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WormBase Release WS123



Batch Sequences

Species:

1. Input Options 2. Select one feature to retrieve 3. Output options
Type in a list of sequence or chromosome names:

e.g.   "AC3.8  M7  X  IV  III:1000..4000"


Or upload a file with sequence or chromosome names separated by spaces:
What to output?

feature coordinates only

feature and flanking sequences

flanking sequences only

paste features back for further searches

Note: The last option above allows users to paste results in the field in the Input Options panel for the next round of search.



Flanking sequence lengths:

bp 5' flank, bp 3' flank



Coordinates relative to:

Chromosome

Query sequence



Sequence orientation:

Relative to feature

Always on canonical strand



Output format:

Plain TEXT

HTML

Save to disk (Plain TEXT)



 

Bug fix: March 3, 2004

   Sequences retrieved prior to March 3, 2004 may have been affected by a calculation error. This
    problem, limited to flanking sequences of minus strand features, caused the 5' and 3' flanks to
    be reported in reverse relative to the feature, and in some cases, reported on the plus strand.
    We apologize for any difficulties this may have caused.

    Users relying on output from Batch Sequences for experimental design are encouraged to verify 
    the data first. Please report any problems to wormbase-help@wormbase.org.
   



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