#NEXUS [written Fri Jan 19 12:36:09 EST 2018 by Mesquite version 3.2 (build 801) at USDAMycologys-iMac.local/10.19.68.113] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=20; TAXLABELS 'Cjacksonii_A4' 'Cjacksonii_CBS51089' 'Cjacksonii_LWC10' 'Cjacksonii_MAFF236941' 'Cjacksonii_MB01' 'Cjacksonii_RE18G38' 'Cjacksonii_SE16F4' 'Cjacksonii_SH44' 'Cjacksonii_MAFF235854' 'Cjacksonii_MAFF235856' 'Cmonteithiana_RB19' 'Cmonteithiana_DRR09' 'Cmonteithiana_MAFF236938' 'Cbennettii_CBS30937' 'Cbennettii_CBS46473' 'Cbennettii_CBS31137' 'Chomoeocarpa_CBS31037' 'Chomoeocarpa_IMI167641' 'Chomoeocarpa_PSFFB3' 'Chomoeocarpa_CPB5' ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=633; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX 'Cjacksonii_A4' AAGCCGACCGTTGAAGTTAATGCGTACACTTGCGATCGATGCGGTTGCGAAATCTTCCAACCTGTTGGAT-CCAAAACGTTCGGACCTTTGGTAGAATGCCCGTCGCCAGACTGCAAGGTCAACCAAACCAAGGGACAATTACATCATTCCACTAGGGCATCGAAATTCCAGCCATTCCAGGAAGTCAAGATTCAAGAGATGGCCGAACAAGTACCAGTTGGTCATATTCCGAGAATGTTAACTGTCCTCTGCCATGGAGCGCTTGTTCGTCGTATCAACCCGGGGGATGTCGTTGATGTCGCCGGCATATTCTTGCCTACCCCCTACACTGGTTTCAAGGCGATAAGAGCTGGCCTTCTTACCGACACATATCTGGAAGCACAACATGTCACCCAGCACAAGAAGGCATATGAAGATCTTACCATTGATAGCCGCGTGTTTAGACGGATTGAACAGTACAGAACTTCCGGTCACGTGTATGAGTACCTCGCCAAATCTATCGCTCCTGAGATCTACGGTCATCTCGATGTGAAGAAGGCATTACTCTTGTTATTGGTTGGTGGTGTGACAAAGGAAATGGGAGATGGTATGCGCATCAGAGGTGACATCAACATTTGTCTAATGGGAGACCC 'Cjacksonii_CBS51089' AAGCCGACCGTTGAAGTTAATGCGTACACTTGCGATCGATGCGGTTGCG-AATCTTCCAACCTGTTGGAT-CCAAAACGTTCGGACCTTTGGTAGAATGCCCGTCGCCAGACTGCAAGGTCAACCAAACCAAGGGACAATTACATCATTCCACTAGGGCATCGAAATTCCAGCCATTCCAGGAAGTCAAGATTCAAGAGATGGCCGAACAAGTACCAGTTGGTCATATTCCGAGAATGTTAACTGTCCTCTGCCATGGAGCGCTTGTTCGTCGTATCAACCCGGGGGATGTCGTTGATGTCGCCGGCATATTCTTGCCTACCCCCTACACTGGTTTCAAGGCGATAAGAGCTGGCCTTCTTACCGACACATATCTGGAAGCACAACATGTCACCCAGCACAAGAAGGCATATGAAGATCTTACCATTGATAGCCGCGTGTTTAGACGGATTGAACAGTACAGAACTTCCGGTCACGTGTATGAGTACCTCGCCAAATCTATCGCTCCTGAGATCTACGGTCATCTCGATGTGAAGAAGGCATTACTCTTGTTATTGGTTGGTGGTGTGACAAAGGAAATGGGAGATGGTATGCGCATCAGAGGTGACATCAACATTTGTCTAATGGGAGACCC 