AAA

BC	K	Seed	Foreground	Background	Ratio	PNG (click for PDF)	Position Weight Matrix
AAA	10	CCCCTCTCCG	214	78	2.722		A 0 0 0 0 0 0 0 0 0 0 C 21 21 21 21 0 21 0 11 21 0 G 0 0 0 0 0 0 0 0 0 21 T 0 0 0 0 21 0 21 10 0 0 i 2.000 2.000 2.000 2.000 2.000 2.000 2.000 1.002 2.000 2.000
AAA	8	CTCCTCTC	1252	592	2.113		A 0 0 0 0 0 0 0 0 C 77 0 77 77 0 77 0 77 G 0 0 0 0 0 0 0 0 T 0 77 0 0 77 0 77 0 i 2.000 2.000 2.000 2.000 2.000 2.000 2.000 2.000
AAA	9	CGTCCTCTC	778	369	2.105		A 10 12 10 14 0 12 0 0 0 C 180 20 12 165 180 15 190 11 190 G 0 144 0 0 0 0 0 10 0 T 0 14 168 11 10 163 0 169 0 i 1.703 0.826 1.368 1.308 1.703 1.269 2.000 1.388 2.000
AAA	9	CTCTTCCTC	697	335	2.077		A 10 14 0 0 0 0 0 0 12 C 244 14 231 16 18 229 226 21 242 G 0 10 0 24 10 12 11 0 0 T 0 216 23 214 226 13 17 233 0 i 1.761 1.157 1.562 1.219 1.396 1.438 1.393 1.588 1.725
AAA	9	CGCCCCCTC	534	280	1.904		A 0 12 11 10 0 18 0 12 11 C 245 19 203 218 232 205 231 0 234 G 0 198 16 0 13 10 0 10 0 T 0 16 15 17 0 12 14 223 0 i 2.000 0.995 1.070 1.395 1.701 1.107 1.684 1.475 1.736
AAA	8	AGGACGAG	27	38	0.718		A 164 52 0 119 0 0 164 0 C 0 0 0 0 164 0 0 0 G 0 112 164 0 0 164 0 164 T 0 0 0 45 0 0 0 0 i 2.000 1.099 2.000 1.152 2.000 2.000 2.000 2.000
AAA	8	GAGAGGAC	164	293	0.561		A 0 70 0 70 0 0 70 0 C 0 0 0 0 0 0 0 70 G 70 0 70 0 70 70 0 0 T 0 0 0 0 0 0 0 0 i 2.000 2.000 2.000 2.000 2.000 2.000 2.000 2.000
AAA	8	AGGAGAGG	43	87	0.500		A 268 0 0 204 0 268 0 69 C 0 57 0 0 0 0 0 0 G 0 211 268 0 268 0 268 199 T 0 0 0 64 0 0 0 0 i 2.000 1.253 2.000 1.207 2.000 2.000 2.000 1.177
AAA	10	GGGAGGAGAA	9	23	0.417		A 0 0 0 12 0 0 12 0 12 12 C 0 0 0 0 0 0 0 0 0 0 G 12 12 12 0 12 12 0 12 0 0 T 0 0 0 0 0 0 0 0 0 0 i 2.000 2.000 2.000 2.000 2.000 2.000 2.000 2.000 2.000 2.000
AAA	9	GGGAGGAGA	40	99	0.410		A 16 20 0 262 17 0 261 17 296 C 10 0 14 0 14 10 0 12 0 G 270 256 268 18 253 267 22 267 0 T 0 20 14 16 12 19 13 0 0 i 1.486 1.294 1.454 1.371 1.174 1.446 1.363 1.442 2.000

AAC

BC	K	Seed	Foreground	Background	Ratio	PNG (click for PDF)	Position Weight Matrix
AAC	9	CTCGCCGTC	2647	769	3.439		A 23 0 0 53 27 0 0 28 0 C 768 54 725 80 678 732 62 64 791 G 0 30 28 586 35 24 729 31 0 T 0 707 38 72 51 35 0 668 0 i 1.810 1.412 1.504 0.769 1.189 1.544 1.604 1.147 2.000
AAC	10	CCTCTCTCCC	3178	956	3.322		A 19 21 62 22 36 20 66 40 68 62 C 1055 868 112 912 65 842 88 880 837 976 G 22 116 104 111 92 102 109 90 89 58 T 0 91 818 51 903 132 833 86 102 0 i 1.732 0.983 0.792 1.126 1.066 0.916 0.832 0.987 0.841 1.392
AAC	7	CCCGTCC	2936	888	3.304		A 0 0 0 0 0 0 0 C 2733 1836 2733 0 0 2733 2021 G 0 0 0 2733 0 0 712 T 0 897 0 0 2733 0 0 i 2.000 1.087 2.000 2.000 2.000 2.000 1.172
AAC	7	CCGTCCC	3544	1094	3.237		A 0 0 0 0 0 0 0 C 3046 2036 0 0 3046 2105 3046 G 0 0 3046 0 0 0 0 T 0 1010 0 3046 0 941 0 i 2.000 1.083 2.000 2.000 2.000 1.108 2.000
AAC	8	AGACGGGG	4900	1543	3.174		A 0 212 190 0 0 0 0 0 C 2611 2177 2481 2349 0 0 2383 2655 G 253 189 193 207 2864 0 218 209 T 0 286 0 308 0 2864 263 0 i 1.569 0.830 1.299 1.146 2.000 2.000 1.180 1.623
AAC	10	CCCTTCTTCC	2397	762	3.143		A 24 28 40 12 41 20 19 20 39 49 C 690 656 618 106 108 609 71 73 617 667 G 44 26 54 110 35 57 74 32 34 42 T 0 48 46 530 574 72 594 633 68 0 i 1.480 1.225 1.019 0.743 0.863 1.005 0.943 1.127 1.025 1.351
AAC	7	CCCCGTC	4487	1440	3.115		A 0 0 0 0 0 0 0 C 3643 2098 3643 2676 0 0 3643 G 0 675 0 0 3643 0 0 T 0 870 0 967 0 3643 0 i 2.000 0.597 2.000 1.165 2.000 2.000 2.000
AAC	9	CGCCTGTCC	2951	959	3.075		A 0 50 0 0 0 0 0 0 0 C 696 95 624 652 65 81 55 623 696 G 0 486 30 0 0 615 41 28 0 T 0 65 42 44 631 0 600 45 0 i 2.000 0.654 1.419 1.660 1.552 1.481 1.285 1.415 2.000
AAC	8	CCCCGTCC	5342	1739	3.071		A 0 0 0 0 0 0 0 0 C 2026 0 1574 1760 1601 1816 0 2026 G 0 1672 196 0 174 210 0 0 T 0 354 256 266 251 0 2026 0 i 2.000 1.332 1.014 1.439 1.054 1.520 2.000 2.000
AAC	10	CCCCCGCCTC	2806	924	3.035		A 13 7 32 0 6 69 46 19 53 37 C 707 589 550 604 583 10 490 588 47 679 G 6 49 47 48 61 564 83 43 52 10 T 0 81 97 74 76 83 107 76 574 0 i 1.802 1.075 0.854 1.184 1.048 0.951 0.600 1.034 0.928 1.606

AAG

BC	K	Seed	Foreground	Background	Ratio	PNG (click for PDF)	Position Weight Matrix
AAG	7	CCCCGTC	320	90	3.527		A 0 0 0 0 0 0 0 C 347 347 347 347 0 0 347 G 0 0 0 0 347 0 0 T 0 0 0 0 0 347 0 i 2.000 2.000 2.000 2.000 2.000 2.000 2.000
AAG	7	CCCGTCC	621	177	3.494		A 0 0 0 0 0 0 0 C 685 685 685 0 0 384 685 G 0 0 0 685 0 0 0 T 0 0 0 0 685 301 0 i 2.000 2.000 2.000 2.000 2.000 1.011 2.000
AAG	9	CCCTCCGTC	721	225	3.195		A 20 13 14 16 0 0 26 20 0 C 442 419 400 36 423 418 32 18 462 G 0 11 21 19 12 19 372 20 0 T 0 19 27 391 27 25 32 404 0 i 1.743 1.410 1.225 1.152 1.507 1.452 0.981 1.256 2.000
AAG	7	CCCTCTC	653	214	3.042		A 0 0 0 0 0 0 0 C 688 688 418 0 688 0 688 G 0 0 270 0 0 0 0 T 0 0 0 688 0 688 0 i 2.000 2.000 1.034 2.000 2.000 2.000 2.000
AAG	8	CCCCTCTC	2218	767	2.889		A 0 0 0 0 90 0 0 0 C 1165 988 993 987 170 1089 0 1165 G 0 79 76 79 91 76 79 0 T 0 98 96 99 814 0 1086 0 i 2.000 1.235 1.250 1.232 0.661 1.652 1.642 2.000
AAG	8	ATTGTCCC	569	202	2.808		A 372 0 0 103 0 0 0 0 C 0 85 71 0 0 372 372 372 G 0 0 0 269 0 0 0 0 T 0 287 301 0 372 0 0 0 i 2.000 1.225 1.297 1.149 2.000 2.000 2.000 2.000
AAG	8	CCCCGTCC	2395	860	2.783		A 0 0 0 0 0 0 0 71 C 813 792 791 726 0 127 807 804 G 62 0 0 74 762 0 0 0 T 0 83 84 75 113 748 68 0 i 1.631 1.548 1.544 1.171 1.445 1.402 1.606 1.594
AAG	10	CCCCGTCCCC	871	319	2.725		A 0 12 0 0 0 10 0 0 0 10 C 324 253 301 261 123 46 293 277 287 314 G 0 10 0 12 117 10 10 10 0 0 T 0 49 23 51 84 258 21 37 37 0 i 2.000 0.978 1.630 1.153 0.434 1.029 1.458 1.294 1.488 1.801
AAG	9	CCCGTCCTC	707	259	2.723		A 16 0 12 23 22 12 14 22 21 C 468 455 437 38 37 435 428 31 463 G 0 14 11 394 16 14 19 14 0 T 0 15 24 29 409 23 23 417 0 i 1.790 1.613 1.396 1.018 1.146 1.373 1.303 1.210 1.742
AAG	8	CCCGTCCC	2081	770	2.700		A 77 0 0 0 0 0 0 70 C 705 702 702 0 0 695 644 655 G 0 0 80 782 82 0 59 57 T 0 80 0 0 700 87 79 0 i 1.536 1.524 1.524 2.000 1.516 1.496 1.154 1.199

