T G C T T T C G T A C C T G A Majority ------------------+----------- 700 ------------------+----------- 1 - - - - - - T G G G G C A G G JS-01.seq 685 T G A C T T C G A A C G T G A AF330703.1 ARV-S1133 SPAIN 2000.seq 1 - - - - - - - - - - - - - - - AJ310525.1 MDRV strain 89026 France 200 107 T G A C T T C G A A C G T G A HE985301.1 ARV Austrilia 2012.seq 608 T C C T C C C C T A C C A G T JX145334.1 GRV strain 03G China 2012.se 38 T C C T C C C C T A C C A G T JX826587.1 DRV strain TH11 China 2015.s 38 T C C T C C C C T A C C A G T KF729971.1 GRV strain YY10G cell China 161 G T C G G T C T T A G C T G A KF809668.1 D20 99 Hungary 2013.seq 608 T C C T C C C C T A C C A G T KJ879930.1 DRV strain SD-12 China 2014. 686 T G A C T T C G A G C G T G A L07069.1 ARV 1994.seq 677 T G A C T T C G A A C G T G A L39002.1 ARV 1995.seq C T A G C G A C G T C G A T C Majority --------+-------------------+- 710 720 --------+-------------------+- 10 T C A G C G A C G T C G A T C JS-01.seq 700 A T A T A A G T C A T G G C G AF330703.1 ARV-S1133 SPAIN 2000.seq 1 - - - - - - - - - - - - - - - AJ310525.1 MDRV strain 89026 France 200 122 C T A C A A A T C C T G G C G HE985301.1 ARV Austrilia 2012.seq 623 C A A G C G A C G T C G A T C JX145334.1 GRV strain 03G China 2012.se 53 C A A G C G A C G T C G A T C JX826587.1 DRV strain TH11 China 2015.s 53 C A A G C G A C G T C G A T C KF729971.1 GRV strain YY10G cell China 176 G T T G T C T G A T C T C T T KF809668.1 D20 99 Hungary 2013.seq 623 C A A G C G A C G T C G A T C KJ879930.1 DRV strain SD-12 China 2014. 701 C T A T A A A T C C T G G C G L07069.1 ARV 1994.seq 692 A T A T A A G T C A T G G C G L39002.1 ARV 1995.seq A T T T G A C G A C A C T G A Majority ------------------+----------- 730 ------------------+----------- 25 A T T T G A C G A C A C A G A JS-01.seq 715 A T T T G A C G C C G A T C T AF330703.1 ARV-S1133 SPAIN 2000.seq 1 - - - - - - - - - - - - - - - AJ310525.1 MDRV strain 89026 France 200 137 A T T T G A A G T C A A T T C HE985301.1 ARV Austrilia 2012.seq 638 A T T T G A A G A C A C A G A JX145334.1 GRV strain 03G China 2012.se 68 A T T T G A C G A C A C A G A JX826587.1 DRV strain TH11 China 2015.s 68 A T T T G A C G A C A C A G A KF729971.1 GRV strain YY10G cell China 191 T G A T T T G G C C A T T T T KF809668.1 D20 99 Hungary 2013.seq 638 A T T T G A C G A C A C A G A KJ879930.1 DRV strain SD-12 China 2014. 716 A T T T G A C T C A A A T C C L07069.1 ARV 1994.seq 707 A T T T G A C G C C G A T C T L39002.1 ARV 1995.seq T C G A A T G C C T C C A A A Majority --------+-------------------+- 740 750 --------+-------------------+- 40 T C A A A T C C C T C C A A A JS-01.seq 730 A T G A A C G G C T - - - G A AF330703.1 ARV-S1133 SPAIN 2000.seq 1 - - - - - - - - - - - - - - - AJ310525.1 MDRV strain 89026 France 200 152 A T G A G C G A T T - - - G A HE985301.1 ARV Austrilia 2012.seq 653 T C A A A T C C C T C C A A A JX145334.1 GRV strain 03G China 2012.se 83 T C A A A T C C C T C C A A A JX826587.1 DRV strain TH11 China 2015.s 83 T C A A A T C C C T C C A A A KF729971.1 GRV strain YY10G cell China 206 T C G T G A G T T G C G C G T KF809668.1 D20 99 Hungary 2013.seq 653 T C A A A T C C C T C C A A A KJ879930.1 DRV strain SD-12 China 2014. 731 G T G A G C G T C T - - - C T L07069.1 ARV 1994.seq 722 A T G A A C G G C T - - - G A L39002.1 ARV 1995.seq G C G C T G T C G A C T C A C Majority ------------------+----------- 760 ------------------+----------- 55 G C G C C G T C G A C T C A C JS-01.seq 742 C C A A T C T A G A A G C G T AF330703.1 ARV-S1133 SPAIN 2000.seq 1 - - - - - - - - - - - - - - - AJ310525.1 MDRV strain 89026 France 200 164 C T A G T T T G G A A G C G T HE985301.1 ARV Austrilia 2012.seq 668 G T G C C G T C G A C T C A C JX145334.1 GRV strain 03G China 2012.se 98 G C G C C G T C G A C T C A C JX826587.1 DRV strain TH11 China 2015.s 98 G C G C C G T C G A C T C A C KF729971.1 GRV strain YY10G cell China 221 G C C G T T T G A C T T A G T KF809668.1 D20 99 Hungary 2013.seq 668 G C G C C G T C G A C T C A C KJ879930.1 DRV strain SD-12 China 2014. 