'Cjacksonii_LWC10' AAGCCGACCGTTGAAGTTAATGCGTACACTTGCGATCGATGCGGTTGCGAAATCTTCCAACCTGTTGGAT-CCAAAACGTTCGGACCTTTGGTAGAATGCCCGTCGCCAGACTGCAAGGTCAACCAAACCAAGGGACAATTACATCATTCCACTAGGGCATCGAAATTCCAGCCATTCCAGGAAGTCAAGATTCAAGAGATGGCCGAACAAGTACCAGTTGGTCATATTCCGAGAATGTTAACTGTCCTCTGCCATGGAGCGCTTGTTCGTCGTATCAACCCGGGGGATGTCGTTGATGTCGCCGGCATATTCTTGCCTACCCCCTACACTGGTTTCAAGGCGATAAGAGCTGGCCTTCTTACCGACACATATCTGGAAGCACAACATGTCACCCAGCACAAGAAGGCATATGAAGATCTTACCATTGATAGCCGCGTGTTTAGACGGATTGAACAGTACAGAACTTCCGGTCACGTGTATGAGTACCTCGCCAAATCTATCGCTCCTGAGATCTACGGTCATCTCGATGTGAAGAAGGCATTACTCTTGTTATTGGTTGGTGGTGTGACAAAGGAAATGGGAGATGGTATGCGCATCGAAGGTGACATCAACATTTGTCTAATGGGTGA??? 'Cjacksonii_MAFF236941' AAGCCGACCGTTGAAGTTAATGCGTACACTTGCGATCGATGCGGTTGCG-AATCTTCCAACCTGTTGGAT-CCAAAACGTTCGGACCTTTGGTAGAATGCCCGTCGCCAGACTGCAAGGTCAACCAAACCAAGGGACAATTACATCATTCCACTAGGGCATCGAAATTCCAGCCATTCCAGGAAGTCAAGATTCAAGAGATGGCCGAACAAGTACCAGTTGGTCATATTCCGAGAATGTTAACTGTCCTCTGCCATGGAGCGCTTGTTCGTCGTATCAACCCGGGGGATGTCGTTGATGTCGCCGGCATATTCTTGCCTACCCCCTACACTGGTTTCAAGGCGATAAGAGCTGGCCTTCTTACCGACACATATCTGGAAGCACAACATGTCACCCAGCACAAGAAGGCATATGAAGATCTTACCATTGATAGCCGCGTGTTTAGACGGATTGAACAGTACAGAACTTCCGGTCACGTGTATGAGTACCTCGCCAAATCTATCGCTCCTGAGATCTACGGTCATCTCGATGTGAAGAAGGCATTACTCTTGTTATTGGTTGGTGGTGTGACAAAGGAAATGGGAGATGGTATGCGCATCAGAGGTGACATCAACATTTGTCTAATGGGAGACCC 'Cjacksonii_MB01' AAGCCGACCGTTGAAGTTAATGCGTACACTTGCGATCGATGCGGTTGCGAAATCTTCCAACCTGTTGGAT-CCAAAACGTTCGGACCTTTGGTAGAATGCCCGTCGCCAGACTGCAAGGTCAACCAAACCAAGGGACAATTACATCATTCCACTAGGGCATCGAAATTCCAGCCATTCCAGGAAGTCAAGATTCAAGAGATGGCCGAACAAGTACCAGTTGGTCATATTCCGAGAATGTTAACTGTCCTCTGCCATGGAGCGCTTGTTCGTCGTATCAACCCGGGGGATGTCGTTGATGTCGCCGGCATATTCTTGCCTACCCCCTACACTGGTTTCAAGGCGATAAGAGCTGGCCTTCTTACCGACACATATCTGGAAGCACAACATGTCACCCAGCACAAGAAGGCATATGAAGATCTTACCATTGATAGCCGCGTGTTTAGACGGATTGAACAGTATAGAACTTCCGGTCACGTGTATGAGTACCTCGCCAAATCTATCGCTCCTGAGATCTACGGTCATCTCGATGTGAAGAAGGCATTACTCTTGTTATTGGTTGGTGGTGTGACAAAGGAAATGGG??????????????????????????????????????????????????? 'Cjacksonii_RE18G38' ??????????????????????????????????????????GGTTGCGAAATCTTCCAACCTGTTGGAT-CCAAAACGTTCGGACCTTTGGTAGAATGCCCGTCGCCAGACTGCAAGGTCAACCAAACCAAGGGACAATTACATCATTCCACTAGGGCATCGAAATTCCAGCCATTCCAGGAAGTCAAGATTCAAGAGATGGCCGAACAAGTACCAGTTGGTCATATTCCGAGAATGTTAACTGTCCTCTGCCATGGAGCGCTTGTTCGTCGTATCAACCCGGGGGATGTCGTTGATGTCGCCGGCATATTCTTGCCTACCCCCTACACTGGTTTCAAGGCGATAAGAGCTGGCCTTCTTACCGACACATATCTGGAAGCACAACATGTCACCCAGCACAAGAAGGCATATGAAGATCTTACCATTGATAGCCGCGTGTTTAGACGGATTGAACAGTACAGAACTTCCGGTCACGTGTATGAGTACCTCGCCAAATCTATCGCTCCTGAGATCTACGGTCATCTCGATGTGAAGAAGGCATTACTCTTGTTATTGGTTGGTGGTGTGACAAAGGAAATGGGAGATGGTATGCGCATCAGAGGTGACATCAACATTTGTCTAATGGGTGATCC 