AAT

BC	K	Seed	Foreground	Background	Ratio	PNG (click for PDF)	Position Weight Matrix
AAT	8	ACTGTCTA	201	155	1.295		A 59 0 0 0 0 0 0 45 C 0 59 0 16 0 59 0 14 G 0 0 0 43 0 0 0 0 T 0 0 59 0 59 0 59 0 i 2.000 2.000 2.000 1.157 2.000 2.000 2.000 1.209
AAT	9	CACATCCAC	74	60	1.230		A 0 13 0 13 0 0 0 13 0 C 13 0 13 0 0 13 13 0 13 G 0 0 0 0 0 0 0 0 0 T 0 0 0 0 13 0 0 0 0 i 2.000 2.000 2.000 2.000 2.000 2.000 2.000 2.000 2.000
AAT	8	ACATATAG	164	137	1.196		A 55 0 55 13 55 0 55 0 C 0 40 0 0 0 0 0 0 G 0 15 0 0 0 0 0 55 T 0 0 0 42 0 55 0 0 i 2.000 1.155 2.000 1.211 2.000 2.000 2.000 2.000
AAT	8	ATTAATTA	220	197	1.116		A 80 0 0 80 80 28 0 60 C 0 0 0 0 0 0 0 20 G 0 0 0 0 0 0 0 0 T 0 80 80 0 0 52 80 0 i 2.000 2.000 2.000 2.000 2.000 1.066 2.000 1.189
AAT	8	AGACAGTA	131	118	1.109		A 62 0 62 0 50 0 0 62 C 0 0 0 62 0 0 0 0 G 0 62 0 0 12 42 0 0 T 0 0 0 0 0 20 62 0 i 2.000 2.000 2.000 2.000 1.291 1.093 2.000 2.000
AAT	8	AATATATT	355	331	1.072		A 59 59 0 59 0 59 0 0 C 0 0 0 0 0 0 25 0 G 0 0 0 0 0 0 0 0 T 0 0 59 0 59 0 34 59 i 2.000 2.000 2.000 2.000 2.000 2.000 1.017 2.000
AAT	9	ACGGAAGTG	20	27	0.750		A 11 0 0 0 11 11 0 0 0 C 0 11 0 0 0 0 0 0 0 G 0 0 11 11 0 0 11 0 11 T 0 0 0 0 0 0 0 11 0 i 2.000 2.000 2.000 2.000 2.000 2.000 2.000 2.000 2.000
AAT	9	ATTGAGAGG	23	33	0.706		A 10 0 0 0 10 0 10 0 0 C 0 0 0 0 0 0 0 0 0 G 0 0 0 10 0 10 0 10 10 T 0 10 10 0 0 0 0 0 0 i 2.000 2.000 2.000 2.000 2.000 2.000 2.000 2.000 2.000
AAT	9	AGGAGGAAA	19	33	0.588		A 12 0 0 12 0 0 12 12 12 C 0 0 0 0 0 0 0 0 0 G 0 12 12 0 12 12 0 0 0 T 0 0 0 0 0 0 0 0 0 i 2.000 2.000 2.000 2.000 2.000 2.000 2.000 2.000 2.000
AAT	9	AGGGAGAGG	6	27	0.250		A 12 0 0 0 12 0 12 0 0 C 0 0 0 0 0 0 0 0 0 G 0 12 12 12 0 12 0 12 12 T 0 0 0 0 0 0 0 0 0 i 2.000 2.000 2.000 2.000 2.000 2.000 2.000 2.000 2.000

ACA

BC	K	Seed	Foreground	Background	Ratio	PNG (click for PDF)	Position Weight Matrix
ACA	8	AGTCCACA	113	53	2.111		A 111 0 0 0 0 111 0 111 C 0 0 0 111 90 0 64 0 G 0 111 0 0 21 0 21 0 T 0 0 111 0 0 0 26 0 i 2.000 2.000 2.000 2.000 1.300 2.000 0.597 2.000
ACA	8	TATATATA	162	112	1.442		A 0 198 27 198 0 198 0 198 C 0 0 29 0 0 0 31 0 G 0 0 29 0 32 0 0 0 T 198 0 113 0 166 0 167 0 i 2.000 2.000 0.334 2.000 1.362 2.000 1.374 2.000
ACA	8	ACTATATA	400	289	1.383		A 218 0 0 213 22 218 0 220 C 24 213 30 0 0 0 0 0 G 0 0 0 29 0 0 21 22 T 0 29 212 0 220 24 221 0 i 1.534 1.471 1.459 1.471 1.561 1.534 1.574 1.561
ACA	8	AATATTAA	312	231	1.349		A 178 209 28 231 31 0 203 202 C 24 22 0 0 0 0 0 0 G 0 0 0 0 0 0 28 29 T 29 0 203 0 200 231 0 0 i 0.995 1.546 1.467 2.000 1.431 2.000 1.467 1.455
ACA	9	GAAATAAAA	57	45	1.261		A 0 12 12 12 0 12 12 12 12 C 0 0 0 0 0 0 0 0 0 G 12 0 0 0 0 0 0 0 0 T 0 0 0 0 12 0 0 0 0 i 2.000 2.000 2.000 2.000 2.000 2.000 2.000 2.000 2.000
ACA	8	AGTCGGAT	214	170	1.257		A 87 0 0 0 0 27 87 0 C 0 0 0 87 0 0 0 0 G 0 87 0 0 63 60 0 0 T 0 0 87 0 24 0 0 87 i 2.000 2.000 2.000 2.000 1.150 1.106 2.000 2.000
ACA	9	AAAAGAATG	45	41	1.095		A 12 12 12 12 0 12 12 0 0 C 0 0 0 0 0 0 0 0 0 G 0 0 0 0 12 0 0 0 12 T 0 0 0 0 0 0 0 12 0 i 2.000 2.000 2.000 2.000 2.000 2.000 2.000 2.000 2.000
ACA	9	AAAGAATGT	50	47	1.062		A 12 12 12 0 12 12 0 0 0 C 0 0 0 0 0 0 0 0 0 G 0 0 0 12 0 0 0 12 0 T 0 0 0 0 0 0 12 0 12 i 2.000 2.000 2.000 2.000 2.000 2.000 2.000 2.000 2.000
ACA	9	ACTGAGTGA	35	39	0.900		A 12 0 0 0 12 0 0 0 12 C 0 12 0 0 0 0 0 0 0 G 0 0 0 12 0 12 0 12 0 T 0 0 12 0 0 0 12 0 0 i 2.000 2.000 2.000 2.000 2.000 2.000 2.000 2.000 2.000
ACA	9	AAATAAAGG	38	43	0.886		A 12 12 12 0 12 12 12 0 0 C 0 0 0 0 0 0 0 0 0 G 0 0 0 0 0 0 0 12 12 T 0 0 0 12 0 0 0 0 0 i 2.000 2.000 2.000 2.000 2.000 2.000 2.000 2.000 2.000