743 C T G C T C T A G A A T C T G L07069.1 ARV 1994.seq 734 C C A A T C T A G A A G C G T L39002.1 ARV 1995.seq T C A A A G A A T C A C T A G Majority --------+-------------------+- 770 780 --------+-------------------+- 70 T C A A A G A A T C A C A A G JS-01.seq 757 C T A C G G A G T T A T T A C AF330703.1 ARV-S1133 SPAIN 2000.seq 1 - - - - - - - - - - - - - - - AJ310525.1 MDRV strain 89026 France 200 179 C G A C A G A G T C A T T G C HE985301.1 ARV Austrilia 2012.seq 683 T C A A A G A A T C A C A A G JX145334.1 GRV strain 03G China 2012.se 113 T C A A A G A A T C A C A A G JX826587.1 DRV strain TH11 China 2015.s 113 T C A A A G A A T C A C A G G KF729971.1 GRV strain YY10G cell China 236 G C T C G T G C C T G C T T G KF809668.1 D20 99 Hungary 2013.seq 683 T C A A A G A A T C A C A A G KJ879930.1 DRV strain SD-12 China 2014. 758 C G A A T G C A T C G T T G A L07069.1 ARV 1994.seq 749 C T A C G G A G T T A T T A C L39002.1 ARV 1995.seq T G G T G G T G T T G A G A C Majority ------------------+----------- 790 ------------------+----------- 85 T G G T G G T G T T G A G A C JS-01.seq 772 A T C G C T C C A T T T C C G AF330703.1 ARV-S1133 SPAIN 2000.seq 1 - - - - - - - - - - - - - - - AJ310525.1 MDRV strain 89026 France 200 194 A T C A A T C C G T C T C T G HE985301.1 ARV Austrilia 2012.seq 698 T G G T G G T G T T G A G A C JX145334.1 GRV strain 03G China 2012.se 128 T G G T G G T G T T G A G A C JX826587.1 DRV strain TH11 China 2015.s 128 T G G T G G T G T T G A G A C KF729971.1 GRV strain YY10G cell China 251 T G G C G C C T G G A A C G A KF809668.1 D20 99 Hungary 2013.seq 698 T G G T G G T G T T G A G A C KJ879930.1 DRV strain SD-12 China 2014. 773 G C G A G T C C G T T A A C A L07069.1 ARV 1994.seq 764 A T C G C T C C A T T T C C G L39002.1 ARV 1995.seq G C C T G A C T A C G A T T A Majority --------+-------------------+- 800 810 --------+-------------------+- 100 G C C T G A C T A C G A T T A JS-01.seq 787 A T A T A T C C A C T A C T G AF330703.1 ARV-S1133 SPAIN 2000.seq 1 - - - - - - - - - - - - - - A AJ310525.1 MDRV strain 89026 France 200 209 G C A T G T C C G C T A C T T HE985301.1 ARV Austrilia 2012.seq 713 G C C T G A C T A C G A T T A JX145334.1 GRV strain 03G China 2012.se 143 G C C T G A C T A C G A T T A JX826587.1 DRV strain TH11 China 2015.s 143 G C C T G A C T A C G A T T A KF729971.1 GRV strain YY10G cell China 266 A T A C C A C C T T C A C C A KF809668.1 D20 99 Hungary 2013.seq 713 G C C T G A C T A C G A T T A KJ879930.1 DRV strain SD-12 China 2014. 788 C G G C T T T G T C T A G A T L07069.1 ARV 1994.seq 779 A T A T A T C C A C T T C T G L39002.1 ARV 1995.seq T G T C - - - G A C G G T G G Majority ------------------+----------- 820 ------------------+----------- 115 C G T C - - - G A C G G T G G JS-01.seq 802 T C T C A A A T A T T T C T G AF330703.1 ARV-S1133 SPAIN 2000.seq 2 T G T C C G G A A C T C C C G AJ310525.1 MDRV strain 89026 France 200 224 T A T C G G A T C T T T C T G HE985301.1 ARV Austrilia 2012.seq 728 C G T C - - - G A C G G T G G JX145334.1 GRV strain 03G China 2012.se 158 C G T C - - - G A C G G T G G JX826587.1 DRV strain TH11 China 2015.s 158 C G T C - - - G A C G G T G G KF729971.1 GRV strain YY10G cell China 281 T G T C C G G A A C T C T C G KF809668.1 D20 99 Hungary 2013.seq 728 C G T C - - - G A C G G T G G KJ879930.1 DRV strain SD-12 China 2014. 803 T G A C G G A T T T G T C T G L07069.1 ARV 1994.seq 794 T C T C A A A T A T T T C T G L39002.1 ARV 1995.seq C A G A T C T A C A A T C A A Majority --------+-------------------+- 830 840 --------+-------------------+- 127 C A G A T C T A C A A T C A A JS-01.seq 817 C A A A T T T A C A A G A C A AF330703.1 ARV-S1133 SPAIN 2000.seq 17 C T C C T C C A G G A T A C A AJ310525.1 MDRV strain 89026 France 200 239 C T G A T T T G C A A G A T A HE985301.1 ARV Austrilia 2012.seq 740 C A G A T C T A C A A T C A A JX145334.1 GRV strain 03G China 2012.se 170 C A G A T C T A C A A T C A A JX826587.1 DRV strain TH11 China 2015.s 170 C A G A T C T A C A A T C A A KF729971.1 GRV strain YY10G cell China 296 C T C C T C C A G G A T G C A KF809668.1 D20 99 Hungary 2013.seq 740 C A G A T C T A C A A T C A A KJ879930.1 DRV strain SD-12 China 2014. 