TCONS_00075780	STXBP6	rna8382	antisense	intergenic	5650	convergent	downstream	no
1	XLOC_281900	TCONS_00282799	ARHGAP40	rna31828	sense	intergenic	14941	same_strand	downstream	yes
0	XLOC_281900	TCONS_00282799	ARHGAP40	rna31835	sense	intergenic	14942	same_strand	downstream	yes
0	XLOC_281900	TCONS_00282799	SLC32A1	rna31827	sense	intergenic	16672	same_strand	upstream	no
0	XLOC_281900	TCONS_00282799	ARHGAP40	rna31830	sense	intergenic	14941	same_strand	downstream	yes
0	XLOC_281900	TCONS_00282799	ARHGAP40	rna31832	sense	intergenic	14941	same_strand	downstream	yes
0	XLOC_281900	TCONS_00282799	ARHGAP40	rna31836	sense	intergenic	14942	same_strand	downstream	yes
0	XLOC_281900	TCONS_00282799	ARHGAP40	rna31829	sense	intergenic	14941	same_strand	downstream	yes
0	XLOC_281900	TCONS_00282799	ARHGAP40	rna31834	sense	intergenic	14942	same_strand	downstream	yes
0	XLOC_281900	TCONS_00282799	ARHGAP40	rna31833	sense	intergenic	14941	same_strand	downstream	yes
0	XLOC_281900	TCONS_00282799	ARHGAP40	rna31831	sense	intergenic	14941	same_strand	downstream	yes
1	XLOC_270458	TCONS_00271327	LOC106042861	rna30578	sense	intergenic	1169	same_strand	upstream	yes
0	XLOC_270458	TCONS_00271327	LOC106042861	rna30580	sense	intergenic	1175	same_strand	upstream	yes
0	XLOC_270458	TCONS_00271327	LOC106042861	rna30579	sense	intergenic	1169	same_strand	upstream	yes
1	XLOC_295302	TCONS_00296239	RERE	rna33444	sense	genic	0	nested	intronic	no
1	XLOC_029206	TCONS_00029299	POLDIP3	rna3584	sense	genic	0	nested	intronic	no
0	XLOC_029206	TCONS_00029299	RRP7A	rna3585	sense	intergenic	7107	same_strand	upstream	no
0	XLOC_029206	TCONS_00029299	LOC106046163	rna3583	antisense	intergenic	9899	divergent	upstream	no
1	XLOC_336877	TCONS_00337956	LOC106047373	rna38959	antisense	intergenic	2577	divergent	upstream	no
0	XLOC_336877	TCONS_00337956	LOC106047378	rna38966	sense	intergenic	6587	same_strand	upstream	no
0	XLOC_336877	TCONS_00337956	LOC106047378	rna38964	sense	intergenic	6587	same_strand	upstream	no
0	XLOC_336877	TCONS_00337956	LOC106047378	rna38965	sense	intergenic	6587	same_strand	upstream	no
0	XLOC_336877	TCONS_00337956	LOC106047378	rna38969	sense	intergenic	6587	same_strand	upstream	no
0	XLOC_336877	TCONS_00337956	LOC106047378	rna38970	sense	intergenic	6587	same_strand	upstream	no
0	XLOC_336877	TCONS_00337956	LOC106047378	rna38961	sense	intergenic	6587	same_strand	upstream	no
0	XLOC_336877	TCONS_00337956	LOC106047378	rna38968	sense	intergenic	6587	same_strand	upstream	no
0	XLOC_336877	TCONS_00337956	LOC106047378	rna38971	sense	intergenic	6587	same_strand	upstream	no
0	XLOC_336877	TCONS_00337956	LOC106047378	rna38962	sense	intergenic	6587	same_strand	upstream	no
0	XLOC_336877	TCONS_00337956	LOC106047378	rna38963	sense	intergenic	6587	same_strand	upstream	no
0	XLOC_336877	TCONS_00337956	LOC106047378	rna38960	sense	intergenic	6071	same_strand	upstream	no
0	XLOC_336877	TCONS_00337956	LOC106047378	rna38967	sense	intergenic	6587	same_strand	upstream	no
1	XLOC_353826	TCONS_00354980	TMEM40	rna41489	antisense	intergenic	245	divergent	upstream	no
0	XLOC_353826	TCONS_00354980	TMEM40	rna41488	antisense	intergenic	245	divergent	upstream	no
1	XLOC_002973	TCONS_00002981	LOC106032671	rna991	antisense	genic	0	nested	intronic	no
0	XLOC_002973	TCONS_00002981	LOC106032671	rna990	antisense	genic	0	nested	intronic	no
0	XLOC_002973	TCONS_00002981	LOC106032671	rna989	antisense	genic	0	nested	intronic	no
0	XLOC_002973	TCONS_00002981	LOC106032671	rna992	antisense	genic	0	nested	intronic	no
1	XLOC_024953	TCONS_00025028	ALKBH3	rna3300	antisense	intergenic	6903	convergent	downstream	no
1	XLOC_347579	TCONS_00348704	BNC2	rna40378	antisense	genic	0	nested	intronic	no
1	XLOC_164964	TCONS_00165495	SLC4A11	rna18604	sense	genic	0	nested	intronic	no
0	XLOC_164964	TCONS_00165495	SLC4A11	rna18605	sense	intergenic	8810	same_strand	upstream	no
1	XLOC_017137	TCONS_00017191	LOC106038858	rna2209	antisense	genic	0	nested	intronic	no
1	XLOC_197083	TCONS_00197711	LOC106038582	rna22110	antisense	genic	0	nested	intronic	no
0	XLOC_197083	TCONS_00197711	LOC106038582	rna22111	antisense	intergenic	713	divergent	upstream	no