'Cjacksonii_SE16F4' AAGCCGACCGTTGAAGTTAATGCGTACACTTGCGATCGATGCGGTTGCGAAATCTTCCAACCTGTTGGAT-CCAAAACGTTCGGACCTTTGGTAGAATGCCCGTCGCCAGACTGCAAGGTCAACCAAACCAAGGGACAATTACATCATTCCACTAGGGCATCGAAATTCCAGCCATTCCAGGAAGTCAAGATTCAAGAGATGGCCGAACAAGTACCAGTTGGTCATATTCCGAGAATGTTAACTGTCCTCTGCCATGGAGCGCTTGTTCGTCGTATCAACCCGGGGGATGTCGTTGATGTCGCCGGCATATTCTTGCCTACCCCCTACACTGGTTTCAAGGCGATAAGAGCTGGCCTTCTTACCGACACATATCTGGAAGCACAACATGTCACCCAGCACAAGAAGGCATATGAAGATCTTACCATTGATAGCCGCGTGTTTAGACGGATTGAACAGTACAGAACTTCCGGTCACGTGTATGAGTACCTCGCCAAATCTATCGCTCCTGAGATCTACGGTCATCTCGATGTGAAGAAGGCATTACTCTTGTTATTGGTTGGTGGTGTGACAAAGGAAATGGG??????????????????????????????????????????????????? 'Cjacksonii_SH44' AAGCCGACCGTTGAAGTTAATGCGTACACTTGCGATCGATGCGGTTGCG-AATCTTCCAACCTGTTGGAT-CCAAAACGTTCGGACCTTTGGTAGAATGCCCGTCGCCAGACTGCAAGGTCAACCAAACCAAGGGACAATTACATCATTCCACTAGGGCATCGAAATTCCAGCCATTCCAGGAAGTCAAGATTCAAGAGATGGCCGAACAAGTACCAGTTGGTCATATTCCGAGAATGTTAACTGTCCTCTGCCATGGAGCGCTTGTTCGTCGTATCAACCCGGGGGATGTCGTTGATGTCGCCGGCATATTCTTGCCTACCCCCTACACTGGTTTCAAGGCGATAAGAGCTGGCCTTCTTACCGACACATATCTGGAAGCACAACATGTCACCCAGCACAAGAAGGCATATGAAGATCTTACCATTGATAGCCGCGTGTTTAGACGGATTGAACAGTACAGAACTTCCGGTCACGTGTATGAGTACCTCGCCAAATCTATCGCTCCTGAGATCTACGGTCATCTCGATGTGAAGAAGGCATTACTCTTGTTATTGGTTGGTGGTGTGACAAAGGAAATGGGAGATGGTATGCGCATCAGAGGTGACATCAACATTTGTCTAATGGGAGACCC 'Cjacksonii_MAFF235854' AAGCCGACCGTTGAAGTTAATGCGTACACTTGCGATCGATGCGGTTGCGAAATCTTCCAACCTGTTGGAT-CCAAAACGTTCGGACCTTTGGTAGAATGCCCGTCGCCAGACTGCAAGGTCAACCAAACCAAGGGACAATTACATCATTCCACTAGGGCATCGAAATTCCAGCCATTCCAGGAAGTCAAGATTCAAGAGATGGCCGAACAAGTACCAGTTGGTCATATTCCGAGAATGTTAACTGTCCTCTGCCATGGAGCGCTTGTTCGTCGTATCAACCCGGGGGATGTCGTTGATGTCGCCGGCATATTCTTGCCTACCCCCTACACTGGTTTCAAGGCGATAAGAGCTGGCCTTCTTACCGACACATATCTGGAAGCACAACATGTCACCCAGCACAAGAAGGCATATGAAGATCTTACCATTGATAGCCGCGTGTTTAGACGGATTGAACAGTACAGAACTTCCGGTCACGTGTATGAGTACCTCGCCAAATCTATCGCTCCTGAGATCTACGGTCATCTCGATGTGAAGAAGGCATTACTCTTGTTATTGGTTGGTGGTGTGACAAAGGAAATGGGAGATGGTATGCGCATCAGAGGTGACATCAACATTTGTCTAATGGGAGACCC 