818 C G G C G C T T G G C A A T A L07069.1 ARV 1994.seq 809 C A A A T T T A C A A G A C A L39002.1 ARV 1995.seq C A A C T G A A T T G T T G A Majority ------------------+----------- 850 ------------------+----------- 142 C A A C T G A A T T G T T G A JS-01.seq 832 T G A C C C A T A C A T T G G AF330703.1 ARV-S1133 SPAIN 2000.seq 32 G T G T T C C A T C C T G C T AJ310525.1 MDRV strain 89026 France 200 254 C A A C G C G C G C C C T A G HE985301.1 ARV Austrilia 2012.seq 755 C A A C T G A A T T G T T G A JX145334.1 GRV strain 03G China 2012.se 185 C A A C T G A A T T G T T G A JX826587.1 DRV strain TH11 China 2015.s 185 C A A C T G A A T T G T T G A KF729971.1 GRV strain YY10G cell China 311 G T G T T C C A T T C T G C T KF809668.1 D20 99 Hungary 2013.seq 755 C A A C T G A A T T G T T G A KJ879930.1 DRV strain SD-12 China 2014. 833 T G G C G A C G T C G G T A G L07069.1 ARV 1994.seq 824 T G A C C C A T A C A T T G G L39002.1 ARV 1995.seq C C T C A G A G G T T G C A G Majority --------+-------------------+- 860 870 --------+-------------------+- 157 C C T C A C A G G T G G C A G JS-01.seq 847 A T G A T G T A A C T G C T A AF330703.1 ARV-S1133 SPAIN 2000.seq 47 C C C C G G G C T C T C G A G AJ310525.1 MDRV strain 89026 France 200 269 A T G A C G T A A C T G T A A HE985301.1 ARV Austrilia 2012.seq 770 C C T C A C A G G T G G C A G JX145334.1 GRV strain 03G China 2012.se 200 C C T C A C A G G T G G C A G JX826587.1 DRV strain TH11 China 2015.s 200 C C T C A C A G G T G G C A G KF729971.1 GRV strain YY10G cell China 326 C C C C G G G C T C T C G C G KF809668.1 D20 99 Hungary 2013.seq 770 C C T C A C A G G T G G C A G KJ879930.1 DRV strain SD-12 China 2014. 848 C A G A G A T G A A A G T A G L07069.1 ARV 1994.seq 839 A T G A T G T A A C T G C T A L39002.1 ARV 1995.seq G A C T - - - - - - - - - T A Majority ------------------+----------- 880 ------------------+----------- 172 G A C T - - - - - - - - - T A JS-01.seq 862 A T T T A G A C G G T T T G A AF330703.1 ARV-S1133 SPAIN 2000.seq 62 G T C T A A - - - - - - C T A AJ310525.1 MDRV strain 89026 France 200 284 C T T T G A A T A G C C T A A HE985301.1 ARV Austrilia 2012.seq 785 G A C T - - - - - - - - - T A JX145334.1 GRV strain 03G China 2012.se 215 G A C T - - - - - - - - - T A JX826587.1 DRV strain TH11 China 2015.s 215 G A C T - - - - - - - - - T A KF729971.1 GRV strain YY10G cell China 341 G T C T A A - - - - - - C T A KF809668.1 D20 99 Hungary 2013.seq 785 G A C T - - - - - - - - - T A KJ879930.1 DRV strain SD-12 China 2014. 863 A A T T G A A T T C G T T A A L07069.1 ARV 1994.seq 854 A T T T A G A C G G T T T G A L39002.1 ARV 1995.seq G T T C C C G T G T G G C T G Majority --------+-------------------+- 890 900 --------+-------------------+- 178 G T T C C C G T G T G G C T T JS-01.seq 877 G G A C C A C T G T T A C T G AF330703.1 ARV-S1133 SPAIN 2000.seq 71 G A T C T G A T G T C T T A G AJ310525.1 MDRV strain 89026 France 200 299 G C G C T A C C A T T G C T G HE985301.1 ARV Austrilia 2012.seq 791 G T T C C C G T G T G G C T T JX145334.1 GRV strain 03G China 2012.se 221 G T T C C C G T G T G G C T T JX826587.1 DRV strain TH11 China 2015.s 221 G T T C C C G T G T G G C T T KF729971.1 GRV strain YY10G cell China 350 G A T C T G A T G T C T T A G KF809668.1 D20 99 Hungary 2013.seq 791 G T T C C C G T G T G G C T T KJ879930.1 DRV strain SD-12 China 2014. 878 T T T C T G A T G T T C A G G L07069.1 ARV 1994.seq 869 G G A C C A C T G T T A C T G L39002.1 ARV 1995.seq C A G T G A C T G A T T C G G Majority ------------------+----------- 910 ------------------+----------- 193 C A G T G A C T G A T G A G G JS-01.seq 892 C A C T T C A G G A T T C C G AF330703.1 ARV-S1133 SPAIN 2000.seq 86 C A T T G A T T C T T T C G T AJ310525.1 MDRV strain 89026 France 200 314 C G C T C C A G A C T T C C T HE985301.1 ARV Austrilia 2012.seq 806 C A G T G A C T G A T G A G G JX145334.1 GRV strain 03G China 2012.se 236 C A G T G A C T G A T G A G G JX826587.1 DRV strain TH11 China 2015.s 236 C A G T G A C T G A T G A G G KF729971.1 GRV strain YY10G cell China 365 C A T T G A T T C T T T C G T KF809668.1 D20 99 Hungary 2013.seq 806 C A G T G A C T G A T G A G G KJ879930.1 DRV strain SD-12 China 2014. 