0	XLOC_197083	TCONS_00197711	LOC106038582	rna22105	antisense	genic	0	nested	intronic	no
0	XLOC_197083	TCONS_00197711	LOC106038582	rna22112	antisense	intergenic	1292	divergent	upstream	no
0	XLOC_197083	TCONS_00197711	LOC106038582	rna22106	antisense	genic	0	nested	intronic	no
0	XLOC_197083	TCONS_00197711	VSIG1	rna22109	sense	intergenic	4212	same_strand	upstream	no
0	XLOC_197083	TCONS_00197711	LOC106038582	rna22108	antisense	genic	0	nested	intronic	no
0	XLOC_197083	TCONS_00197711	LOC106038582	rna22104	antisense	genic	0	nested	intronic	no
0	XLOC_197083	TCONS_00197711	LOC106038582	rna22107	antisense	genic	0	nested	intronic	no
0	XLOC_197083	TCONS_00197711	LOC106038582	rna22113	antisense	intergenic	9417	divergent	upstream	no
1	XLOC_009922	TCONS_00009948	RBPJ	rna1630	sense	genic	0	nested	intronic	yes
0	XLOC_009922	TCONS_00009948	RBPJ	rna1631	sense	genic	0	nested	intronic	yes
0	XLOC_009922	TCONS_00009948	RBPJ	rna1632	sense	intergenic	7031	same_strand	upstream	yes
1	XLOC_107003	TCONS_00107357	SOX6	rna12725	sense	genic	0	nested	intronic	yes
1	XLOC_141951	TCONS_00142401	GSAP	rna16123	sense	genic	0	nested	intronic	no
0	XLOC_141951	TCONS_00142401	GSAP	rna16124	sense	genic	0	nested	intronic	no
0	XLOC_141951	TCONS_00142401	GSAP	rna16122	sense	genic	0	nested	intronic	no
1	XLOC_217203	TCONS_00217897	SGCE	rna24492	sense	genic	0	nested	intronic	yes
0	XLOC_217203	TCONS_00217897	SGCE	rna24489	sense	genic	0	nested	intronic	yes
0	XLOC_217203	TCONS_00217897	SGCE	rna24493	sense	intergenic	592	same_strand	upstream	yes
0	XLOC_217203	TCONS_00217897	SGCE	rna24491	sense	genic	0	nested	intronic	yes
0	XLOC_217203	TCONS_00217897	SGCE	rna24490	sense	genic	0	nested	intronic	yes
1	XLOC_007579	TCONS_00007602	POLR1A	rna1175	sense	intergenic	5483	same_strand	downstream	no
1	XLOC_010854	TCONS_00010883	ITPK1	rna1760	sense	intergenic	4700	same_strand	upstream	no
1	XLOC_074702	TCONS_00074926	LOC106031600	rna8160	antisense	intergenic	5892	convergent	downstream	no
0	XLOC_074702	TCONS_00074926	LCLAT1	rna8163	sense	intergenic	6136	same_strand	downstream	no
0	XLOC_074702	TCONS_00074926	LCLAT1	rna8165	sense	intergenic	6136	same_strand	downstream	no
0	XLOC_074702	TCONS_00074926	LCLAT1	rna8164	sense	intergenic	6136	same_strand	downstream	no
0	XLOC_074702	TCONS_00074926	LCLAT1	rna8162	sense	intergenic	6136	same_strand	downstream	no
1	XLOC_082336	TCONS_00082582	WIPI2	rna9137	sense	intergenic	2974	same_strand	downstream	no
0	XLOC_082336	TCONS_00082582	SLC29A4	rna9138	sense	intergenic	5347	same_strand	upstream	no
1	XLOC_090330	TCONS_00090614	MAP3K5	rna9905	sense	genic	0	nested	intronic	no
1	XLOC_279790	TCONS_00280683	RBMS3	rna31576	sense	genic	0	nested	intronic	no
0	XLOC_279790	TCONS_00280683	RBMS3	rna31573	sense	intergenic	6780	same_strand	upstream	no
0	XLOC_279790	TCONS_00280683	RBMS3	rna31580	sense	genic	0	nested	intronic	no
0	XLOC_279790	TCONS_00280683	RBMS3	rna31572	sense	genic	0	nested	intronic	no
0	XLOC_279790	TCONS_00280683	RBMS3	rna31579	sense	genic	0	nested	intronic	no
0	XLOC_279790	TCONS_00280683	RBMS3	rna31578	sense	intergenic	6780	same_strand	upstream	no
0	XLOC_279790	TCONS_00280683	RBMS3	rna31574	sense	genic	0	nested	intronic	no
0	XLOC_279790	TCONS_00280683	RBMS3	rna31577	sense	intergenic	6780	same_strand	upstream	no
0	XLOC_279790	TCONS_00280683	RBMS3	rna31571	sense	genic	0	nested	intronic	no
0	XLOC_279790	TCONS_00280683	RBMS3	rna31575	sense	genic	0	nested	intronic	no
1	XLOC_357009	TCONS_00358180	NSD1	rna42343	sense	genic	0	nested	intronic	no
1	XLOC_302232	TCONS_00303198	LOC106044710	rna34177	sense	intergenic	30658	same_strand	upstream	no
0	XLOC_302232	TCONS_00303198	LOC106044710	rna34178	sense	intergenic	30658	same_strand	upstream	no
1	XLOC_318689	TCONS_00319709	LOC106045870	rna36259	antisense	genic	0	nested	intronic	no
0	XLOC_318689	TCONS_00319709	LOC106045866	rna36264	sense	intergenic	5964	same_strand	upstream	no
0	XLOC_318689	TCONS_00319709	LOC106045870	rna36260	antisense	genic	0	nested	intronic	no
0	XLOC_318689	TCONS_00319709	LOC106045870	rna36262	antisense	genic	0	nested	intronic	no
0	XLOC_318689	TCONS_00319709	LOC106045870	rna36263	antisense	genic	0	nested	intronic	no