'Cjacksonii_MAFF235856' ??????????TTGAAGTTAATGCGTACACTTGCGATCGATGCGGTTGCG-AATCTTCCAACCTGTTGGAT-CCAAAACGTTCGGACCTTTGGTAGAATGCCCGTCGCCAGACTGCAAGGTCAACCAAACCAAGGGACAATTACATCATTCCACTAGGGCATCGAAATTCCAGCCATTCCAGGAAGTCAAGATTCAAGAGATGGCCGAACAAGTACCAGTTGGTCATATTCCGAGAATGTTAACTGTCCTCTGCCATGGAGCGCTTGTTCGTCGTATCAACCCGGGGGATGTCGTTGATGTCGCCGGCATATTCTTGCCTACCCCCTACACTGGTTTCAAGGCGATAAGAGCTGGCCTTCTTACCGACACATATCTGGAAGCACAACATGTCACCCAGCACAAGAAGGCATATGAAGATCTTACCATTGATAGCCGCGTGTTTAGACGGATTGAACAGTACAGAACTTCCGGTCACGTGTATGAGTACCTCGCCAAATCTATCGCTCCTGAGATCTACGGTCATCTCGATGTGAAGAAGGCATTACTCTTGTTATTGGTTGGTGGTGTGACAAAGGAAATGGGAGATGGTATGCGCATCAGAGGTGACATCAACATTTGTCTAATGGG?????? 'Cmonteithiana_RB19' AAGCCGACCGTTGAAGTTAATGCGTACACTTGCGATCGATGCGGTTGTGAAATCTTCCAACCTGTTGGAT-CCAAAACGTTCGGACCTTTGGTAGAATGCCCGTCGCCAGACTGCAAGGTCAACCAAACCAAGGGACAATTACATCATTCCACTAGGGCATCAAAATTCCTGCCATTCCAGGAAGTCAAGATTCAAGAGATGGCCGAACAAGTACCAGTTGGTCATATTCCGAGAATGTTAACTGTTCTCTGCCATGGAGCGCTTGTTCGTCGTATCAACCCGGGGGATGTCGTAGATGTCGCCGGCATATTCTTGCCTACCCCCTACACTGGTTTCAAGGCGATAAGAGCTGGCCTTCTTACCGACACATATCTGGAAGCACAACACGTCACCCAGCATAAGAAGGCATATGAAGATCTTACCATTGATAGCCGCGTGTTTAGACGGATTGAACAGTACAGAACTTCCGGTCACGTGTATGAGTACCTCGCCAAATCTATCGCTCCTGAGATCTACGGTCATCTCGATGTGAAGAAGGCATTACTCTTGTTATTGGTTGGTGGTGTGACAAAGGAAATGGG??????????????????????????????????????????????????? 'Cmonteithiana_DRR09' AAGCCGACCGTTGAAGTTAATGCGTACACTTGCGATCGATGCGGTTGCGAAATCTTCCAACCTGTTGGAT-CCAAAACGTTCGGACCTTTGGTAGAATGCCCGTCGCCAGACTGCAAGGTCAACCAAACCAAGGGACAATTACATCATTCCACTAGGGCATCAAAATTCCTGCCATTCCAGGAAGTCAAGATTCAAGAGATGGCCGAACAAGTACCAGTTGGTCATATTCCGAGAATGTTAACTGTTCTCTGCCATGGAGCGCTTGTTCGTCGTATCAACCCGGGGGATGTCGTAGATGTCGCCGGCATATTCTTGCCTACCCCCTACACTGGTTTCAAGGCGATAAGAGCTGGCCTTCTTACCGACACATATCTGGAAGCACAACACGTCACCCAGCATAAGAAGGCATATGAAGATCTTACCATTGATAGCCGCGTGTTTAGACGGATTGAACAGTACAGAACTTCAGGTCACGTGTATGAGTACCTCGCCAAATCTATCGCTCCTGAGATCTACGGCCATCTCGATGTGAAGAAGGCATTACTCTTGTTATTGGTTGGTGGTGTGACAAAGGAAATGGG??????????????????????????????????????????????????? 