893 C C T T A C G C A C T T C C T L07069.1 ARV 1994.seq 884 C A C T T C A G G A T T C C G L39002.1 ARV 1995.seq T - - A G T C C G T G T C G - Majority --------+-------------------+- 920 930 --------+-------------------+- 208 T - - A G T C C G T G T A G - JS-01.seq 907 T C T C C A T T C T G T C T - AF330703.1 ARV-S1133 SPAIN 2000.seq 101 T C A A T C C C G T G T C C C AJ310525.1 MDRV strain 89026 France 200 329 T G A C G A C T C T G T C G - HE985301.1 ARV Austrilia 2012.seq 821 T - - A G T C C G T G T A G - JX145334.1 GRV strain 03G China 2012.se 251 T - - A G T C C G T G T A A - JX826587.1 DRV strain TH11 China 2015.s 251 T - - A G T C C G T G T T G - KF729971.1 GRV strain YY10G cell China 380 T C A A T C C C G T G T C C C KF809668.1 D20 99 Hungary 2013.seq 821 T - - A G T C C G T G T A A - KJ879930.1 DRV strain SD-12 China 2014. 908 T G G A T T C T T C C T C T - L07069.1 ARV 1994.seq 899 T C T C C A T T C T G C C T - L39002.1 ARV 1995.seq A T T C A G T T G T T G G A T Majority ------------------+----------- 940 ------------------+----------- 220 A T T C A G T T A T T G G A T JS-01.seq 921 - - A C A A A T G T G A C T G AF330703.1 ARV-S1133 SPAIN 2000.seq 116 G G T C C G A T G T C G A G G AJ310525.1 MDRV strain 89026 France 200 343 - - G C A A C G G T G G A T G HE985301.1 ARV Austrilia 2012.seq 833 A T T C A G T G A T T G G A T JX145334.1 GRV strain 03G China 2012.se 263 A T T C A G T G A T T G G A T JX826587.1 DRV strain TH11 China 2015.s 263 A T T C A G T T A T T G G A T KF729971.1 GRV strain YY10G cell China 395 G G T C T G A T G T C G A G G KF809668.1 D20 99 Hungary 2013.seq 833 A T T C A G T G A T T G G A T KJ879930.1 DRV strain SD-12 China 2014. 922 - - T C G G A A C T G G C G T L07069.1 ARV 1994.seq 913 - - A C A A A T G T G A C T G L39002.1 ARV 1995.seq C T T T G A C C A C T A A T C Majority --------+-------------------+- 950 960 --------+-------------------+- 235 C T A C G A T C A C T A A T C JS-01.seq 934 A C T T A A C G A A C A G A T AF330703.1 ARV-S1133 SPAIN 2000.seq 131 A C T T G T C C C G T C G T C AJ310525.1 MDRV strain 89026 France 200 356 A A C T A A C G A A C A C T T HE985301.1 ARV Austrilia 2012.seq 848 C T A C G A T C A C T A A T C JX145334.1 GRV strain 03G China 2012.se 278 C T A C G A T C A C T A A T C JX826587.1 DRV strain TH11 China 2015.s 278 C T A C G A T C A C A A A T C KF729971.1 GRV strain YY10G cell China 410 A T T T G T C C C G T C G T C KF809668.1 D20 99 Hungary 2013.seq 848 C T A C G A T C A C T A A T C KJ879930.1 DRV strain SD-12 China 2014. 935 C T T T A T C C T T A T T G G L07069.1 ARV 1994.seq 926 A C T T A A C G A A C A G A T L39002.1 ARV 1995.seq T T T A C A A T G T C C G G T Majority ------------------+----------- 970 ------------------+----------- 250 T T G A C A A T G T C C G G T JS-01.seq 949 C C T C T G C G C A C G C G G AF330703.1 ARV-S1133 SPAIN 2000.seq 146 T C T C C T C A T T G C A G T AJ310525.1 MDRV strain 89026 France 200 371 C C T C C G C T C A C T C A G HE985301.1 ARV Austrilia 2012.seq 863 T T G A C A A T G T C C G G T JX145334.1 GRV strain 03G China 2012.se 293 T T G A C A A C G T C C G G T JX826587.1 DRV strain TH11 China 2015.s 293 T T G A C A A T G T C C G G T KF729971.1 GRV strain YY10G cell China 425 T C T C C T T A T T G C A G T KF809668.1 D20 99 Hungary 2013.seq 863 T T G A C A A T G T C C G G T KJ879930.1 DRV strain SD-12 China 2014. 950 T G C A T G A T C A T G A T T L07069.1 ARV 1994.seq 941 C C T C T G C G C A C G C G G L39002.1 ARV 1995.seq C C G A G C T A T C T T C T C Majority --------+-------------------+- 980 990 --------+-------------------+- 265 C C G A G C T A T C C T C T C JS-01.seq 964 C G A T A C T A T C T T C A C AF330703.1 ARV-S1133 SPAIN 2000.seq 161 C C T C G T A T G A T G C T C AJ310525.1 MDRV strain 89026 France 200 386 G A A T G C T G T C A T C T T HE985301.1 ARV Austrilia 2012.seq 878 C C G A G C C A T C C T C T C JX145334.1 GRV strain 03G China 2012.se 308 C C G A A C T A T C C T C T C JX826587.1 DRV strain TH11 China 2015.s 308 C C G A G C T A T C C T C T C KF729971.1 GRV strain YY10G cell China 440 C C T C G T A T G A T G C C C KF809668.1 D20 99 Hungary 2013.seq 878 C C G A G C T A T C C T C T C KJ879930.1 DRV strain SD-12 China 2014. 