ACC

BC	K	Seed	Foreground	Background	Ratio	PNG (click for PDF)	Position Weight Matrix
ACC	8	GAGAGACA	114	82	1.386		A 0 114 0 141 0 141 0 141 C 0 0 0 0 23 0 113 0 G 141 27 141 0 93 0 28 0 T 0 0 0 0 25 0 0 0 i 2.000 1.295 2.000 2.000 0.735 2.000 1.281 2.000
ACC	8	ATATTATA	379	284	1.333		A 267 41 204 32 0 240 32 267 C 0 0 0 0 0 27 0 0 G 0 0 29 0 28 0 0 0 T 0 226 34 235 239 0 235 0 i 2.000 1.381 0.977 1.471 1.516 1.527 1.471 2.000
ACC	8	AAATTATT	275	211	1.302		A 236 236 208 0 31 205 32 41 C 0 0 0 0 0 0 0 0 G 0 0 28 27 0 31 0 0 T 0 0 0 209 205 0 204 195 i 2.000 2.000 1.475 1.487 1.439 1.439 1.427 1.334
ACC	8	CTAAAGTC	232	189	1.226		A 0 0 37 37 37 0 0 0 C 37 0 0 0 0 0 0 37 G 0 0 0 0 0 37 0 0 T 0 37 0 0 0 0 37 0 i 2.000 2.000 2.000 2.000 2.000 2.000 2.000 2.000
ACC	9	GTAATTGAA	58	55	1.054		A 0 0 12 12 0 0 0 12 12 C 0 0 0 0 0 0 0 0 0 G 12 0 0 0 0 0 12 0 0 T 0 12 0 0 12 12 0 0 0 i 2.000 2.000 2.000 2.000 2.000 2.000 2.000 2.000 2.000
ACC	8	CTTTTACA	301	288	1.045		A 28 0 0 27 0 95 0 95 C 67 0 0 0 0 0 95 0 G 0 0 0 0 0 0 0 0 T 0 95 95 68 95 0 0 0 i 1.125 2.000 2.000 1.139 2.000 2.000 2.000 2.000
ACC	9	AGGGCGGAG	30	33	0.912		A 11 0 0 0 0 0 0 11 0 C 0 0 0 0 11 0 0 0 0 G 0 11 11 11 0 11 11 0 11 T 0 0 0 0 0 0 0 0 0 i 2.000 2.000 2.000 2.000 2.000 2.000 2.000 2.000 2.000
ACC	9	GGGCGGAGA	35	39	0.900		A 0 0 0 0 0 0 12 0 12 C 0 0 0 12 0 0 0 0 0 G 12 12 12 0 12 12 0 12 0 T 0 0 0 0 0 0 0 0 0 i 2.000 2.000 2.000 2.000 2.000 2.000 2.000 2.000 2.000
ACC	9	AATACAATG	46	58	0.797		A 13 13 0 13 0 13 13 0 0 C 0 0 0 0 13 0 0 0 0 G 0 0 0 0 0 0 0 0 13 T 0 0 13 0 0 0 0 13 0 i 2.000 2.000 2.000 2.000 2.000 2.000 2.000 2.000 2.000
ACC	9	GGCGGGAGA	27	35	0.778		A 0 0 0 0 0 0 12 0 12 C 0 0 12 0 0 0 0 0 0 G 12 12 0 12 12 12 0 12 0 T 0 0 0 0 0 0 0 0 0 i 2.000 2.000 2.000 2.000 2.000 2.000 2.000 2.000 2.000

ACG

BC	K	Seed	Foreground	Background	Ratio	PNG (click for PDF)	Position Weight Matrix
ACG	8	TACTAGTA	148	101	1.461		A 0 46 10 0 46 0 0 46 C 0 0 36 12 0 0 0 0 G 0 0 0 0 0 46 0 0 T 46 0 0 34 0 0 46 0 i 2.000 2.000 1.245 1.172 2.000 2.000 2.000 2.000
ACG	8	ATTATAAT	155	107	1.444		A 110 0 12 110 16 110 110 12 C 0 0 0 0 0 0 0 20 G 0 10 0 0 12 0 0 0 T 0 100 98 0 82 0 0 78 i 2.000 1.561 1.503 2.000 0.931 2.000 2.000 0.852
ACG	9	CCTTTTGAC	47	35	1.333		A 0 0 0 0 0 0 0 10 0 C 10 10 0 0 0 0 0 0 10 G 0 0 0 0 0 0 10 0 0 T 0 0 10 10 10 10 0 0 0 i 2.000 2.000 2.000 2.000 2.000 2.000 2.000 2.000 2.000
ACG	8	ATAATTAT	188	162	1.160		A 73 0 73 73 0 12 73 12 C 0 0 0 0 11 0 0 0 G 0 0 0 0 0 12 0 0 T 0 73 0 0 62 49 0 61 i 2.000 2.000 2.000 2.000 1.388 0.758 2.000 1.355
ACG	8	ATTTAAAT	120	106	1.131		A 95 13 11 16 95 95 95 13 C 0 0 0 0 0 0 0 0 G 0 0 0 12 0 0 0 0 T 0 82 84 67 0 0 0 82 i 2.000 1.424 1.483 0.835 2.000 2.000 2.000 1.424
ACG	8	ATTATTAC	189	173	1.092		A 69 0 0 58 0 20 57 0 C 0 0 0 0 0 0 0 69 G 0 0 0 0 0 0 0 0 T 0 69 69 11 69 49 12 0 i 2.000 2.000 2.000 1.367 2.000 1.131 1.333 2.000
ACG	9	AGAGAAAGG	21	23	0.917		A 10 0 10 0 10 10 10 0 0 C 0 0 0 0 0 0 0 0 0 G 0 10 0 10 0 0 0 10 10 T 0 0 0 0 0 0 0 0 0 i 2.000 2.000 2.000 2.000 2.000 2.000 2.000 2.000 2.000
ACG	9	AAGGAAAGG	12	25	0.500		A 10 10 0 0 10 10 10 0 0 C 0 0 0 0 0 0 0 0 0 G 0 0 10 10 0 0 0 10 10 T 0 0 0 0 0 0 0 0 0 i 2.000 2.000 2.000 2.000 2.000 2.000 2.000 2.000 2.000

ACT

BC	K	Seed	Foreground	Background	Ratio	PNG (click for PDF)	Position Weight Matrix
ACT	8	CCCACTTC	718	334	2.146		A 0 0 0 185 0 0 0 18 C 247 229 247 33 204 27 24 229 G 0 0 0 0 18 18 0 0 T 0 18 0 29 25 202 223 0 i 2.000 1.623 2.000 0.937 1.162 1.138 1.540 1.623
ACT	8	CCCTCCAC	700	330	2.118		A 23 0 0 0 0 0 188 23 C 260 254 261 0 259 256 33 260 G 0 0 0 0 0 27 26 0 T 0 29 22 283 24 0 36 0 i 1.593 1.523 1.606 2.000 1.581 1.546 0.552 1.593
ACT	9	CTCTCCCTC	437	217	2.009		A 0 0 0 0 0 0 0 0 0 C 41 0 41 0 31 41 41 15 41 G 0 0 0 0 0 0 0 0 0 T 0 41 0 41 10 0 0 26 0 i 2.000 2.000 2.000 2.000 1.199 2.000 2.000 1.053 2.000
ACT	8	CTCCTGCC	679	340	1.994		A 0 0 0 19 0 0 0 0 C 227 32 227 190 25 29 197 227 G 0 16 0 0 0 176 14 0 T 0 179 0 18 202 22 16 0 i 2.000 1.062 2.000 1.196 1.500 1.010 1.305 2.000
ACT	8	CGTCGACG	179	103	1.731		A 0 0 0 0 0 28 0 0 C 28 0 0 28 0 0 28 0 G 0 28 0 0 28 0 0 28 T 0 0 28 0 0 0 0 0 i 2.000 2.000 2.000 2.000 2.000 2.000 2.000 2.000
ACT	9	CTCTCCCCC	309	194	1.590		A 0 0 11 0 0 0 0 12 0 C 105 15 81 90 93 93 105 93 105 G 0 0 13 0 12 12 0 0 0 T 0 90 0 15 0 0 0 0 0 i 2.000 1.408 0.997 1.408 1.487 1.487 2.000 1.487 2.000
ACT	9	AGGCGGGGG	30	84	0.365		A 47 0 0 0 10 0 0 0 0 C 0 0 0 25 0 0 0 0 0 G 0 47 47 12 37 47 47 47 47 T 0 0 0 10 0 0 0 0 0 i 2.000 2.000 2.000 0.538 1.253 2.000 2.000 2.000 2.000
ACT	9	CCCCCCCCC	11	33	0.353		A 0 0 14 0 14 14 0 0 14 C 0 0 0 0 0 0 0 0 0 G 14 14 0 14 0 0 14 14 0 T 0 0 0 0 0 0 0 0 0 i 2.000 2.000 2.000 2.000 2.000 2.000 2.000 2.000 2.000
ACT	8	AGGGAGAG	33	101	0.333		A 280 27 26 29 254 0 272 22 C 19 0 0 21 19 0 0 0 G 0 249 273 231 26 299 0 277 T 0 23 0 18 0 0 27 0 i 1.659 1.182 1.574 0.873 1.241 2.000 1.563 1.621
ACT	9	CTCCCCCCC	25	79	0.325		A 35 0 35 0 0 11 0 0 0 C 0 0 0 0 10 24 0 0 0 G 0 35 0 35 25 0 35 35 35 T 0 0 0 0 0 0 0 0 0 i 2.000 2.000 2.000 2.000 1.137 1.102 2.000 2.000 2.000