'Cmonteithiana_MAFF236938' AAGCCGACCGTTGAAGTTAATGCGTACACTTGCGATCGATGCGGTTGCG-AATCTTCCAACCTGTTGGAT-CCAAAACGTTCGGACCTTTGGTAGAATGCCCGTCGCCAGACTGCAAGGTCAACCAAACCAAGGGACAATTACATCATTCCACTAGGGCATCAAAATTCCTGCCATTCCAGGAAGTCAAGATTCAAGAGATGGCCGAACAAGTACCAGTTGGTCATATTCCGAGAATGTTAACTGTTCTCTGCCATGGAGCGCTTGTTCGTCGTATCAACCCGGGGGATGTCGTAGATGTCGCCGGCATATTCTTGCCTACCCCCTACACTGGTTTCAAGGCGATAAGAGCTGGCCTTCTTACCGACACATATCTGGAAGCACAACACGTCACCCAGCATAAGAAGGCATATGAAGATCTTACCATTGATAGCCGCGTGTTTAGACGGATTGAACAGTACAGAACTTCAGGTCACGTGTATGAGTACCTCGCCAAATCTATCGCTCCTGAGATCTACGGCCATCTCGATGTGAAGAAGGCATTACTCTTGTTATTGGTTGGTGGTGTGACAAAGGAAATGGGAGATGGTATGCGCATCAGAGGTGACATCAACATTTGTCTTATGGGAGA??? 'Cbennettii_CBS30937' AAGCCGACTGTAGAAGTTAACGCGTACACTTGCGATCGATGCGGTTGCGAAATTTTCCAACCTGTTGGAT-CCAAAACGTTCGGGCCTTTAGTAGAATGCCCGTCGCCAGACTGCAAGGTCAACCAAACCAAGGGCCAACTGCATCATTCTACTAGAGCATCGAAATTCCAGCCATTCCAGGAAGCCAAGATTCAAGAGATGGCCGAACAAGTACCAGTTGGTCATATTCCAAGAATGTTGACCATTCTATGCCATGGAGCGCTTGTTCGTCGCATCAACCCAGGAGATGTTGTTGACGTCGCCGGAATATTCTTGCCTACCCCCTACACTGGTTTCAAGGCGATAAGAGCTGGTCTCCTTACCGACACATATTTAGAAGCGCAACATGTCACCCAGCACAAGAAGGCATATGAAGACCTTACGATCGACAGCCGCGTGTTTAGACGAATTGAACAATACAGAGCTTCTGGTCATGTGTATGAGTACCTCGCTAAATCTATCGCTCCTGAAATCTACGGTCATCTCGATGTGAAGAAGGCACTACTATTGCTGTTGGTTGGTGGTGTGACAAAAGAAATGGGAGATGGTATGCGCATCAGAGGTGACATCAACATCTGTCTTATGGGTGATCC 'Cbennettii_CBS46473' AAGCCGACTGTAGAAGTTAACGCGTACACTTGCGATCGATGTGGTTGCGAAATTTTCCAACCTGTTGGAT-CCAAAACGTTCGGGCCTTTGGTAGAATGCCCGTCGCCAGACTGCAAGGTCAACCAAACCAAGGGACAACTGCATCATTCTACTAGAGCATCGAAATTCCAGCCATTCCAGGAAGTCAAGATTCAAGAGATGGCCGAACAAGTACCAGTTGGTCATATTCCAAGAATGTTGACCATTCTATGCCATGGAGCGCTTGTTCGTCGCATCAACCCAGGAGATGTTGTTGACGTCGCCGGAATATTCTTGCCTACCCCTTACACTGGTTTCAAGGCGATAAGAGCTGGTCTCCTTACCGACACATATTTAGAAGCGCAACATGTCACCCAGCACAAGAAGGCATATGAAGACCTTACGATCGACAGCCGCGTGTTTAGACGAATTGAACAATACAGAGCTTCTGGTCATGTGTATGAGTACCTCGCTAAATCTATCGCTCCTGAAATCTACGGTCATCTCGATGTGAAGAAGGCACTACTATTGCTGTTGGTTGGTGGTGTGACGAAAGAAATGGGAGATGGTATGCGCATCAGAGGCGACATCAACATCTGTCTTATGGGAGACCC 'Cbennettii_CBS31137' AAGCCGACTGTTGAAGTTAACGCATACACTTGCGATCGATGCGGTTGCG-AATTTTCCAACCTGTTGGAT-CCAAAACTTTCGGGCCCTTGGTTGAATGTCCGTCGCCCGACTGCAAGGTCAACCAAACCAAGGGACAACTGCATCATTCTACTAGAGCATCAAAATTCCAGCCATTCCAGGAAGTTAAGATTCAAGAGATGGCCGAACAAGTACCGGTCGGTCACATTCCCAGAATGTTGACGATTCTATGTCATGGAGCACTTGTTCGTCGTATCAATCCGGGGGATGTCGTTGATGTCGCTGGAATATTCTTGCCTACCCCCTACACTGGCTTCAAGGCGATAAGAGCTGGTCTTCTTACCGACACATATCTGGAAGCACAACATGTCACCCAACACAAGAAGGCATACGAAGATCTTACCATTGACAGCCGCGTGTTCAGACGGATTGAACAATACAGAGCTTCCGGTCATGTGTATGAGTACCTCGCTAAATCTATCGCCCCTGAAATCTACGGTCATCTCGATGTGAAAAAGGCACTACTATTGCTGTTGGTTGGTGGTGTAACAAAGGAAATGGGAGATGGTATGCGCATCAGAGGTGATATCAACATTTGTCTTATGGGAGACCC 