0	XLOC_318689	TCONS_00319709	LOC106045870	rna36261	antisense	genic	0	nested	intronic	no
1	XLOC_074281	TCONS_00074501	ESRRG	rna8099	antisense	genic	0	nested	intronic	no
0	XLOC_074281	TCONS_00074501	ESRRG	rna8098	antisense	genic	0	nested	intronic	no
1	XLOC_292654	TCONS_00293582	DLGAP5	rna32956	antisense	intergenic	7427	divergent	upstream	yes
0	XLOC_292654	TCONS_00293582	DLGAP5	rna32957	antisense	intergenic	7428	divergent	upstream	yes
0	XLOC_292654	TCONS_00293582	DLGAP5	rna32955	antisense	intergenic	7427	divergent	upstream	yes
1	XLOC_175704	TCONS_00176272	ME2	rna19692	sense	intergenic	881	same_strand	downstream	no
0	XLOC_175704	TCONS_00176272	ELAC1	rna19697	sense	intergenic	1492	same_strand	upstream	no
0	XLOC_175704	TCONS_00176272	ELAC1	rna19693	sense	intergenic	1492	same_strand	upstream	no
0	XLOC_175704	TCONS_00176272	ELAC1	rna19699	sense	intergenic	1492	same_strand	upstream	no
0	XLOC_175704	TCONS_00176272	ELAC1	rna19694	sense	intergenic	1492	same_strand	upstream	no
0	XLOC_175704	TCONS_00176272	ELAC1	rna19695	sense	intergenic	1492	same_strand	upstream	no
0	XLOC_175704	TCONS_00176272	ELAC1	rna19698	sense	intergenic	1492	same_strand	upstream	no
0	XLOC_175704	TCONS_00176272	ELAC1	rna19696	sense	intergenic	1492	same_strand	upstream	no
1	XLOC_029248	TCONS_00029341	TCF20	rna3596	sense	genic	0	nested	intronic	no
0	XLOC_029248	TCONS_00029341	TCF20	rna3599	sense	genic	0	nested	intronic	no
0	XLOC_029248	TCONS_00029341	TCF20	rna3600	sense	genic	0	nested	intronic	no
0	XLOC_029248	TCONS_00029341	TCF20	rna3597	sense	genic	0	nested	intronic	no
0	XLOC_029248	TCONS_00029341	TCF20	rna3598	sense	genic	0	nested	intronic	no
0	XLOC_029248	TCONS_00029341	TCF20	rna3601	sense	genic	0	nested	intronic	no
0	XLOC_029248	TCONS_00029341	TCF20	rna3602	sense	genic	0	nested	intronic	no
0	XLOC_029248	TCONS_00029341	TCF20	rna3594	sense	genic	0	nested	intronic	no
1	XLOC_048358	TCONS_00048508	LOC106030278	rna5592	antisense	intergenic	2559	divergent	upstream	no
0	XLOC_048358	TCONS_00048508	LOC106030277	rna5588	sense	intergenic	9490	same_strand	upstream	no
1	XLOC_140074	TCONS_00140514	MAGI1	rna15970	sense	intergenic	314	same_strand	downstream	no
0	XLOC_140074	TCONS_00140514	LOC106035422	rna15958	sense	intergenic	6282	same_strand	upstream	no
0	XLOC_140074	TCONS_00140514	MAGI1	rna15971	sense	intergenic	314	same_strand	downstream	no
0	XLOC_140074	TCONS_00140514	MAGI1	rna15963	sense	intergenic	314	same_strand	downstream	no
0	XLOC_140074	TCONS_00140514	MAGI1	rna15969	sense	intergenic	314	same_strand	downstream	no
0	XLOC_140074	TCONS_00140514	MAGI1	rna15964	sense	intergenic	314	same_strand	downstream	no
0	XLOC_140074	TCONS_00140514	MAGI1	rna15972	sense	intergenic	894	same_strand	downstream	no
0	XLOC_140074	TCONS_00140514	MAGI1	rna15967	sense	intergenic	314	same_strand	downstream	no
0	XLOC_140074	TCONS_00140514	LOC106035423	rna15961	antisense	intergenic	8589	convergent	downstream	no
0	XLOC_140074	TCONS_00140514	MAGI1	rna15966	sense	intergenic	314	same_strand	downstream	no
0	XLOC_140074	TCONS_00140514	LOC106035423	rna15960	antisense	intergenic	8589	convergent	downstream	no
0	XLOC_140074	TCONS_00140514	LOC106035422	rna15959	sense	intergenic	6282	same_strand	upstream	no
0	XLOC_140074	TCONS_00140514	MAGI1	rna15968	sense	intergenic	314	same_strand	downstream	no
0	XLOC_140074	TCONS_00140514	MAGI1	rna15973	sense	intergenic	894	same_strand	downstream	no
0	XLOC_140074	TCONS_00140514	MAGI1	rna15962	sense	intergenic	314	same_strand	downstream	no
0	XLOC_140074	TCONS_00140514	MAGI1	rna15965	sense	intergenic	314	same_strand	downstream	no
1	XLOC_052987	TCONS_00053149	LOC106030469	rna5899	sense	intergenic	1901	same_strand	upstream	no
0	XLOC_052987	TCONS_00053149	LOC106030469	rna5900	sense	intergenic	5272	same_strand	upstream	no
1	XLOC_009262	TCONS_00009288	BST1	rna1486	sense	intergenic	51	same_strand	downstream	no
0	XLOC_009262	TCONS_00009288	CD38	rna1488	sense	intergenic	4826	same_strand	upstream	no
0	XLOC_009262	TCONS_00009288	BST1	rna1487	sense	intergenic	5947	same_strand	downstream	no
1	XLOC_287503	TCONS_00288417	MNT	rna32445	sense	intergenic	6987	same_strand	upstream	no