AGA

BC	K	Seed	Foreground	Background	Ratio	PNG (click for PDF)	Position Weight Matrix
AGA	8	CCCTCGTC	484	219	2.205		A 0 0 0 0 0 0 0 21 C 200 200 200 0 200 34 34 179 G 0 0 0 19 0 135 24 0 T 0 0 0 181 0 31 142 0 i 2.000 2.000 2.000 1.547 2.000 0.766 0.848 1.515
AGA	9	CTCCTCCTC	280	148	1.886		A 0 0 0 0 0 0 0 0 0 C 53 0 53 53 12 43 53 11 53 G 0 0 0 0 0 0 0 0 0 T 0 53 0 0 41 10 0 42 0 i 2.000 2.000 2.000 2.000 1.228 1.301 2.000 1.263 2.000
AGA	9	AGAAGTAGG	23	36	0.649		A 15 0 15 15 0 0 15 0 0 C 0 0 0 0 0 0 0 0 0 G 0 15 0 0 15 0 0 15 15 T 0 0 0 0 0 15 0 0 0 i 2.000 2.000 2.000 2.000 2.000 2.000 2.000 2.000 2.000
AGA	8	AGAGAGAG	58	173	0.339		A 282 32 30 308 0 288 0 300 C 26 0 0 0 0 0 0 23 G 41 317 291 41 349 27 349 26 T 0 0 28 0 0 34 0 0 i 1.109 1.558 1.185 1.478 2.000 1.158 2.000 1.275
AGA	8	AGGAGAGA	32	97	0.337		A 340 0 313 37 315 29 333 28 C 25 0 0 24 21 0 0 27 G 0 365 28 281 29 336 32 310 T 0 0 24 23 0 0 0 0 i 1.640 2.000 1.267 0.865 1.289 1.600 1.571 1.238
AGA	9	AGAGAAGGA	22	72	0.315		A 51 0 51 0 40 41 0 0 37 C 0 0 0 0 0 0 0 0 0 G 0 51 0 51 11 10 51 51 14 T 0 0 0 0 0 0 0 0 0 i 2.000 2.000 2.000 2.000 1.248 1.286 2.000 2.000 1.152
AGA	8	AGAGGAGG	40	132	0.308		A 343 0 289 0 42 284 29 0 C 0 20 28 22 0 0 24 0 G 0 298 0 296 301 34 290 343 T 0 25 26 25 0 25 0 0 i 2.000 1.309 1.215 1.287 1.464 1.169 1.225 2.000
AGA	8	GAGAGAGA	23	81	0.293		A 32 397 27 388 0 405 0 438 C 24 24 25 23 24 22 23 24 G 385 41 410 28 416 35 439 0 T 21 0 0 23 22 0 0 0 i 1.090 1.280 1.380 1.112 1.433 1.342 1.715 1.705
AGA	9	GAGAAGGGA	14	58	0.254		A 0 61 0 64 74 11 11 0 74 C 0 0 0 0 0 0 13 0 0 G 74 0 74 0 0 63 50 74 0 T 0 13 0 10 0 0 0 0 0 i 2.000 1.329 2.000 1.429 2.000 1.394 0.768 2.000 2.000
AGA	9	AGGGGAGAG	23	94	0.253		A 41 0 0 13 0 28 0 41 0 C 0 0 0 0 0 0 0 0 0 G 0 41 41 28 41 0 41 0 41 T 0 0 0 0 0 13 0 0 0 i 2.000 2.000 2.000 1.099 2.000 1.099 2.000 2.000 2.000

AGC

BC	K	Seed	Foreground	Background	Ratio	PNG (click for PDF)	Position Weight Matrix
AGC	7	CTCTCTC	102	30	3.323		A 0 0 0 0 0 0 0 C 117 0 117 0 117 0 117 G 0 0 0 0 0 0 0 T 0 117 0 117 0 117 0 i 2.000 2.000 2.000 2.000 2.000 2.000 2.000
AGC	8	CTCCTCTC	350	140	2.489		A 22 0 16 0 0 20 16 15 C 339 27 289 22 324 26 296 346 G 0 0 26 0 16 19 23 0 T 0 334 30 339 21 296 26 0 i 1.669 1.616 0.972 1.669 1.422 1.037 1.039 1.751
AGC	9	CTCTCTCTC	372	152	2.438		A 0 0 0 0 0 0 0 0 0 C 40 0 40 14 40 0 29 0 40 G 0 0 0 0 0 0 0 0 0 T 0 40 0 26 0 40 11 40 0 i 2.000 2.000 2.000 1.066 2.000 2.000 1.151 2.000 2.000
AGC	8	CTCTTCTC	422	175	2.403		A 20 0 0 21 15 0 21 0 C 327 26 321 36 22 306 24 347 G 0 0 0 20 19 17 19 0 T 0 321 26 270 291 24 283 0 i 1.682 1.616 1.616 0.897 1.109 1.360 1.019 2.000
AGC	9	CTCTTCTCC	161	67	2.382		A 0 0 0 0 0 0 0 0 0 C 17 0 17 0 0 17 0 17 17 G 0 0 0 0 0 0 0 0 0 T 0 17 0 17 17 0 17 0 0 i 2.000 2.000 2.000 2.000 2.000 2.000 2.000 2.000 2.000
AGC	8	CCTCTCTC	371	156	2.369		A 17 21 16 0 0 17 18 20 C 341 310 18 309 31 322 33 338 G 0 0 16 24 21 19 0 0 T 0 27 308 25 306 0 307 0 i 1.724 1.299 1.196 1.287 1.261 1.429 1.276 1.689
AGC	7	AGAGAGG	11	15	0.750		A 109 0 109 0 109 0 0 C 0 0 0 0 0 0 0 G 0 109 0 109 0 109 109 T 0 0 0 0 0 0 0 i 2.000 2.000 2.000 2.000 2.000 2.000 2.000
AGC	7	AGGGAGA	11	18	0.632		A 116 0 0 0 116 0 116 C 0 0 0 0 0 0 0 G 0 116 116 116 0 116 0 T 0 0 0 0 0 0 0 i 2.000 2.000 2.000 2.000 2.000 2.000 2.000
AGC	7	GACGGGA	209	407	0.515		A 0 88 0 0 0 0 88 C 0 0 88 0 0 0 0 G 88 0 0 88 88 88 0 T 0 0 0 0 0 0 0 i 2.000 2.000 2.000 2.000 2.000 2.000 2.000
AGC	8	AGAGAGAG	25	55	0.464		A 355 28 325 19 318 0 302 19 C 14 0 14 24 18 19 22 23 G 0 322 30 326 33 350 23 327 T 0 19 0 0 0 0 22 0 i 1.767 1.326 1.365 1.365 1.291 1.707 1.029 1.376

AGG

BC	K	Seed	Foreground	Background	Ratio	PNG (click for PDF)	Position Weight Matrix
AGG	8	CCCTCTCG	285	124	2.288		A 0 0 0 0 0 0 0 0 C 123 123 94 0 101 0 123 37 G 0 0 0 0 0 0 0 86 T 0 0 29 123 22 123 0 0 i 2.000 2.000 1.212 2.000 1.322 2.000 2.000 1.118
AGG	8	CTCCTCTC	917	410	2.234		A 0 0 0 0 25 0 0 0 C 334 41 296 278 0 286 36 334 G 0 24 0 22 23 20 0 0 T 0 269 38 34 286 28 298 0 i 2.000 1.104 1.489 1.186 1.263 1.265 1.507 2.000
AGG	8	CCCCTTCC	753	340	2.211		A 0 0 0 26 23 29 0 0 C 253 228 230 29 230 0 0 253 G 0 0 0 0 0 193 31 0 T 0 25 23 198 0 31 222 0 i 2.000 1.535 1.561 1.028 1.561 0.973 1.463 2.000
AGG	8	CCCCTTCG	352	160	2.193		A 0 0 0 0 0 23 0 0 C 155 155 131 133 0 0 155 49 G 0 0 0 0 0 0 0 106 T 0 0 24 22 155 132 0 0 i 2.000 2.000 1.378 1.411 2.000 1.394 2.000 1.100
AGG	8	CTCTCTCC	688	325	2.113		A 27 29 0 0 25 0 32 0 C 342 37 369 0 287 37 311 369 G 0 0 0 25 26 29 0 0 T 0 303 0 344 31 303 26 0 i 1.622 1.145 2.000 1.643 0.885 1.145 1.217 2.000
AGG	9	CCCCCTTCC	292	192	1.518		A 0 0 0 0 10 0 0 0 0 C 71 58 71 71 61 12 10 71 71 G 0 0 0 0 0 10 0 0 0 T 0 13 0 0 0 49 61 0 0 i 2.000 1.313 2.000 2.000 1.414 0.799 1.414 2.000 2.000
AGG	9	ATAGAAGAG	39	97	0.408		A 50 0 50 0 50 40 0 50 0 C 0 10 0 0 0 10 0 0 0 G 0 14 0 50 0 0 50 0 50 T 0 26 0 0 0 0 0 0 0 i 2.000 0.531 2.000 2.000 2.000 1.278 2.000 2.000 2.000
AGG	9	GGGAAGGGA	20	61	0.339		A 0 0 0 66 52 0 0 15 66 C 10 0 0 0 14 10 0 0 0 G 56 66 66 0 0 56 66 51 0 T 0 0 0 0 0 0 0 0 0 i 1.386 2.000 2.000 2.000 1.254 1.386 2.000 1.227 2.000
AGG	9	AGAGGAGAG	19	66	0.299		A 31 0 31 0 14 31 0 31 0 C 0 0 0 0 0 0 0 0 0 G 0 31 0 31 17 0 31 0 31 T 0 0 0 0 0 0 0 0 0 i 2.000 2.000 2.000 2.000 1.007 2.000 2.000 2.000 2.000
AGG	9	AGGGGAAGG	12	66	0.194		A 81 0 12 0 0 68 71 0 15 C 0 0 0 0 12 0 10 0 0 G 0 81 69 81 69 13 0 81 66 T 0 0 0 0 0 0 0 0 0 i 2.000 2.000 1.395 2.000 1.395 1.365 1.461 2.000 1.309