'Chomoeocarpa_CBS31037' AAGCCGACTGTTGAAGTTAACGCATACACTTGCGATCGATGCGGTTGCG-AATTTTCCAGCCTGTTGGGT-CCAAAACTTTCGGGCCCTTGGTTGAATGTCCGTCGCCCGACTGCAAGGTCAACCAAACCAAGGGACAACTGCATCATTCTACTAGAGCATCAAAATTCCAGCCATTCCAGGAAGTTAAGATTCAAGAGATGGCCGAACAAGTACCAGTCGGTCATATTCCAAGAATGTTGACGATTCTATGCCATGGAGCACTTGTTCGTCGTATCAACCCGGGAGATGTCGTTGATGTCGCTGGAATATTCTTGCCTACCCCCTACACTGGCTTCAAGGCGATAAGAGCTGGTCTTCTTACTGACACATATCTGGAAGCACAACATGTCACCCAACACAAGAAGGCATACGAAGATCTTACCATTGACAGCCGCGTATTCAGACGGATTGAACAATACAGAGCTTCCGGTCATGTGTATGAGTACCTCGCTAAATCTATCGCCCCTGAAATCTACGGTCATCTCGATGTGAAGAAGGCACTACTATTGCTGTTGGTTGGTGGTGTGACAAAGGAAATGGGAGATGGTATGCGCATCAGAGGTGATATCAACATTTGTCTTATGGGAGACCC 'Chomoeocarpa_IMI167641' AAGCCGACTGTTGAAGTTAACGCATACACTTGCGATCGATGCGGTTGCGAAATTTTCCAGCCTGTTGGGT-CCAAAACTTTCGGGCCCTTGGTTGAATGTCCGTCGCCCGACTGCAAGGTCAACCAAACCAAGGGACAACTGCATCATTCTACTAGAGCATCAAAATTCCAGCCATTCCAGGAAGTTAAGATTCAAGAGATGGCCGAACAAGTACCAGTCGGTCATATTCCAAGAATGTTGACGATTCTATGCCATGGAGCACTTGTTCGTCGTATCAACCCGGGAGATGTCGTTGATGTCGCTGGAATATTCTTGCCTACCCCCTACACTGGCTTCAAGGCGATAAGAGCTGGTCTTCTTACTGACACATATCTGGAAGCACAACATGTCACCCAACACAAGAAGGCATACGAAGATCTTACCATTGACAGCCGCGTATTCAGACGGATTGAACAATACAGAGCTTCCGGTCATGTGTATGAGTACCTCGCTAAATCTATCGCCCCTGAAATCTACGGTCATCTCGATGTGAAGAAGGCACTACTATTGCTGTTGGTTGGTGGTGTGACAAAGGAAATGGGAGATGGTATGCGCATCAGAGGTGATATCAACATTTGTCTTATGGGTGATCC 'Chomoeocarpa_PSFFB3' ??????????????????????????????????????????????????TTTTTCCCAGCCTGTTGGGTCCCAAAACTTTCGGGCCCTTGGTTGAATGTCCGTCGCCCGACTGCAAGGTCAACCAAACCAAGGGACAACTGCATCATTCTACTAGAGCATCAAAATTCCAGCCATTCCAGGAAGTTAAGATTCAAGAGATGGCCGAACAAGTACCAGTCGGTCATATTCCAAGAATGTTGACGATTCTATGCCATGGAGCACTTGTTCGTCGTATCAACCCGGGAGATGTCGTTGATGTCGCTGGAATATTCTTGCCTACCCCCTACACTGGCTTCAAGGCGATAAGAGCTGGTCTTCTTACTGACACATATCTGGAAGCACAACATGTCACCCAACACAAGAAGGCATACGAAGATCTTACCATTGACAGCCGCGTATTCAGACGGATTGAACAATACAGAGCTTCCGGTCATGTGTATGAGTACCTCGCTAAATCTATCGCCCCTGAAATCTACGGTCATCTCGATGTGAAGAAGGCACTACTATTGCTGTTGGTTGGTGGTGTGACAAAGGAAATGGGAGATGGTATGCGCATCAGAGGTGATATCAACATTTGTCTTATGGGTGATCC 