965 C T T C G A T T T C T G A T C L07069.1 ARV 1994.seq 956 C G A T A C T A T C T T C A C L39002.1 ARV 1995.seq T C T C C T C C C A A G T T T Majority ------------------+----------- 1000 ------------------+----------- 280 T C T C C T C C C A A G T C T JS-01.seq 979 T T C A G A C T A C G G T T G AF330703.1 ARV-S1133 SPAIN 2000.seq 176 T C T T C G A A G A G G T G - AJ310525.1 MDRV strain 89026 France 200 401 T G C A A A C T G C C G T T A HE985301.1 ARV Austrilia 2012.seq 893 T C T C C T C C C A A G T C T JX145334.1 GRV strain 03G China 2012.se 323 T C T C C T C C C A A G T C T JX826587.1 DRV strain TH11 China 2015.s 323 T C T C C T C C C A A G T T T KF729971.1 GRV strain YY10G cell China 455 T C T T C G G G G A G G T A - KF809668.1 D20 99 Hungary 2013.seq 893 T C T C C T C C C A A G T T T KJ879930.1 DRV strain SD-12 China 2014. 980 T A C A A A A G G A A A G T C L07069.1 ARV 1994.seq 971 T T C A A A C T A C G G T T G L39002.1 ARV 1995.seq C G T C G C A G A C G T C C A Majority --------+-------------------+- 1010 1020 --------+-------------------+- 295 C G T C G C A G A C G T C C A JS-01.seq 994 A C G G A A A C T C C A C T G AF330703.1 ARV-S1133 SPAIN 2000.seq 190 C T T C G C T T G C G T G T A AJ310525.1 MDRV strain 89026 France 200 416 A T G G A A A C T C T A G C G HE985301.1 ARV Austrilia 2012.seq 908 C G T C G C A G A C G T C C A JX145334.1 GRV strain 03G China 2012.se 338 C G T C G C A G A C G T C C A JX826587.1 DRV strain TH11 China 2015.s 338 C G T C G C A G A C G T C C A KF729971.1 GRV strain YY10G cell China 469 C T T C G C T T G C G T G T A KF809668.1 D20 99 Hungary 2013.seq 908 C G T C G C A G A C G T C C A KJ879930.1 DRV strain SD-12 China 2014. 995 A T G C G T T A T C G G G T G L07069.1 ARV 1994.seq 986 A C G G A A A C T C C A C T G L39002.1 ARV 1995.seq C T C T A A C G A A T C T T A Majority ------------------+----------- 1030 ------------------+----------- 310 C T C T A A C G A A T C T T A JS-01.seq 1009 C C A T C T C C A A T T T G A AF330703.1 ARV-S1133 SPAIN 2000.seq 205 C G T - - A T G G A T A T G A AJ310525.1 MDRV strain 89026 France 200 431 C T A T T G C C A A T T T G A HE985301.1 ARV Austrilia 2012.seq 923 C T T T A A C G A A T C T T A JX145334.1 GRV strain 03G China 2012.se 353 C T C T A A C G A A T C T T A JX826587.1 DRV strain TH11 China 2015.s 353 C T C T A A C G A A T C T T A KF729971.1 GRV strain YY10G cell China 484 C G T - - G T G G A T A T G A KF809668.1 D20 99 Hungary 2013.seq 923 C T C T A A C G A A T C T T A KJ879930.1 DRV strain SD-12 China 2014. 1010 A T A T A A C T A A C C T T A L07069.1 ARV 1994.seq 1001 C C A T C T C C A A T T T G A L39002.1 ARV 1995.seq C G T C A A C C G T C T C A T Majority --------+-------------------+- 1040 1050 --------+-------------------+- 325 C G T C A A C C G T T T C A T JS-01.seq 1024 A G A G T G A T A T C T C G T AF330703.1 ARV-S1133 SPAIN 2000.seq 218 T G T A C A A C T C C T T T T AJ310525.1 MDRV strain 89026 France 200 446 G G A G T G A T G T A T C G G HE985301.1 ARV Austrilia 2012.seq 938 C G T C A A C C G T C T C A T JX145334.1 GRV strain 03G China 2012.se 368 C A T C A A C C G T T T C G T JX826587.1 DRV strain TH11 China 2015.s 368 C G T C A A C C G T T T C A T KF729971.1 GRV strain YY10G cell China 497 T A T A T A A C T C C T T T T KF809668.1 D20 99 Hungary 2013.seq 938 C A T C A A C C G T T T C A T KJ879930.1 DRV strain SD-12 China 2014. 1025 A T T C C T C A G T G T C A G L07069.1 ARV 1994.seq 1016 A G A G T G A T A T C T C G T L39002.1 ARV 1995.seq C T C A G T C T C T T T C G A Majority ------------------+----------- 1060 ------------------+----------- 340 C T C A G T C T C T T T C G A JS-01.seq 1039 C G A A C G G T T T A G C T A AF330703.1 ARV-S1133 SPAIN 2000.seq 233 C T G A T T C T T - - - - - - AJ310525.1 MDRV strain 89026 France 200 461 C G A A C G G T T T G A A T A HE985301.1 ARV Austrilia 2012.seq 953 C T C A G T C T C T T T C G A JX145334.1 GRV strain 03G China 2012.se 383 C T C A G T C T C T T A C G A JX826587.1 DRV strain TH11 China 2015.s 383 C T C A G T C T C T T T C G A KF729971.1 GRV strain YY10G cell China 512 C T G A G T C T C - - - - - - KF809668.1 D20 99 Hungary 2013.seq 953 C T C A G T C T C T T G T G A KJ879930.1 DRV strain SD-12 China 2014. 