1	XLOC_304536	TCONS_00305516	TLDC1	rna34445	sense	intergenic	7095	same_strand	upstream	yes
0	XLOC_304536	TCONS_00305516	LOC106044847	rna34446	antisense	intergenic	7181	divergent	upstream	no
1	XLOC_082396	TCONS_00082643	NT5M	rna9195	sense	intergenic	60	same_strand	downstream	no
0	XLOC_082396	TCONS_00082643	COPS3	rna9194	antisense	intergenic	8709	divergent	upstream	no
1	XLOC_159971	TCONS_00160491	MARCH6	rna18089	sense	intergenic	1076	same_strand	downstream	no
0	XLOC_159971	TCONS_00160491	ROPN1L	rna18093	sense	intergenic	3608	same_strand	upstream	no
0	XLOC_159971	TCONS_00160491	ROPN1L	rna18091	sense	intergenic	2719	same_strand	upstream	no
0	XLOC_159971	TCONS_00160491	ROPN1L	rna18090	sense	intergenic	2582	same_strand	upstream	no
0	XLOC_159971	TCONS_00160491	ROPN1L	rna18092	sense	intergenic	3454	same_strand	upstream	no
1	XLOC_190251	TCONS_00190860	WNT7B	rna21521	sense	intergenic	12267	same_strand	upstream	no
0	XLOC_190251	TCONS_00190860	WNT7B	rna21522	sense	intergenic	18289	same_strand	upstream	no
1	XLOC_253070	TCONS_00253880	CRB1	rna29066	antisense	genic	0	nested	intronic	no
0	XLOC_253070	TCONS_00253880	CRB1	rna29065	antisense	genic	0	nested	intronic	no
0	XLOC_253070	TCONS_00253880	CRB1	rna29064	antisense	genic	0	nested	intronic	no
1	XLOC_120074	TCONS_00120451	WDR75	rna14081	sense	intergenic	190	same_strand	downstream	no
1	XLOC_237693	TCONS_00238452	LOC106041021	rna27168	sense	intergenic	5478	same_strand	upstream	no
0	XLOC_237693	TCONS_00238452	LOC106041021	rna27169	sense	intergenic	5478	same_strand	upstream	no
1	XLOC_028909	TCONS_00028999	LOC106040969	rna3441	sense	intergenic	13918	same_strand	upstream	no
1	XLOC_037464	TCONS_00037582	RHOU	rna4039	sense	intergenic	26522	same_strand	downstream	no
1	XLOC_333356	TCONS_00334423	MYO1D	rna38172	sense	genic	0	nested	intronic	no
1	XLOC_256465	TCONS_00257285	MED14	rna29288	sense	intergenic	28227	same_strand	upstream	no
1	XLOC_319433	TCONS_00320456	RPL37A	rna36363	sense	intergenic	6191	same_strand	downstream	no
1	XLOC_303732	TCONS_00304707	BCL6	rna34381	antisense	intergenic	57765	divergent	upstream	no
1	XLOC_140020	TCONS_00140460	ADAMTS9	rna15948	sense	intergenic	2527	same_strand	upstream	yes
1	XLOC_298917	TCONS_00299872	LOC106044520	rna33841	sense	intergenic	2765	same_strand	downstream	no
0	XLOC_298917	TCONS_00299872	TSPAN12	rna33840	antisense	intergenic	5013	divergent	upstream	no
0	XLOC_298917	TCONS_00299872	TSPAN12	rna33839	antisense	intergenic	4990	divergent	upstream	no
1	XLOC_344442	TCONS_00345553	IFFO1	rna39838	sense	intergenic	897	same_strand	downstream	no
0	XLOC_344442	TCONS_00345553	LOC106047847	rna39843	sense	intergenic	9671	same_strand	upstream	no
0	XLOC_344442	TCONS_00345553	LOC106047847	rna39842	sense	intergenic	9671	same_strand	upstream	no
0	XLOC_344442	TCONS_00345553	LOC106047847	rna39841	sense	intergenic	9671	same_strand	upstream	no
0	XLOC_344442	TCONS_00345553	LOC106047847	rna39840	sense	intergenic	9671	same_strand	upstream	no
0	XLOC_344442	TCONS_00345553	GAPDH	rna39839	antisense	intergenic	2983	convergent	downstream	no
1	XLOC_111628	TCONS_00111992	LOC106034154	rna13130	antisense	intergenic	26178	divergent	upstream	no
0	XLOC_111628	TCONS_00111992	LOC106034154	rna13129	antisense	intergenic	26178	divergent	upstream	no
1	XLOC_004477	TCONS_00004486	LOC106029971	rna421	sense	genic	0	nested	intronic	no
0	XLOC_004477	TCONS_00004486	LOC106029971	rna420	sense	genic	0	nested	intronic	no
1	XLOC_300325	TCONS_00301284	DACT2	rna33924	antisense	intergenic	20550	convergent	downstream	no
0	XLOC_300325	TCONS_00301284	LOC106044555	rna33923	sense	intergenic	25493	same_strand	downstream	no
1	XLOC_043320	TCONS_00043459	LOC106030017	rna5055	antisense	intergenic	1226	divergent	upstream	no
1	XLOC_073013	TCONS_00073230	XDH	rna8154	sense	intergenic	5512	same_strand	downstream	yes
0	XLOC_073013	TCONS_00073230	EHD3	rna8155	antisense	intergenic	6720	convergent	downstream	no
1	XLOC_166561	TCONS_00167097	GARS	rna18708	sense	intergenic	8066	same_strand	upstream	no
1	XLOC_212622	TCONS_00213304	LOC106039385	rna23887	sense	intergenic	21088	same_strand	upstream	no
1	XLOC_026488	TCONS_00026569	BCAS4	rna2721	antisense	genic	0	nested	intronic	no