AGT

BC	K	Seed	Foreground	Background	Ratio	PNG (click for PDF)	Position Weight Matrix
AGT	8	CTAGTACA	1229	783	1.569		A 0 0 147 0 0 147 0 147 C 147 0 0 0 0 0 147 0 G 0 0 0 147 0 0 0 0 T 0 147 0 0 147 0 0 0 i 2.000 2.000 2.000 2.000 2.000 2.000 2.000 2.000
AGT	9	CCCGGGTCA	463	304	1.521		A 0 0 22 0 0 0 0 0 136 C 114 115 114 0 0 29 15 136 0 G 22 0 0 136 136 107 0 0 0 T 0 21 0 0 0 0 121 0 0 i 1.361 1.379 1.361 2.000 2.000 1.252 1.499 2.000 2.000
AGT	8	ACTAGTAC	1184	792	1.494		A 153 0 0 153 0 0 153 0 C 0 153 0 0 0 0 0 153 G 0 0 0 0 153 0 0 0 T 0 0 153 0 0 153 0 0 i 2.000 2.000 2.000 2.000 2.000 2.000 2.000 2.000
AGT	10	GGCAGAGGGA	727	497	1.462		A 0 0 0 0 0 0 0 0 0 94 C 145 23 122 52 134 115 24 134 145 51 G 0 0 0 0 0 10 0 11 0 0 T 0 122 23 93 11 20 121 0 0 0 i 2.000 1.369 1.369 1.058 1.613 1.074 1.353 1.613 2.000 1.064
AGT	10	CCCCTCTCCG	748	518	1.443		A 0 0 10 13 21 0 0 0 0 21 C 176 165 166 140 10 155 13 154 161 62 G 0 0 0 10 21 0 0 0 0 93 T 0 11 0 13 124 21 163 22 15 0 i 2.000 1.663 1.685 0.947 0.677 1.473 1.620 1.456 1.580 0.618
AGT	10	CACTCCTCTC	761	566	1.344		A 0 96 0 0 14 11 0 10 10 0 C 150 44 150 59 126 118 23 130 21 150 G 0 0 0 0 0 10 11 10 0 0 T 0 10 0 91 10 11 116 0 119 0 i 2.000 0.808 2.000 1.033 1.209 0.914 1.022 1.300 1.077 2.000
AGT	8	TAGTACTA	1050	841	1.248		A 0 112 0 0 112 0 0 112 C 0 0 0 0 0 112 0 0 G 0 0 112 0 0 0 0 0 T 112 0 0 112 0 0 112 0 i 2.000 2.000 2.000 2.000 2.000 2.000 2.000 2.000
AGT	8	ACGTCGAT	891	725	1.229		A 87 0 0 0 0 0 87 0 C 0 87 0 0 87 0 0 0 G 0 0 87 0 0 87 0 0 T 0 0 0 87 0 0 0 87 i 2.000 2.000 2.000 2.000 2.000 2.000 2.000 2.000
AGT	9	ACGCTGTCG	462	380	1.215		A 63 0 0 0 0 0 0 0 0 C 0 63 0 63 0 0 14 63 0 G 0 0 38 0 0 63 0 0 63 T 0 0 25 0 63 0 49 0 0 i 2.000 2.000 1.031 2.000 2.000 2.000 1.236 2.000 2.000
AGT	9	CGACTAGTA	419	352	1.190		A 24 0 55 0 0 55 0 0 55 C 31 0 0 55 0 0 0 0 0 G 0 55 0 0 0 0 55 0 0 T 0 0 0 0 55 0 0 55 0 i 1.012 2.000 2.000 2.000 2.000 2.000 2.000 2.000 2.000

ATA

BC	K	Seed	Foreground	Background	Ratio	PNG (click for PDF)	Position Weight Matrix
ATA	11	CCGCCCTTTCG	573	178	3.207		A 0 0 0 0 0 0 0 0 0 0 0 C 10 10 0 10 10 10 0 0 0 10 0 G 0 0 10 0 0 0 0 0 0 0 10 T 0 0 0 0 0 0 10 10 10 0 0 i 2.000 2.000 2.000 2.000 2.000 2.000 2.000 2.000 2.000 2.000 2.000
ATA	10	CCTCTCTCTC	1107	372	2.971		A 31 10 10 0 51 12 24 13 48 12 C 682 619 149 649 145 611 138 628 147 691 G 0 35 36 20 52 57 48 25 34 10 T 0 49 518 44 465 33 503 47 484 0 i 1.742 1.258 0.889 1.484 0.583 1.213 0.760 1.305 0.680 1.771
ATA	7	CTCTCTC	2883	993	2.901		A 0 0 0 0 0 0 0 C 2103 576 2103 608 2103 0 2103 G 0 0 0 388 0 0 0 T 0 1527 0 1107 0 2103 0 i 2.000 1.153 2.000 0.545 2.000 2.000 2.000
ATA	8	CCCCCGTC	3664	1288	2.843		A 0 0 0 0 0 0 0 0 C 1159 152 1084 1055 1058 162 137 1159 G 0 85 75 0 0 865 84 0 T 0 922 0 104 101 132 938 0 i 2.000 1.077 1.654 1.564 1.573 0.931 1.114 2.000
ATA	10	CGTCCCCCTC	1230	438	2.804		A 0 24 12 10 35 12 21 10 37 11 C 664 239 145 594 537 603 571 550 76 653 G 0 286 62 11 39 12 39 48 34 0 T 0 115 445 49 53 37 33 56 517 0 i 2.000 0.335 0.710 1.390 0.997 1.432 1.200 1.109 0.909 1.878
ATA	8	CCCTCGTC	3442	1241	2.772		A 0 0 0 92 0 0 0 0 C 1122 1018 1042 152 1122 179 130 1122 G 0 0 80 0 0 798 107 0 T 0 104 0 878 0 145 885 0 i 2.000 1.555 1.629 1.037 2.000 0.846 1.046 2.000
ATA	7	CCCCGTC	3409	1259	2.706		A 0 0 0 0 0 0 0 C 1837 2154 0 2154 0 1366 2154 G 317 0 0 0 1576 370 0 T 0 0 2154 0 578 418 0 i 1.397 2.000 2.000 2.000 1.161 0.688 2.000
ATA	11	CTCCCTCCCTC	1037	384	2.696		A 0 0 0 0 0 0 0 0 0 0 0 C 11 0 11 11 11 0 11 11 11 0 11 G 0 0 0 0 0 0 0 0 0 0 0 T 0 11 0 0 0 11 0 0 0 11 0 i 2.000 2.000 2.000 2.000 2.000 2.000 2.000 2.000 2.000 2.000 2.000
ATA	7	AGGGGAG	3980	1476	2.695		A 0 0 0 0 0 0 0 C 2210 1464 1792 2210 0 0 2210 G 0 303 0 0 1646 0 0 T 0 443 418 0 564 2210 0 i 2.000 0.749 1.300 2.000 1.181 2.000 2.000
ATA	9	CCGTCCCTC	1065	400	2.658		A 0 29 0 29 17 23 0 24 18 C 596 514 59 40 540 529 551 45 578 G 0 27 499 28 18 23 17 23 0 T 0 26 38 499 21 21 28 504 0 i 2.000 1.204 1.202 1.104 1.402 1.315 1.542 1.146 1.805

ATC

BC	K	Seed	Foreground	Background	Ratio	PNG (click for PDF)	Position Weight Matrix
ATC	7	CTCTCTC	284	87	3.239		A 0 0 0 0 0 0 0 C 305 0 305 0 305 0 305 G 0 0 0 0 0 0 0 T 0 305 0 305 0 305 0 i 2.000 2.000 2.000 2.000 2.000 2.000 2.000
ATC	7	CCCCTCG	276	88	3.112		A 0 0 0 0 0 0 0 C 302 302 302 302 0 302 0 G 0 0 0 0 0 0 302 T 0 0 0 0 302 0 0 i 2.000 2.000 2.000 2.000 2.000 2.000 2.000
ATC	8	CCCCTCGC	1161	415	2.793		A 0 0 0 0 0 0 0 67 C 477 477 417 413 0 429 0 359 G 0 0 0 0 0 0 382 51 T 0 0 60 64 477 48 95 0 i 2.000 2.000 1.454 1.431 2.000 1.529 1.280 0.949
ATC	7	CCCCGTC	2012	744	2.702		A 0 0 0 0 0 0 0 C 1133 892 1133 877 0 0 1133 G 0 0 0 0 791 0 0 T 0 241 0 256 342 1133 0 i 2.000 1.253 2.000 1.229 1.116 2.000 2.000
ATC	7	CCGTCTC	975	368	2.645		A 0 0 0 0 0 0 0 C 785 785 0 254 785 276 785 G 0 0 785 0 0 0 0 T 0 0 0 531 0 509 0 i 2.000 2.000 2.000 1.092 2.000 1.065 2.000
ATC	9	CCCCGTCCC	580	227	2.548		A 0 26 19 16 23 18 19 16 17 C 472 435 434 425 33 29 442 446 459 G 16 13 15 18 401 17 0 0 12 T 0 14 20 29 31 424 27 26 0 i 1.792 1.340 1.324 1.247 1.044 1.237 1.457 1.494 1.617
ATC	8	CCTCTCTC	1569	618	2.536		A 0 0 0 0 64 0 71 0 C 993 841 95 932 96 926 99 993 G 0 65 67 61 71 67 60 0 T 0 87 831 0 762 0 763 0 i 2.000 1.232 1.199 1.667 0.854 1.644 0.860 2.000
ATC	10	CCCCCGTCCC	650	258	2.514		A 0 0 0 0 0 0 0 0 0 0 C 83 73 83 83 73 10 27 71 72 83 G 0 0 0 0 0 37 10 0 0 0 T 0 10 0 0 10 36 46 12 11 0 i 2.000 1.469 2.000 2.000 1.469 0.590 0.633 1.404 1.436 2.000
ATC	10	CCCCCCCCTC	755	313	2.408		A 0 10 0 0 0 0 12 0 31 0 C 286 232 276 225 223 227 219 205 42 286 G 0 10 0 31 21 10 33 32 0 0 T 0 34 10 30 42 49 22 49 213 0 i 2.000 1.052 1.781 1.039 1.037 1.130 0.869 0.866 0.929 2.000
ATC	8	CCGTCTCC	1315	547	2.401		A 0 0 0 0 0 0 43 0 C 465 465 95 75 465 73 370 465 G 0 0 370 0 0 43 0 0 T 0 0 0 390 0 349 52 0 i 2.000 2.000 1.270 1.363 2.000 0.952 1.067 2.000

