#SMAP Properties #Wed Nov 15 10:46:03 PST 2006 MATCH_SECONDARY_STRUCTURE=false MAX_ATOM_SPHERE_RADIUS=5.0 MIN_PL_ATOM_SPHERE_SIZE=20 LOCAL_SCORE=true MIN_CA_SPHERE_DISTANCE=5.0 MIN_ATOM_SPHERE_DISTANCE=3.0 ASSOCIATE_GRAPH_NODE_FILTER=0.5 MIN_PL_CA_SPHERE_SIZE=5 MAX_CA_SPHERE_RADIUS=7.5 MAX_NUM_PL=5 TIMES_RANDOM_SHUFFLE=0 SCORE_MATRIX=McLACHLAN LIGAND_CONTACT_DISTANCE_CUTOFF=10.0 PRINT_PDB=true SUPER_PDB_OUTPUT_DIR=/Users/danielgarijo/WORK_ISI/smap_v2_0/Output/align_structure_output PRINT_TEMPLATE_LIGAND=false PRINT_QUERY_LIGAND=true PVALUE_CUTOFF=0.0001 TEMPLATE_LIGAND_SITE_ONLY=false #TEMPLATE_LIGAND_ID=NE6,RPT,RFP,RBT,STD QUERY_LIGAND_SITE_ONLY=true #QUERY_LIGAND_ID=