0	XLOC_026488	TCONS_00026569	LOC106041588	rna2720	antisense	intergenic	4199	convergent	downstream	no
1	XLOC_095017	TCONS_00095314	SGCD	rna10572	sense	genic	0	nested	intronic	no
0	XLOC_095017	TCONS_00095314	SGCD	rna10570	sense	genic	0	nested	intronic	no
0	XLOC_095017	TCONS_00095314	SGCD	rna10571	sense	genic	0	nested	intronic	no
0	XLOC_095017	TCONS_00095314	SGCD	rna10569	sense	genic	0	nested	intronic	no
0	XLOC_095017	TCONS_00095314	SGCD	rna10568	sense	genic	0	nested	intronic	no
1	XLOC_182139	TCONS_00182731	ZNF521	rna20142	sense	genic	0	nested	intronic	no
0	XLOC_182139	TCONS_00182731	ZNF521	rna20143	sense	genic	0	nested	intronic	no
0	XLOC_182139	TCONS_00182731	ZNF521	rna20144	sense	genic	0	nested	intronic	no
1	XLOC_287461	TCONS_00288371	LOC106043777	rna32431	sense	intergenic	34239	same_strand	downstream	no
0	XLOC_287461	TCONS_00288371	LOC106043780	rna32432	antisense	intergenic	37164	divergent	upstream	no
1	XLOC_226006	TCONS_00226716	LOC106040336	rna25741	sense	intergenic	72953	same_strand	downstream	no
1	XLOC_302352	TCONS_00303319	LOC106044707	rna34182	sense	intergenic	12764	same_strand	upstream	no
1	XLOC_340930	TCONS_00342029	MEF2C	rna39334	sense	genic	0	nested	intronic	no
0	XLOC_340930	TCONS_00342029	MEF2C	rna39335	sense	genic	0	nested	intronic	no
0	XLOC_340930	TCONS_00342029	MEF2C	rna39332	sense	genic	0	nested	intronic	no
0	XLOC_340930	TCONS_00342029	MEF2C	rna39337	sense	genic	0	nested	intronic	no
0	XLOC_340930	TCONS_00342029	MEF2C	rna39333	sense	genic	0	nested	intronic	no
0	XLOC_340930	TCONS_00342029	MEF2C	rna39331	sense	genic	0	nested	intronic	no
0	XLOC_340930	TCONS_00342029	MEF2C	rna39336	sense	genic	0	nested	intronic	no
1	XLOC_103852	TCONS_00104195	LOC106033633	rna12084	antisense	intergenic	90164	divergent	upstream	no
1	XLOC_058522	TCONS_00058697	EYA1	rna6264	antisense	genic	0	nested	intronic	no
0	XLOC_058522	TCONS_00058697	EYA1	rna6262	antisense	genic	0	nested	intronic	no
0	XLOC_058522	TCONS_00058697	EYA1	rna6263	antisense	genic	0	nested	intronic	no
1	XLOC_185365	TCONS_00185963	ASB9	rna20519	sense	intergenic	1576	same_strand	upstream	yes
1	XLOC_344941	TCONS_00346054	GATAD2A	rna40001	antisense	genic	0	nested	intronic	no
0	XLOC_344941	TCONS_00346054	GATAD2A	rna39998	antisense	genic	0	nested	intronic	no
0	XLOC_344941	TCONS_00346054	GATAD2A	rna40002	antisense	genic	0	nested	intronic	no
0	XLOC_344941	TCONS_00346054	GATAD2A	rna39999	antisense	genic	0	nested	intronic	no
0	XLOC_344941	TCONS_00346054	GATAD2A	rna39997	antisense	genic	0	nested	intronic	no
0	XLOC_344941	TCONS_00346054	GATAD2A	rna40000	antisense	genic	0	nested	intronic	no
1	XLOC_175706	TCONS_00176276	LOC106037332	rna19705	sense	genic	0	nested	intronic	no
0	XLOC_175706	TCONS_00176276	MEX3C	rna19702	antisense	intergenic	5254	divergent	upstream	no
0	XLOC_175706	TCONS_00176276	MEX3C	rna19703	antisense	intergenic	8651	divergent	upstream	no
0	XLOC_175706	TCONS_00176276	MEX3C	rna19704	antisense	intergenic	8633	divergent	upstream	no
1	XLOC_303724	TCONS_00304693	BCL6	rna34381	antisense	intergenic	7639	divergent	upstream	no
1	XLOC_189557	TCONS_00190163	LOC106038237	rna21524	antisense	intergenic	10942	convergent	downstream	no
0	XLOC_189557	TCONS_00190163	LOC106038237	rna21526	antisense	intergenic	10942	convergent	downstream	no
0	XLOC_189557	TCONS_00190163	LOC106038237	rna21525	antisense	intergenic	10942	convergent	downstream	no
1	XLOC_354450	TCONS_00355604	LOC106049027	rna41630	sense	intergenic	11080	same_strand	upstream	no
1	XLOC_164979	TCONS_00165510	SLC4A11	rna18604	sense	intergenic	25309	same_strand	upstream	no
1	XLOC_287802	TCONS_00288719	KSR1	rna32466	sense	genic	0	nested	intronic	no
0	XLOC_287802	TCONS_00288719	KSR1	rna32469	sense	intergenic	3	same_strand	upstream	no
0	XLOC_287802	TCONS_00288719	KSR1	rna32470	sense	intergenic	3	same_strand	upstream	no
0	XLOC_287802	TCONS_00288719	KSR1	rna32467	sense	intergenic	3	same_strand	upstream	no
0	XLOC_287802	TCONS_00288719	KSR1	rna32468	sense	intergenic	3488	same_strand	upstream	no
1	XLOC_072589	TCONS_00072805	ESRRG	rna8098	sense	intergenic	41193	same_strand	upstream	no
1	XLOC_273274	TCONS_00274150	LOC106042989	rna30906	sense	genic	0	nested	intronic	no
