./raxmlHPC-PTHREADS-SSE3 -f d -m GTRGAMMAI -p 3878347 -# 20 -s 18S_cut.phy -n 18S -q partitions.txt -T 10 ./raxmlHPC-PTHREADS-SSE3 -m GTRGAMMAI -p 23423423 -b 12345 -# 1000 -s 18S_cut.phy -n 18S_cut.boot -q partitions.txt -T 10 ./raxmlHPC-PTHREADS-SSE3 -m GTRGAMMAI -f b -t RAxML_bestTree.18S -z RAxML_bootstrap.18S_cut.boot -n 18S_cut.final_tree -T 10