1040 C G C A G G G G C T T A C T A L07069.1 ARV 1994.seq 1031 C G A A C G G T T T A G C T A L39002.1 ARV 1995.seq T T T C T G A T C T C C A G C Majority --------+-------------------+- 1070 1080 --------+-------------------+- 355 T T T C T G A T C T C C A G C JS-01.seq 1054 T T A C A G A T C T G C A G G AF330703.1 ARV-S1133 SPAIN 2000.seq 242 T A T C C G A T T T A G G C G AJ310525.1 MDRV strain 89026 France 200 476 T T A C A G A T C T A C A G A HE985301.1 ARV Austrilia 2012.seq 968 T T T C T G A T C T C C A G C JX145334.1 GRV strain 03G China 2012.se 398 T T T C T G A T C T C C A G C JX826587.1 DRV strain TH11 China 2015.s 398 T T T C T G A T C T C C A G C KF729971.1 GRV strain YY10G cell China 521 T A T C C G G T T T A G G T G KF809668.1 D20 99 Hungary 2013.seq 968 T T T C T G A T C T C C A G C KJ879930.1 DRV strain SD-12 China 2014. 1055 T T T C T A G C C T C G A A C L07069.1 ARV 1994.seq 1046 T T A C A G A T C T G C A G G L39002.1 ARV 1995.seq A A C G A G T T A C G G C C T Majority ------------------+----------- 1090 ------------------+----------- 370 A A C G A G T T A C G G C C T JS-01.seq 1069 A T C G T G T T A A A T C A T AF330703.1 ARV-S1133 SPAIN 2000.seq 257 A C C G T G T T G C T A A G T AJ310525.1 MDRV strain 89026 France 200 491 A T C G C A T T A A A T C T T HE985301.1 ARV Austrilia 2012.seq 983 A A C G A G T T A C G G C C T JX145334.1 GRV strain 03G China 2012.se 413 G A C G A G T C A C G G C C T JX826587.1 DRV strain TH11 China 2015.s 413 A A C G A G T T A C G G C C T KF729971.1 GRV strain YY10G cell China 536 A T C G T G T T A C T A A G T KF809668.1 D20 99 Hungary 2013.seq 983 A A C G A G T T A C G G C C T KJ879930.1 DRV strain SD-12 China 2014. 1070 A A C G C G T C C A G G C G C L07069.1 ARV 1994.seq 1061 A T C G T G T T A A A T C A T L39002.1 ARV 1995.seq T A G A A C G A T C G G C G T Majority --------+-------------------+- 1100 1110 --------+-------------------+- 385 T A G A A C G A T C G G - G T JS-01.seq 1084 T G G A G T C T A C C G C G A AF330703.1 ARV-S1133 SPAIN 2000.seq 272 T A G A A C G C G A G G C G T AJ310525.1 MDRV strain 89026 France 200 506 T G G A G T C C G A T A C G A HE985301.1 ARV Austrilia 2012.seq 998 T A G A A C G A T C G G - G C JX145334.1 GRV strain 03G China 2012.se 428 T A G A A C G A T C G G - G T JX826587.1 DRV strain TH11 China 2015.s 428 T A G A A C G A T C G G - G T KF729971.1 GRV strain YY10G cell China 551 T A G A A C G C G G G G T A T KF809668.1 D20 99 Hungary 2013.seq 998 T A G A A C G A T C G G - G T KJ879930.1 DRV strain SD-12 China 2014. 1085 T A G A A G G G G G T T C T A L07069.1 ARV 1994.seq 1076 T G G A G T C T A C C G C G A L39002.1 ARV 1995.seq G T T A T G C T G A C G C T G Majority ------------------+----------- 1120 ------------------+----------- 399 G G T G T G C T G A C G C G G JS-01.seq 1099 G T C A T G G T C T A T C T T AF330703.1 ARV-S1133 SPAIN 2000.seq 287 C A T A C A T T A A G A C T G AJ310525.1 MDRV strain 89026 France 200 521 G T C A T G G C T T G T C C T HE985301.1 ARV Austrilia 2012.seq 1012 G G C G C G C C G A C G C A G JX145334.1 GRV strain 03G China 2012.se 442 G G T G C G C C A A C G C A G JX826587.1 DRV strain TH11 China 2015.s 442 G G T G T A C T G A C G C G G KF729971.1 GRV strain YY10G cell China 566 C T C T C A T T A A A A C T G KF809668.1 D20 99 Hungary 2013.seq 1012 G G T A C G C C G A C G C A G KJ879930.1 DRV strain SD-12 China 2014. 1100 G T A C G A G T C T C T T A T L07069.1 ARV 1994.seq 1091 G T C A T G G T C T A T C T C L39002.1 ARV 1995.seq T T T G G - G C T C C C T T G Majority --------+-------------------+- 1130 1140 --------+-------------------+- 414 T T T G A A G C T C C C T T G JS-01.seq 1114 T T T C G - C C T C C G C T T AF330703.1 ARV-S1133 SPAIN 2000.seq 302 T C C G G - G C T C C T T T G AJ310525.1 MDRV strain 89026 France 200 536 T T T C G - C C C C C T C T T HE985301.1 ARV Austrilia 2012.seq 1027 T T T G A A G C T C C C T T G JX145334.1 GRV strain 03G China 2012.se 457 T T T G A A G C T C C C T T G JX826587.1 DRV strain TH11 China 2015.s 457 T T T G A A G C T C C C T T G KF729971.1 GRV strain YY10G cell China 581 T C C G G - G C T C C T T T G KF809668.1 D20 99 Hungary 2013.seq 1027 T T T G A A G C C C C C T C G KJ879930.1 DRV strain SD-12 China 2014. 