1	XLOC_301324	TCONS_00302288	PRDM16	rna34106	antisense	genic	0	nested	intronic	no
1	XLOC_094988	TCONS_00095285	GALNT10	rna10550	sense	genic	0	nested	intronic	no
1	XLOC_161495	TCONS_00162019	LOC106036598	rna18171	antisense	intergenic	404	divergent	upstream	no
0	XLOC_161495	TCONS_00162019	BTBD3	rna18176	antisense	intergenic	6500	convergent	downstream	yes
0	XLOC_161495	TCONS_00162019	BTBD3	rna18178	antisense	intergenic	6500	convergent	downstream	yes
0	XLOC_161495	TCONS_00162019	BTBD3	rna18175	antisense	intergenic	6500	convergent	downstream	yes
0	XLOC_161495	TCONS_00162019	LOC106036598	rna18173	antisense	intergenic	404	divergent	upstream	no
0	XLOC_161495	TCONS_00162019	LOC106036598	rna18172	antisense	intergenic	404	divergent	upstream	no
0	XLOC_161495	TCONS_00162019	BTBD3	rna18177	antisense	intergenic	6500	convergent	downstream	yes
0	XLOC_161495	TCONS_00162019	LOC106036598	rna18174	antisense	intergenic	404	divergent	upstream	no
1	XLOC_157260	TCONS_00157772	ACAN	rna17768	antisense	genic	0	nested	intronic	no
1	XLOC_283367	TCONS_00284272	ZWILCH	rna32185	antisense	genic	0	nested	intronic	no
0	XLOC_283367	TCONS_00284272	ZWILCH	rna32186	antisense	genic	0	nested	intronic	no
1	XLOC_194885	TCONS_00195507	EXT1	rna21993	sense	intergenic	8148	same_strand	upstream	no
1	XLOC_307051	TCONS_00308036	GRIP2	rna34775	sense	intergenic	13218	same_strand	upstream	no
0	XLOC_307051	TCONS_00308036	GRIP2	rna34776	sense	intergenic	13302	same_strand	upstream	no
1	XLOC_135203	TCONS_00135624	NCALD	rna15590	sense	intergenic	1285	same_strand	downstream	yes
0	XLOC_135203	TCONS_00135624	GRHL2	rna15589	antisense	intergenic	4545	convergent	downstream	no
1	XLOC_331636	TCONS_00332689	IL15	rna37735	antisense	genic	0	nested	intronic	no
0	XLOC_331636	TCONS_00332689	LOC106046680	rna37744	sense	intergenic	4635	same_strand	upstream	no
0	XLOC_331636	TCONS_00332689	IL15	rna37736	antisense	genic	0	nested	intronic	no
0	XLOC_331636	TCONS_00332689	IL15	rna37738	antisense	genic	0	nested	intronic	no
0	XLOC_331636	TCONS_00332689	LOC106046680	rna37740	sense	intergenic	4635	same_strand	upstream	no
0	XLOC_331636	TCONS_00332689	LOC106046680	rna37742	sense	intergenic	4635	same_strand	upstream	no
0	XLOC_331636	TCONS_00332689	LOC106046680	rna37741	sense	intergenic	4635	same_strand	upstream	no
0	XLOC_331636	TCONS_00332689	IL15	rna37734	antisense	genic	0	nested	intronic	no
0	XLOC_331636	TCONS_00332689	LOC106046680	rna37739	sense	intergenic	4635	same_strand	upstream	no
0	XLOC_331636	TCONS_00332689	LOC106046680	rna37743	sense	intergenic	4635	same_strand	upstream	no
0	XLOC_331636	TCONS_00332689	IL15	rna37737	antisense	genic	0	nested	intronic	no
1	XLOC_282309	TCONS_00283208	LOC106043539	rna31963	sense	intergenic	1200	same_strand	upstream	no
0	XLOC_282309	TCONS_00283208	MLF1	rna31962	antisense	intergenic	2442	divergent	upstream	no
0	XLOC_282309	TCONS_00283208	LOC106043539	rna31964	sense	intergenic	1931	same_strand	upstream	no
0	XLOC_282309	TCONS_00283208	MLF1	rna31961	antisense	intergenic	2442	divergent	upstream	no
1	XLOC_305904	TCONS_00306885	DCC	rna34496	antisense	genic	0	nested	intronic	no
0	XLOC_305904	TCONS_00306885	DCC	rna34488	antisense	genic	0	nested	intronic	no
0	XLOC_305904	TCONS_00306885	DCC	rna34494	antisense	genic	0	nested	intronic	no
0	XLOC_305904	TCONS_00306885	DCC	rna34491	antisense	genic	0	nested	intronic	no
0	XLOC_305904	TCONS_00306885	DCC	rna34493	antisense	genic	0	nested	intronic	no
0	XLOC_305904	TCONS_00306885	DCC	rna34486	antisense	genic	0	nested	intronic	no
0	XLOC_305904	TCONS_00306885	DCC	rna34492	antisense	genic	0	nested	intronic	no
0	XLOC_305904	TCONS_00306885	DCC	rna34489	antisense	genic	0	nested	intronic	no
0	XLOC_305904	TCONS_00306885	DCC	rna34490	antisense	genic	0	nested	intronic	no
0	XLOC_305904	TCONS_00306885	DCC	rna34487	antisense	genic	0	nested	intronic	no
0	XLOC_305904	TCONS_00306885	DCC	rna34495	antisense	genic	0	nested	intronic	no
0	XLOC_305904	TCONS_00306885	DCC	rna34497	antisense	genic	0	nested	intronic	no
1	XLOC_163353	TCONS_00163882	LOC106036734	rna18462	antisense	intergenic	580	convergent	downstream	no