'Chomoeocarpa_CPB5' ?????????GTTGAAGTTAACGCATACACTTGCGATCGATGCGGTTGCG-AATTTTCCAGCCTGTTGGGT-CCAAAACTTTCGGGCCCTTGGTTGAATGTCCGTCGCCCGACTGCAAGGTCAACCAAACCAAGGGACAACTGCATCATTCTACTAGAGCATCAAAATTCCAGCCATTCCAGGAAGTTAAGATTCAAGAGATGGCCGAACAAGTACCAGTCGGTCATATTCCAAGAATGTTGACGATTCTATGCCATGGAGCACTTGTTCGTCGTATCAACCCGGGAGATGTCGTTGATGTCGCTGGAATATTCTTGCCTACCCCCTACACTGGCTTCAAGGCGATAAGAGCTGGTCTTCTTACTGACACATATCTGGAAGCACAACATGTCACCCAACACAAGAAGGCATACGAAGATCTTACCATTGACAGCCGCGTATTCAGACGGATTGAACAATACAGAGCTTCCGGTCATGTGTATGAGTACCTCGCTAAATCTATCGCCCCTGAAATCTACGGTCATCTCGATGTGAAGAAGGCACTACTATTGCTGTTGGTTGGTGGTGTGACAAAGGAAATGGGAGATGGTATGCGCATCAGAGGTGATATCAACATTTGTCTTATGGGTGATCC ; END; BEGIN LABELS; TAXAGROUPLABEL CJ COLOR = (RGB 0.03529412 1 0.03529412) ; TAXAGROUPLABEL CM COLOR = (RGB 0.26666667 0.85490196 1) ; TAXAGROUPLABEL CB COLOR = (RGB 1 0.16862745 0.16862745) ; TAXAGROUPLABEL CH COLOR = (RGB 1 1 0.26666667) ; END; BEGIN SETS; TAXPARTITION * UNTITLED = CJ : 1 - 10, CM : 11 - 13, CB : 14 - 16, CH : 17 - 20; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 633; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 633; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 633; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1516383369574; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 1020358697217876699; tell It; setDefaultOrder 0 8 18 23 24 29 30 31 19 20 27 13 22 3 6 5 4 15 26 11; attachments ; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 2851470143333997895; mqVersion 320; checksumv 0 3 940864445 null getNumChars 633 numChars 633 getNumTaxa 20 numTaxa 20 short true bits 15 states 15 sumSquaresStatesOnly 259353.0 sumSquares 259353.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 290; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1205 1272; setLocation 8 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #1020358697217876699 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #1020358697217876699; getWindow; tell It; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 915 1200; setLocation 8 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.arrow; endTell; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #2851470143333997895 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 915 1200; setLocation 8 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; endTell; setActive; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;