ATG

BC	K	Seed	Foreground	Background	Ratio	PNG (click for PDF)	Position Weight Matrix
ATG	7	CCTCCCG	105	30	3.419		A 0 0 0 0 0 0 0 C 105 105 0 105 105 105 0 G 0 0 0 0 0 0 105 T 0 0 105 0 0 0 0 i 2.000 2.000 2.000 2.000 2.000 2.000 2.000
ATG	7	CTCGCTC	168	54	3.073		A 0 0 0 0 0 0 0 C 185 0 185 0 185 0 185 G 0 0 0 89 0 0 0 T 0 185 0 96 0 185 0 i 2.000 2.000 2.000 1.001 2.000 2.000 2.000
ATG	7	CCCCTTC	353	124	2.832		A 0 0 0 0 0 0 0 C 307 307 204 307 0 0 307 G 0 0 0 0 83 0 0 T 0 0 103 0 224 307 0 i 2.000 2.000 1.080 2.000 1.158 2.000 2.000
ATG	8	CTCCTCTC	403	148	2.711		A 18 20 15 20 22 19 21 0 C 396 29 379 354 33 357 35 414 G 0 19 0 17 22 17 0 0 T 0 346 20 23 337 21 358 0 i 1.742 1.100 1.499 1.175 1.017 1.204 1.299 2.000
ATG	9	CCTCCTCTC	504	186	2.701		A 0 0 0 0 0 0 0 0 0 C 37 37 11 37 37 0 37 10 37 G 0 0 0 0 0 0 0 0 0 T 0 0 26 0 0 37 0 27 0 i 2.000 2.000 1.122 2.000 2.000 2.000 2.000 1.158 2.000
ATG	7	CCTCCTC	198	73	2.689		A 0 0 0 0 0 0 0 C 219 219 0 219 116 0 219 G 0 0 0 0 0 0 0 T 0 0 219 0 103 219 0 i 2.000 2.000 2.000 2.000 1.003 2.000 2.000
ATG	9	CCCCCTCCC	581	238	2.435		A 13 10 0 0 0 0 0 0 0 C 145 148 148 147 134 14 133 147 145 G 0 0 0 0 13 10 10 0 13 T 0 0 10 11 11 134 15 11 0 i 1.590 1.660 1.660 1.635 1.234 1.237 1.216 1.635 1.590
ATG	8	CCCCCTCC	616	254	2.420		A 26 32 24 25 23 30 26 20 C 615 577 577 609 576 45 567 624 G 24 27 25 0 30 31 33 21 T 0 29 39 31 36 559 39 0 i 1.540 1.227 1.231 1.500 1.223 1.119 1.166 1.604
ATG	8	CCCCTCCC	598	249	2.396		A 27 26 29 19 22 0 27 27 C 593 550 567 561 45 584 563 587 G 22 31 22 34 31 22 23 28 T 0 35 24 28 544 36 29 0 i 1.535 1.182 1.296 1.258 1.151 1.476 1.268 1.493
ATG	9	CCCCTCCCC	402	176	2.277		A 10 0 0 0 0 0 0 0 0 C 110 110 120 96 14 109 108 120 107 G 0 0 0 11 10 0 12 0 13 T 0 10 0 13 96 11 0 0 0 i 1.586 1.586 2.000 1.079 1.082 1.558 1.531 2.000 1.505

ATT

BC	K	Seed	Foreground	Background	Ratio	PNG (click for PDF)	Position Weight Matrix
ATT	7	CGTCCTC	275	89	3.067		A 0 0 0 0 0 0 0 C 297 161 0 297 297 0 297 G 0 136 0 0 0 0 0 T 0 0 297 0 0 297 0 i 2.000 1.005 2.000 2.000 2.000 2.000 2.000
ATT	7	CTCCCTC	285	93	3.043		A 0 0 0 0 0 0 0 C 287 0 287 287 168 0 287 G 0 0 0 0 119 0 0 T 0 287 0 0 0 287 0 i 2.000 2.000 2.000 2.000 1.021 2.000 2.000
ATT	10	CCCCTTTTCC	74	24	3.000		A 0 0 0 0 0 0 0 0 0 0 C 10 10 10 10 0 0 0 0 10 10 G 0 0 0 0 0 0 0 0 0 0 T 0 0 0 0 10 10 10 10 0 0 i 2.000 2.000 2.000 2.000 2.000 2.000 2.000 2.000 2.000 2.000
ATT	7	CCTCCTC	261	97	2.673		A 0 0 0 0 0 0 0 C 283 283 0 283 283 0 283 G 0 0 122 0 0 0 0 T 0 0 161 0 0 283 0 i 2.000 2.000 1.014 2.000 2.000 2.000 2.000
ATT	8	CCGTCCTC	838	330	2.535		A 0 0 31 0 21 22 24 0 C 366 346 41 26 319 322 32 366 G 0 20 257 23 0 0 0 0 T 0 0 37 317 26 22 310 0 i 2.000 1.694 0.652 1.298 1.320 1.350 1.232 2.000
ATT	9	CCTCCCTCC	606	243	2.488		A 0 0 0 0 0 0 13 0 0 C 149 137 18 137 138 125 0 124 149 G 0 12 0 0 0 13 11 15 0 T 0 0 131 12 11 11 125 10 0 i 2.000 1.596 1.468 1.596 1.620 1.203 1.203 1.184 2.000
ATT	8	CCTCCCTC	615	251	2.444		A 33 36 35 0 29 0 32 23 C 606 524 58 602 549 576 44 616 G 0 42 26 0 25 30 28 0 T 0 37 520 37 36 33 535 0 i 1.707 1.035 1.026 1.681 1.193 1.437 1.106 1.776
ATT	9	CTCTCCTCC	418	177	2.354		A 0 0 0 0 0 14 0 0 0 C 113 14 113 17 101 89 14 102 113 G 0 0 0 0 0 0 0 11 0 T 0 99 0 96 12 10 99 0 0 i 2.000 1.460 2.000 1.389 1.512 1.046 1.460 1.539 2.000
ATT	9	CCCCCCCTC	515	226	2.273		A 0 13 0 11 0 11 13 10 0 C 220 195 190 194 189 196 195 14 220 G 0 0 13 0 15 0 12 13 0 T 0 12 17 15 16 13 0 183 0 i 2.000 1.376 1.291 1.360 1.273 1.394 1.376 1.082 2.000
ATT	8	CCTCCTCC	613	270	2.266		A 30 32 31 0 29 29 33 30 C 633 556 46 613 571 44 597 605 G 0 34 27 22 33 25 0 28 T 0 41 559 28 30 565 33 0 i 1.734 1.108 1.131 1.540 1.199 1.168 1.433 1.485

CAA

BC	K	Seed	Foreground	Background	Ratio	PNG (click for PDF)	Position Weight Matrix
CAA	8	CCCCCTCA	332	153	2.162		A 16 0 13 0 0 21 0 260 C 292 267 267 285 275 22 275 26 G 0 21 0 0 18 0 17 22 T 0 20 28 23 15 265 16 0 i 1.705 1.301 1.314 1.617 1.402 1.277 1.402 1.221
CAA	9	CCCTCCCAA	299	155	1.923		A 0 0 0 0 0 0 0 33 23 C 33 33 33 0 33 23 33 0 10 G 0 0 0 0 0 0 0 0 0 T 0 0 0 33 0 10 0 0 0 i 2.000 2.000 2.000 2.000 2.000 1.115 2.000 2.000 1.115
CAA	9	CTCCCTTTC	110	58	1.881		A 0 0 0 0 0 0 0 0 0 C 13 0 13 13 13 0 0 0 13 G 0 0 0 0 0 0 0 0 0 T 0 13 0 0 0 13 13 13 0 i 2.000 2.000 2.000 2.000 2.000 2.000 2.000 2.000 2.000
CAA	8	CCCCCCTC	354	189	1.868		A 25 25 0 19 18 0 22 0 C 347 305 334 311 314 328 0 372 G 0 16 18 14 19 20 19 0 T 0 26 20 28 21 24 331 0 i 1.645 1.040 1.422 1.106 1.129 1.358 1.390 2.000
CAA	8	CCGCTCCC	554	310	1.785		A 0 0 23 0 0 0 0 16 C 217 217 34 179 22 200 217 201 G 0 0 137 22 15 0 0 0 T 0 0 23 16 180 17 0 0 i 2.000 2.000 0.476 1.159 1.175 1.604 2.000 1.620
CAA	8	CTCCTCCC	453	269	1.681		A 21 17 14 18 0 16 21 0 C 245 34 234 224 28 250 226 266 G 0 0 0 0 0 0 0 0 T 0 215 18 24 238 0 19 0 i 1.602 1.119 1.351 1.215 1.515 1.672 1.239 2.000
CAA	9	CCTCCTCCC	144	89	1.611		A 0 0 0 0 0 0 0 0 0 C 13 13 0 13 13 0 13 13 13 G 0 0 0 0 0 0 0 0 0 T 0 0 13 0 0 13 0 0 0 i 2.000 2.000 2.000 2.000 2.000 2.000 2.000 2.000 2.000
CAA	9	CACTCCCCC	273	179	1.522		A 0 12 0 0 0 0 0 0 0 C 22 10 22 0 22 22 22 22 22 G 0 0 0 0 0 0 0 0 0 T 0 0 0 22 0 0 0 0 0 i 2.000 1.006 2.000 2.000 2.000 2.000 2.000 2.000 2.000
CAA	8	GTGTGGGA	38	73	0.527		A 16 20 0 0 14 14 0 121 C 0 0 0 0 0 0 0 0 G 105 0 121 26 107 107 121 0 T 0 101 0 95 0 0 0 0 i 1.436 1.353 2.000 1.249 1.483 1.483 2.000 2.000
CAA	9	GGGGGAGGA	36	79	0.463		A 0 0 0 0 0 24 0 0 34 C 0 0 0 0 0 10 0 0 0 G 34 34 34 34 34 0 24 34 0 T 0 0 0 0 0 0 10 0 0 i 2.000 2.000 2.000 2.000 2.000 1.126 1.126 2.000 2.000