0	XLOC_163353	TCONS_00163882	LOC106036780	rna18460	sense	intergenic	8289	same_strand	downstream	no
0	XLOC_163353	TCONS_00163882	THUMPD3	rna18461	antisense	intergenic	1172	divergent	upstream	no
1	XLOC_069445	TCONS_00069647	CABIN1	rna7641	sense	intergenic	4269	same_strand	downstream	no
0	XLOC_069445	TCONS_00069647	LOC106031302	rna7642	antisense	intergenic	8363	divergent	upstream	no
1	XLOC_047736	TCONS_00047884	WIPF3	rna5511	antisense	genic	0	nested	intronic	no
0	XLOC_047736	TCONS_00047884	WIPF3	rna5510	antisense	genic	0	nested	intronic	no
1	XLOC_140138	TCONS_00140580	MAGI1	rna15970	sense	genic	0	nested	intronic	no
0	XLOC_140138	TCONS_00140580	MAGI1	rna15971	sense	genic	0	nested	intronic	no
0	XLOC_140138	TCONS_00140580	MAGI1	rna15963	sense	genic	0	nested	intronic	no
0	XLOC_140138	TCONS_00140580	MAGI1	rna15969	sense	genic	0	nested	intronic	no
0	XLOC_140138	TCONS_00140580	MAGI1	rna15964	sense	genic	0	nested	intronic	no
0	XLOC_140138	TCONS_00140580	MAGI1	rna15972	sense	genic	0	nested	intronic	no
0	XLOC_140138	TCONS_00140580	MAGI1	rna15967	sense	genic	0	nested	intronic	no
0	XLOC_140138	TCONS_00140580	MAGI1	rna15966	sense	genic	0	nested	intronic	no
0	XLOC_140138	TCONS_00140580	MAGI1	rna15968	sense	genic	0	nested	intronic	no
0	XLOC_140138	TCONS_00140580	MAGI1	rna15973	sense	genic	0	nested	intronic	no
0	XLOC_140138	TCONS_00140580	MAGI1	rna15962	sense	genic	0	nested	intronic	no
0	XLOC_140138	TCONS_00140580	MAGI1	rna15965	sense	genic	0	nested	intronic	no
1	XLOC_328079	TCONS_00329120	DCUN1D2	rna37290	sense	genic	0	nested	intronic	no
1	XLOC_334210	TCONS_00335278	APOPT1	rna38254	sense	intergenic	517	same_strand	downstream	no
1	XLOC_092793	TCONS_00093085	LOC106032551	rna9973	antisense	intergenic	84814	convergent	downstream	no
1	XLOC_188051	TCONS_00188653	KIF13B	rna21204	sense	intergenic	9273	same_strand	upstream	no
0	XLOC_188051	TCONS_00188653	KIF13B	rna21205	sense	intergenic	9273	same_strand	upstream	no
0	XLOC_188051	TCONS_00188653	KIF13B	rna21206	sense	intergenic	9273	same_strand	upstream	no
0	XLOC_188051	TCONS_00188653	KIF13B	rna21207	sense	intergenic	9273	same_strand	upstream	no
1	XLOC_281247	TCONS_00282144	EVA1C	rna31764	sense	genic	0	nested	intronic	no
1	XLOC_233764	TCONS_00234502	MYT1	rna26724	sense	intergenic	3310	same_strand	downstream	no
0	XLOC_233764	TCONS_00234502	MYT1	rna26725	sense	intergenic	3310	same_strand	downstream	no
0	XLOC_233764	TCONS_00234502	PCMTD2	rna26728	sense	intergenic	7298	same_strand	upstream	no
0	XLOC_233764	TCONS_00234502	MYT1	rna26722	sense	intergenic	3310	same_strand	downstream	no
0	XLOC_233764	TCONS_00234502	MYT1	rna26723	sense	intergenic	3310	same_strand	downstream	no
0	XLOC_233764	TCONS_00234502	PCMTD2	rna26727	sense	intergenic	7246	same_strand	upstream	no
1	XLOC_177564	TCONS_00178135	HS6ST2	rna19863	sense	genic	0	nested	intronic	no
0	XLOC_177564	TCONS_00178135	HS6ST2	rna19864	sense	intergenic	4598	same_strand	downstream	no
1	XLOC_153086	TCONS_00153579	LOC106036040	rna17238	antisense	intergenic	5264	convergent	downstream	no
1	XLOC_128137	TCONS_00128535	LDLRAD4	rna14936	antisense	genic	0	nested	intronic	yes
0	XLOC_128137	TCONS_00128535	LDLRAD4	rna14937	antisense	genic	0	nested	intronic	yes
1	XLOC_264336	TCONS_00265178	SMG7	rna29907	sense	intergenic	5578	same_strand	upstream	no
0	XLOC_264336	TCONS_00265178	SMG7	rna29908	sense	intergenic	8125	same_strand	upstream	no
1	XLOC_217200	TCONS_00217894	COL1A2	rna24482	antisense	intergenic	3574	convergent	downstream	no
0	XLOC_217200	TCONS_00217894	LOC106039665	rna24484	sense	intergenic	3893	same_strand	downstream	no
0	XLOC_217200	TCONS_00217894	LOC106039665	rna24486	sense	intergenic	3894	same_strand	downstream	no
0	XLOC_217200	TCONS_00217894	LOC106039665	rna24485	sense	intergenic	3894	same_strand	downstream	no
0	XLOC_217200	TCONS_00217894	LOC106039665	rna24483	sense	intergenic	3893	same_strand	downstream	no
0	XLOC_217200	TCONS_00217894	CASD1	rna24487	antisense	intergenic	6971	divergent	upstream	no
1	XLOC_017283	TCONS_00017341	LOC106038986	rna2221	sense	intergenic	5482	same_strand	upstream	no
1	XLOC_269820	TCONS_00270686	BOD1	rna30491	sense	intergenic	6298	same_strand	upstream	no