1115 T T G C T - G A T C C T C T C L07069.1 ARV 1994.seq 1106 T T T C G - C C T C C G C T T L39002.1 ARV 1995.seq C A T G T A C A T G A C G G A Majority ------------------+----------- 1150 ------------------+----------- 429 C A A C T A C A G A A C G G A JS-01.seq 1128 A G T G T C G C T G A C G G C AF330703.1 ARV-S1133 SPAIN 2000.seq 316 C A T G T C A C T G A C G G C AJ310525.1 MDRV strain 89026 France 200 550 A G T G T T G C C G A T G G T HE985301.1 ARV Austrilia 2012.seq 1042 C G G C T A C A G A A C G G A JX145334.1 GRV strain 03G China 2012.se 472 C A A C T G C A A A A C G G A JX826587.1 DRV strain TH11 China 2015.s 472 C A A C T A C A G A A C G G A KF729971.1 GRV strain YY10G cell China 595 C A C G T C A C T G A C G G C KF809668.1 D20 99 Hungary 2013.seq 1042 C A A C T A C A A A A C G G A KJ879930.1 DRV strain SD-12 China 2014. 1129 A A G T T A G A A G C T G G G L07069.1 ARV 1994.seq 1120 A G T G T C G C T G A C G G C L39002.1 ARV 1995.seq G T G G T C T C A C T C C A A Majority --------+-------------------+- 1160 1170 --------+-------------------+- 444 G T C G T C T C A C T C C A A JS-01.seq 1143 G T G G T T T C A T T A G A C AF330703.1 ARV-S1133 SPAIN 2000.seq 331 G A G C T G G C T C T T T T G AJ310525.1 MDRV strain 89026 France 200 565 G T G G T A T C T C T A G A T HE985301.1 ARV Austrilia 2012.seq 1057 G T C G T C T C A C T C C A A JX145334.1 GRV strain 03G China 2012.se 487 G T C G T C T C A C T C C A A JX826587.1 DRV strain TH11 China 2015.s 487 G T C G T C T C A C T C C A A KF729971.1 GRV strain YY10G cell China 610 G A G C T G A C C C T T T T G KF809668.1 D20 99 Hungary 2013.seq 1057 G T C G T C T C A C T C C A A KJ879930.1 DRV strain SD-12 China 2014. 1144 A C T G T G T C A T T A G A A L07069.1 ARV 1994.seq 1135 G T G G T T T C A T T A G A C L39002.1 ARV 1995.seq G C A T A C C C C T C T T T C Majority ------------------+----------- 1180 ------------------+----------- 459 G C A T C C C C C T C T T T C JS-01.seq 1158 A T G G A C C C C T A C T T C AF330703.1 ARV-S1133 SPAIN 2000.seq 346 G C T A A A C C G T C A T T C AJ310525.1 MDRV strain 89026 France 200 580 A T G G A T C C C T A C T T C HE985301.1 ARV Austrilia 2012.seq 1072 G C A T C T C C C T C C T T C JX145334.1 GRV strain 03G China 2012.se 502 G C A T C T C C C T C T T T C JX826587.1 DRV strain TH11 China 2015.s 502 G C A T C C C C C T C T T T C KF729971.1 GRV strain YY10G cell China 625 G C T A A A C C G T C C T T C KF809668.1 D20 99 Hungary 2013.seq 1072 G C A T C T C C C T C T T T C KJ879930.1 DRV strain SD-12 China 2014. 1159 C T G G A C C C A T A T T T C L07069.1 ARV 1994.seq 1150 A T G G A C C C C T A C T T C L39002.1 ARV 1995.seq T G T T C T T T G T C T C C G Majority --------+-------------------+- 1190 1200 --------+-------------------+- 474 T G T T C T T T G T C T C C G JS-01.seq 1173 T G T T C T C A A C G A G T T AF330703.1 ARV-S1133 SPAIN 2000.seq 361 T G C A C T C T G G A T C C A AJ310525.1 MDRV strain 89026 France 200 595 T G C T C A C A A C G A G T C HE985301.1 ARV Austrilia 2012.seq 1087 T G T T C T T T G T C T C C G JX145334.1 GRV strain 03G China 2012.se 517 T G T T C T T T G T C T C C A JX826587.1 DRV strain TH11 China 2015.s 517 T G T T C T T T G T C T C C G KF729971.1 GRV strain YY10G cell China 640 T G C A C T T T G G A T C C A KF809668.1 D20 99 Hungary 2013.seq 1087 T G T T C T T T G T C T C C G KJ879930.1 DRV strain SD-12 China 2014. 1174 T G C T C T G T A A G C C G T L07069.1 ARV 1994.seq 1165 T G T T C T C A A C G A G T T L39002.1 ARV 1995.seq A T C C T C T C A G G A C C T Majority ------------------+----------- 1210 ------------------+----------- 489 A T C C T C T C C G G A C C T JS-01.seq 1188 T C T T T A A C A T C A T A C AF330703.1 ARV-S1133 SPAIN 2000.seq 376 G T A C T T T C A G G C A C C AJ310525.1 MDRV strain 89026 France 200 610 T C T T T G A C A T C A T A T HE985301.1 ARV Austrilia 2012.seq 1102 A T C C T C T C C G G A C C T JX145334.1 GRV strain 03G China 2012.se 532 A T C C T C T C C G G G C C T JX826587.1 DRV strain TH11 China 2015.s 532 A T C C T C T C C G G A C C T KF729971.1 GRV strain YY10G cell China 655 G T A C T T T C A G G C A C C KF809668.1 D20 99 Hungary 2013.seq 1102 A T C C T C T C C G G A C C T KJ879930.1 DRV strain SD-12 China 2014. 