CAC

BC	K	Seed	Foreground	Background	Ratio	PNG (click for PDF)	Position Weight Matrix
CAC	9	CCGTCCCTC	93	40	2.293		A 0 0 0 0 0 0 0 0 0 C 11 11 0 0 11 11 11 0 11 G 0 0 11 0 0 0 0 0 0 T 0 0 0 11 0 0 0 11 0 i 2.000 2.000 2.000 2.000 2.000 2.000 2.000 2.000 2.000
CAC	8	CCTCTTTC	519	245	2.114		A 0 0 0 0 12 16 0 0 C 162 146 21 148 18 21 15 162 G 0 0 0 0 0 0 0 0 T 0 16 141 14 132 125 147 0 i 2.000 1.535 1.444 1.576 1.129 0.999 1.555 2.000
CAC	8	CCTCACTC	458	223	2.049		A 0 0 0 0 134 17 12 12 C 194 181 14 181 24 165 14 182 G 0 0 0 13 15 0 0 0 T 0 13 180 0 21 12 168 0 i 2.000 1.645 1.626 1.645 0.626 1.245 1.298 1.665
CAC	7	CTCCGTC	935	466	2.004		A 0 0 0 0 0 0 0 C 72 0 72 72 0 0 72 G 0 0 0 0 72 0 0 T 0 72 0 0 0 72 0 i 2.000 2.000 2.000 2.000 2.000 2.000 2.000
CAC	8	CTCCTCTC	350	175	1.994		A 0 19 0 18 13 0 12 18 C 236 22 214 205 25 223 19 218 G 0 0 0 0 13 13 0 0 T 0 195 22 13 185 0 205 0 i 2.000 1.161 1.553 1.310 0.921 1.692 1.312 1.611
CAC	7	CCCGTCC	971	505	1.921		A 0 0 0 0 0 0 0 C 73 73 73 0 0 73 73 G 0 0 0 73 0 0 0 T 0 0 0 0 73 0 0 i 2.000 2.000 2.000 2.000 2.000 2.000 2.000
CAC	9	CCCCTCTCC	123	66	1.851		A 0 0 0 0 0 0 0 0 0 C 12 12 12 12 0 12 0 12 12 G 0 0 0 0 0 0 0 0 0 T 0 0 0 0 12 0 12 0 0 i 2.000 2.000 2.000 2.000 2.000 2.000 2.000 2.000 2.000
CAC	8	CCCTCTCC	316	181	1.742		A 13 0 0 13 0 13 0 0 C 218 214 195 23 213 23 213 218 G 0 0 14 13 0 0 0 13 T 0 17 22 182 18 195 18 0 i 1.688 1.621 1.225 0.930 1.605 1.229 1.605 1.688
CAC	9	TCTCCCCCA	99	58	1.695		A 0 0 0 0 0 0 0 0 12 C 0 12 0 12 12 12 12 12 0 G 0 0 0 0 0 0 0 0 0 T 12 0 12 0 0 0 0 0 0 i 2.000 2.000 2.000 2.000 2.000 2.000 2.000 2.000 2.000
CAC	7	CGGGCCA	400	372	1.075		A 0 0 0 0 0 0 63 C 63 0 0 0 63 63 0 G 0 63 63 63 0 0 0 T 0 0 0 0 0 0 0 i 2.000 2.000 2.000 2.000 2.000 2.000 2.000

CAG

BC	K	Seed	Foreground	Background	Ratio	PNG (click for PDF)	Position Weight Matrix
CAG	7	CCCCTTC	414	130	3.168		A 0 0 0 0 0 0 0 C 332 332 332 184 0 0 332 G 0 0 0 66 79 0 0 T 0 0 0 82 253 332 0 i 2.000 2.000 2.000 0.566 1.208 2.000 2.000
CAG	9	CCCTCCCCC	289	96	2.990		A 0 0 0 0 0 0 0 0 0 C 24 24 24 24 11 0 24 0 24 G 0 0 0 0 0 0 0 0 0 T 0 0 0 0 13 24 0 24 0 i 2.000 2.000 2.000 2.000 1.005 2.000 2.000 2.000 2.000
CAG	9	CCCCCGTTC	360	121	2.959		A 0 0 0 0 0 0 0 0 0 C 37 37 37 37 37 10 0 13 37 G 0 0 0 0 0 27 0 0 0 T 0 0 0 0 0 0 37 24 0 i 2.000 2.000 2.000 2.000 2.000 1.158 2.000 1.065 2.000
CAG	7	CCCGTCC	384	132	2.895		A 0 0 0 0 0 0 0 C 262 199 262 0 0 196 209 G 0 0 0 262 0 0 53 T 0 63 0 0 262 66 0 i 2.000 1.204 2.000 2.000 2.000 1.186 1.274
CAG	8	CCCCCTTC	393	141	2.775		A 19 16 20 13 18 21 17 0 C 384 353 345 356 331 26 28 403 G 0 14 16 19 30 29 0 0 T 0 20 22 15 24 327 358 0 i 1.726 1.264 1.179 1.298 1.045 1.005 1.388 2.000
CAG	9	CTTCCCCTC	378	142	2.650		A 0 0 0 0 0 0 0 0 0 C 51 11 14 51 51 51 51 0 51 G 0 0 11 0 0 0 0 0 0 T 0 40 26 0 0 0 0 51 0 i 2.000 1.248 0.515 2.000 2.000 2.000 2.000 2.000 2.000
CAG	7	CCCTCTC	499	194	2.564		A 0 0 0 0 0 0 0 C 322 250 260 0 240 0 322 G 0 0 62 0 0 0 0 T 0 72 0 322 82 322 0 i 2.000 1.233 1.293 2.000 1.181 2.000 2.000
CAG	8	AGAAGGGG	361	143	2.514		A 17 13 15 16 17 18 0 0 C 355 26 315 320 320 318 29 372 G 0 22 18 16 15 16 17 0 T 0 311 24 20 20 20 326 0 i 1.732 1.105 1.144 1.196 1.196 1.173 1.343 2.000
CAG	8	CCCCTCCC	472	193	2.438		A 16 17 16 17 25 0 17 21 C 470 442 453 433 36 453 426 462 G 17 18 16 24 20 22 26 20 T 0 26 18 29 422 28 34 0 i 1.585 1.278 1.376 1.202 1.115 1.435 1.148 1.511
CAG	9	CCCCTCCCC	360	165	2.175		A 0 0 0 0 0 0 0 0 0 C 39 39 39 27 11 39 39 39 39 G 0 0 0 0 0 0 0 0 0 T 0 0 0 12 28 0 0 0 0 i 2.000 2.000 2.000 1.110 1.142 2.000 2.000 2.000 2.000