1	XLOC_232064	TCONS_00232789	SNX19	rna26364	antisense	intergenic	24045	convergent	downstream	no
0	XLOC_232064	TCONS_00232789	LOC106040545	rna26363	antisense	intergenic	29041	divergent	upstream	no
1	XLOC_144460	TCONS_00144932	ANKRD55	rna16260	sense	intergenic	54463	same_strand	upstream	no
0	XLOC_144460	TCONS_00144932	ANKRD55	rna16259	sense	intergenic	54463	same_strand	upstream	no
1	XLOC_324877	TCONS_00325912	LOC106046336	rna37088	sense	intergenic	490	same_strand	upstream	no
0	XLOC_324877	TCONS_00325912	LOC106046335	rna37086	antisense	intergenic	8373	convergent	downstream	yes
0	XLOC_324877	TCONS_00325912	LOC106046335	rna37085	antisense	intergenic	8373	convergent	downstream	yes
0	XLOC_324877	TCONS_00325912	RNPS1	rna37089	antisense	intergenic	3460	divergent	upstream	no
0	XLOC_324877	TCONS_00325912	LOC106046337	rna37087	antisense	intergenic	4335	convergent	downstream	yes
0	XLOC_324877	TCONS_00325912	LOC106046335	rna37084	antisense	intergenic	8373	convergent	downstream	yes
1	XLOC_306538	TCONS_00307521	LOC106045020	rna34740	antisense	genic	0	nested	intronic	no
0	XLOC_306538	TCONS_00307521	LOC106045020	rna34741	antisense	genic	0	nested	intronic	no
0	XLOC_306538	TCONS_00307521	LOC106045020	rna34734	antisense	genic	0	nested	intronic	no
0	XLOC_306538	TCONS_00307521	LOC106045020	rna34742	antisense	genic	0	nested	intronic	no
0	XLOC_306538	TCONS_00307521	LOC106045020	rna34737	antisense	genic	0	nested	intronic	no
0	XLOC_306538	TCONS_00307521	LOC106045020	rna34735	antisense	genic	0	nested	intronic	no
0	XLOC_306538	TCONS_00307521	LOC106045020	rna34736	antisense	genic	0	nested	intronic	no
0	XLOC_306538	TCONS_00307521	LOC106045020	rna34733	antisense	genic	0	nested	intronic	no
0	XLOC_306538	TCONS_00307521	LOC106045025	rna34745	sense	intergenic	3295	same_strand	upstream	no
0	XLOC_306538	TCONS_00307521	LOC106045020	rna34738	antisense	genic	0	nested	intronic	no
0	XLOC_306538	TCONS_00307521	LOC106045020	rna34743	antisense	genic	0	nested	intronic	no
1	XLOC_014291	TCONS_00014336	RBPJ	rna1630	antisense	genic	0	nested	intronic	yes
0	XLOC_014291	TCONS_00014336	RBPJ	rna1631	antisense	intergenic	5922	divergent	upstream	yes
1	XLOC_135476	TCONS_00135900	ABRA	rna15642	sense	intergenic	11763	same_strand	upstream	no
1	XLOC_229972	TCONS_00230695	LOC106040469	rna26090	sense	intergenic	19131	same_strand	upstream	no
1	XLOC_172802	TCONS_00173358	ZNF618	rna19239	antisense	genic	0	nested	intronic	no
1	XLOC_085418	TCONS_00085683	SH3RF1	rna9666	antisense	intergenic	642	divergent	upstream	no
0	XLOC_085418	TCONS_00085683	NEK1	rna9668	antisense	intergenic	2328	convergent	downstream	no
0	XLOC_085418	TCONS_00085683	NEK1	rna9676	antisense	intergenic	2328	convergent	downstream	no
0	XLOC_085418	TCONS_00085683	SH3RF1	rna9665	antisense	intergenic	644	divergent	upstream	no
0	XLOC_085418	TCONS_00085683	NEK1	rna9669	antisense	intergenic	2328	convergent	downstream	no
0	XLOC_085418	TCONS_00085683	NEK1	rna9667	antisense	intergenic	2328	convergent	downstream	no
0	XLOC_085418	TCONS_00085683	SH3RF1	rna9660	antisense	intergenic	644	divergent	upstream	no
0	XLOC_085418	TCONS_00085683	SH3RF1	rna9661	antisense	intergenic	644	divergent	upstream	no
0	XLOC_085418	TCONS_00085683	NEK1	rna9674	antisense	intergenic	2328	convergent	downstream	no
0	XLOC_085418	TCONS_00085683	SH3RF1	rna9659	antisense	intergenic	644	divergent	upstream	no
0	XLOC_085418	TCONS_00085683	SH3RF1	rna9662	antisense	intergenic	644	divergent	upstream	no
0	XLOC_085418	TCONS_00085683	NEK1	rna9671	antisense	intergenic	2328	convergent	downstream	no
0	XLOC_085418	TCONS_00085683	SH3RF1	rna9663	antisense	intergenic	646	divergent	upstream	no
0	XLOC_085418	TCONS_00085683	NEK1	rna9675	antisense	intergenic	2328	convergent	downstream	no
0	XLOC_085418	TCONS_00085683	NEK1	rna9672	antisense	intergenic	2328	convergent	downstream	no
0	XLOC_085418	TCONS_00085683	NEK1	rna9673	antisense	intergenic	2328	convergent	downstream	no
0	XLOC_085418	TCONS_00085683	NEK1	rna9670	antisense	intergenic	2328	convergent	downstream	no
1	XLOC_270611	TCONS_00271480	MAPKAPK3	rna30613	antisense	genic	0	nested	intronic	no
0	XLOC_270611	TCONS_00271480	MAPKAPK3	rna30614	antisense	intergenic	3018	divergent	upstream	no