CAT

BC	K	Seed	Foreground	Background	Ratio	PNG (click for PDF)	Position Weight Matrix
CAT	8	CCGTCTCC	561	160	3.491		A 0 0 0 0 0 0 0 166 C 615 615 0 0 615 0 615 270 G 0 0 615 0 0 0 0 179 T 0 0 0 615 0 615 0 0 i 2.000 2.000 2.000 2.000 2.000 2.000 2.000 0.450
CAT	8	CCCCTTCG	332	100	3.297		A 0 0 0 0 0 0 0 0 C 396 396 396 0 0 212 396 0 G 0 0 0 396 0 0 0 396 T 0 0 0 0 396 184 0 0 i 2.000 2.000 2.000 2.000 2.000 1.004 2.000 2.000
CAT	8	CCTGTCTC	627	195	3.204		A 0 0 0 0 0 0 0 0 C 618 618 618 434 0 0 618 0 G 0 0 0 184 198 0 0 618 T 0 0 0 0 420 618 0 0 i 2.000 2.000 2.000 1.121 1.095 2.000 2.000 2.000
CAT	8	CCCGTCTC	2290	829	2.760		A 0 0 0 0 0 0 0 177 C 1143 1143 904 0 277 1143 0 966 G 0 0 0 1143 0 0 184 0 T 0 0 239 0 866 0 959 0 i 2.000 2.000 1.260 2.000 1.201 2.000 1.363 1.378
CAT	9	CCTCATGTC	1876	792	2.367		A 0 0 0 0 46 0 0 0 0 C 99 99 0 99 53 0 0 0 99 G 0 0 0 0 0 0 99 0 0 T 0 0 99 0 0 99 0 99 0 i 2.000 2.000 2.000 2.000 1.004 2.000 2.000 2.000 2.000
CAT	10	CTCTCCCCTC	2134	914	2.333		A 96 77 68 74 63 110 112 105 93 112 C 1278 104 1081 90 1097 1042 1017 1012 40 1254 G 0 104 154 120 141 98 106 130 73 8 T 0 1089 71 1090 73 124 139 127 1168 0 i 1.635 0.937 0.938 0.943 0.975 0.821 0.764 0.752 1.164 1.542
CAT	10	CTCCTCTCGC	1754	766	2.288		A 20 42 23 35 65 22 31 21 125 71 C 932 174 834 801 111 815 92 819 121 871 G 8 62 42 38 58 64 61 40 582 18 T 0 682 61 86 726 59 776 80 132 0 i 1.785 0.750 1.245 1.112 0.828 1.167 1.015 1.194 0.409 1.487
CAT	9	CTCCGGTCA	945	440	2.145		A 0 0 0 0 0 0 0 0 125 C 180 0 180 180 43 0 0 180 55 G 0 0 0 0 137 142 0 0 0 T 0 180 0 0 0 38 180 0 0 i 2.000 2.000 2.000 2.000 1.207 1.256 2.000 2.000 1.112
CAT	9	CCCGGGTCA	871	430	2.023		A 0 0 0 0 0 0 0 0 161 C 154 190 190 0 0 41 0 190 0 G 0 0 0 152 190 149 0 0 29 T 36 0 0 38 0 0 190 0 0 i 1.300 2.000 2.000 1.278 2.000 1.248 2.000 2.000 1.384
CAT	11	TCCCCCCCTCA	936	548	1.707		A 0 0 0 0 0 0 0 0 0 0 24 C 7 24 24 24 24 24 24 10 7 24 0 G 0 0 0 0 0 0 0 7 0 0 0 T 17 0 0 0 0 0 0 7 17 0 0 i 1.129 2.000 2.000 2.000 2.000 2.000 2.000 0.437 1.129 2.000 2.000

CCA

BC	K	Seed	Foreground	Background	Ratio	PNG (click for PDF)	Position Weight Matrix
CCA	8	CCCGTCTC	2843	1350	2.105		A 0 0 0 0 0 0 0 0 C 159 159 159 0 0 159 0 159 G 0 0 0 159 0 0 0 0 T 0 0 0 0 159 0 159 0 i 2.000 2.000 2.000 2.000 2.000 2.000 2.000 2.000
CCA	9	CGCCGCGTC	741	378	1.958		A 0 0 0 0 0 27 0 14 23 C 273 0 240 262 0 210 28 0 250 G 0 239 0 11 273 36 225 12 0 T 0 34 33 0 0 0 20 247 0 i 2.000 1.458 1.468 1.756 2.000 0.993 1.157 1.451 1.583
CCA	8	CCGTCTAC	2059	1181	1.743		A 0 0 0 0 0 0 133 0 C 133 133 0 0 133 0 0 133 G 0 0 133 0 0 0 0 0 T 0 0 0 133 0 133 0 0 i 2.000 2.000 2.000 2.000 2.000 2.000 2.000 2.000
CCA	8	GACCCGTC	1847	1095	1.686		A 0 153 0 0 0 0 0 0 C 0 0 153 153 153 0 0 153 G 153 0 0 0 0 153 0 0 T 0 0 0 0 0 0 153 0 i 2.000 2.000 2.000 2.000 2.000 2.000 2.000 2.000
CCA	9	CGTCCCGAC	611	369	1.654		A 37 0 24 0 0 0 0 246 0 C 210 0 31 275 257 248 0 0 251 G 28 275 23 0 18 27 275 29 24 T 0 0 197 0 0 0 0 0 0 i 0.978 2.000 0.694 2.000 1.651 1.537 2.000 1.514 1.573
CCA	8	GCCTCGCC	2180	1346	1.619		A 0 0 0 0 0 0 0 0 C 0 147 147 0 147 0 147 147 G 147 0 0 0 0 147 0 0 T 0 0 0 147 0 0 0 0 i 2.000 2.000 2.000 2.000 2.000 2.000 2.000 2.000
CCA	10	ACTCCTCTCT	1020	643	1.585		A 248 0 10 0 0 24 13 12 12 23 C 23 281 50 247 236 50 248 43 269 43 G 0 0 11 0 12 21 10 0 0 43 T 10 0 210 34 33 186 10 226 0 172 i 1.374 2.000 0.889 1.468 1.231 0.580 1.293 1.139 1.745 0.442
CCA	9	CAGTGTCCG	424	282	1.502		A 0 179 0 30 0 23 0 25 0 C 203 24 0 0 0 24 203 178 34 G 0 0 203 0 203 0 0 0 169 T 0 0 0 173 0 156 0 0 0 i 2.000 1.476 2.000 1.396 2.000 0.988 2.000 1.462 1.348
CCA	11	CCCTTCCTCCC	1132	774	1.462		A 0 0 0 0 0 0 0 0 0 0 0 C 10 10 10 0 0 10 10 0 10 10 10 G 0 0 0 0 0 0 0 0 0 0 0 T 0 0 0 10 10 0 0 10 0 0 0 i 2.000 2.000 2.000 2.000 2.000 2.000 2.000 2.000 2.000 2.000 2.000
CCA	8	ACGTCGAC	1263	969	1.303		A 112 0 0 0 0 0 112 0 C 0 112 0 0 112 0 0 112 G 0 0 112 0 0 112 0 0 T 0 0 0 112 0 0 0 0 i 2.000 2.000 2.000 2.000 2.000 2.000 2.000 2.000

CCC

BC	K	Seed	Foreground	Background	Ratio	PNG (click for PDF)	Position Weight Matrix
CCC	8	CCTGTCTC	2927	1526	1.917		A 0 0 0 0 0 0 0 0 C 190 190 0 0 0 190 0 190 G 0 0 0 190 0 0 0 0 T 0 0 190 0 190 0 190 0 i 2.000 2.000 2.000 2.000 2.000 2.000 2.000 2.000
CCC	11	CCCGCCTCTTC	1009	544	1.853		A 0 0 0 0 0 0 0 0 0 0 0 C 10 10 10 0 10 10 0 10 0 0 10 G 0 0 0 10 0 0 0 0 0 0 0 T 0 0 0 0 0 0 10 0 10 10 0 i 2.000 2.000 2.000 2.000 2.000 2.000 2.000 2.000 2.000 2.000 2.000
CCC	11	CCTCTTCTTTC	1166	639	1.823		A 0 0 0 0 0 0 0 0 0 0 0 C 11 11 0 11 0 0 11 0 0 0 11 G 0 0 0 0 0 0 0 0 0 0 0 T 0 0 11 0 11 11 0 11 11 11 0 i 2.000 2.000 2.000 2.000 2.000 2.000 2.000 2.000 2.000 2.000 2.000
CCC	10	CCCTTTCTTC	1574	881	1.786		A 57 22 76 58 73 56 93 81 32 70 C 877 775 689 78 113 75 767 87 74 874 G 10 64 85 54 107 34 21 31 45 0 T 0 83 94 754 651 779 63 745 793 0 i 1.587 1.068 0.732 0.960 0.622 1.067 1.044 0.948 1.126 1.619
CCC	8	CCGTCTAC	2238	1314	1.703		A 0 0 0 0 0 0 142 0 C 142 142 0 0 142 0 0 142 G 0 0 142 0 0 0 0 0 T 0 0 0 142 0 142 0 0 i 2.000 2.000 2.000 2.000 2.000 2.000 2.000 2.000
CCC	9	CCGGCTGTC	770	459	1.676		A 0 0 0 0 0 0 0 27 0 C 64 64 0 0 64 0 0 0 64 G 0 0 64 64 0 0 64 0 0 T 0 0 0 0 0 64 0 37 0 i 2.000 2.000 2.000 2.000 2.000 2.000 2.000 1.018 2.000
CCC	9	TCCGACGGA	390	304	1.282		A 0 0 0 0 111 0 28 0 135 C 27 135 135 0 24 135 0 0 0 G 21 0 0 135 0 0 107 135 0 T 87 0 0 0 0 0 0 0 0 i 0.710 2.000 2.000 2.000 1.325 2.000 1.264 2.000 2.000
CCC	8	ACGTCGAC	1344	1078	1.247		A 110 0 0 0 0 0 110 0 C 0 110 0 0 110 0 0 110 G 0 0 110 0 0 110 0 0 T 0 0 0 110 0 0 0 0 i 2.000 2.000 2.000 2.000 2.000 2.000 2.000 2.000
CCC	9	GTCAGGACA	206	185	1.113		A 0 0 0 136 0 0 108 0 175 C 0 33 175 39 0 0 32 175 0 G 175 0 0 0 175 175 35 0 0 T 0 142 0 0 0 0 0 0 0 i 2.000 1.302 2.000 1.235 2.000 2.000 0.658 2.000 2.000
CCC	8	CGACGGAC	998	967	1.032		A 0 0 120 0 0 0 120 0 C 120 0 0 120 0 0 0 120 G 0 120 0 0 120 120 0 0 T 0 0 0 0 0 0 0 0 i 2.000 2.000 2.000 2.000 2.000 2.000 2.000 2.000