1189 A A C T T G A C A T C G T A T L07069.1 ARV 1994.seq 1180 T C T T T A A C A T C A T A C L39002.1 ARV 1995.seq T C T G A T G A T G C T G T C Majority --------+-------------------+- 1220 1230 --------+-------------------+- 504 G C T G A T G C T G C T G T C JS-01.seq 1203 T C G G C G G A G G C T C A A AF330703.1 ARV-S1133 SPAIN 2000.seq 391 T C A T T G A A T G C T G T C AJ310525.1 MDRV strain 89026 France 200 625 T C A G C A G A A G C T C A G HE985301.1 ARV Austrilia 2012.seq 1117 G C T G A T G C T G C T G T C JX145334.1 GRV strain 03G China 2012.se 547 G C T G A T G C T G C C G T C JX826587.1 DRV strain TH11 China 2015.s 547 A C T G A T G C T G C T G T C KF729971.1 GRV strain YY10G cell China 670 T C A T T A A A C G C G G T C KF809668.1 D20 99 Hungary 2013.seq 1117 G C T G A T G C T G C T G T C KJ879930.1 DRV strain SD-12 China 2014. 1204 T C C G C T G A C G C C C A A L07069.1 ARV 1994.seq 1195 T C G G A G G A G G C T C A A L39002.1 ARV 1995.seq T T C A A G G T T G G T G A G Majority ------------------+----------- 1240 ------------------+----------- 519 T T C A A G G T T G G T G A G JS-01.seq 1218 C T A A T G C A A T T T C G G AF330703.1 ARV-S1133 SPAIN 2000.seq 406 T T T G C C A C C G G T T C C AJ310525.1 MDRV strain 89026 France 200 640 T T G A T G C A A T T T C A G HE985301.1 ARV Austrilia 2012.seq 1132 T T C A A G G T T G G T G A G JX145334.1 GRV strain 03G China 2012.se 562 T T C A A G G T T G G T G A G JX826587.1 DRV strain TH11 China 2015.s 562 T T C A A G G T T G G T G A G KF729971.1 GRV strain YY10G cell China 685 T T T G C C A C C G G C T C C KF809668.1 D20 99 Hungary 2013.seq 1132 T T C A A G G T T G G T G A G KJ879930.1 DRV strain SD-12 China 2014. 1219 T T G A T G C A A T T C C A G L07069.1 ARV 1994.seq 1210 C T A A T G C A A T T T C G G L39002.1 ARV 1995.seq T G G C T G G G A A C T G T C Majority --------+-------------------+- 1250 1260 --------+-------------------+- 534 T G G C T G G G A A C T G T C JS-01.seq 1233 T G G A T G G C A C G G G G T AF330703.1 ARV-S1133 SPAIN 2000.seq 421 T G G C T C G C T A A G A T A AJ310525.1 MDRV strain 89026 France 200 655 T G G G T G G C A A A A G G T HE985301.1 ARV Austrilia 2012.seq 1147 T G G C T G G G A A C T G T C JX145334.1 GRV strain 03G China 2012.se 577 T G G C T G G G A A C T G T C JX826587.1 DRV strain TH11 China 2015.s 577 T G G C T G G G A A C T G T C KF729971.1 GRV strain YY10G cell China 700 T G G C T C G C T A A G A T A KF809668.1 D20 99 Hungary 2013.seq 1147 T G G C T G G G A A C T G T C KJ879930.1 DRV strain SD-12 China 2014. 1234 T G G T C T G T G A A A G G G L07069.1 ARV 1994.seq 1225 T G G A T G G A A C G G G G T L39002.1 ARV 1995.seq A T A T C T G G - - A A A G T Majority ------------------+----------- 1270 ------------------+----------- 549 A T A T C T G G T C A A A G T JS-01.seq 1248 A C T A A C G G - - - - - A T AF330703.1 ARV-S1133 SPAIN 2000.seq 436 G A G G C T G G - - A G T A T AJ310525.1 MDRV strain 89026 France 200 670 A C T A G C G G - - - - - T T HE985301.1 ARV Austrilia 2012.seq 1162 A C A T C T G G T C A A A G T JX145334.1 GRV strain 03G China 2012.se 592 A T A T C T G G T C A A A G T JX826587.1 DRV strain TH11 China 2015.s 592 A T A T C T G G T C A A A G T KF729971.1 GRV strain YY10G cell China 715 G A G G C T G G - - A G T G T KF809668.1 D20 99 Hungary 2013.seq 1162 A T A T C T G G T C A A A G T KJ879930.1 DRV strain SD-12 China 2014. 1249 G A A G A T G G - - - - - T G L07069.1 ARV 1994.seq 1240 A C T A A C G G - - - - - A T L39002.1 ARV 1995.seq C A G T C A T C T C - - T A G Majority --------+-------------------+- 1280 1290 --------+-------------------+- 564 C A G T C A T C T G - - C A A JS-01.seq 1258 C A T C T G A T A C C A T T G AF330703.1 ARV-S1133 SPAIN 2000.seq 449 C C G T C G C C T C G T T C G AJ310525.1 MDRV strain 89026 France 200 680 C A T C T G A C A C T A T T G HE985301.1 ARV Austrilia 2012.seq 1177 C A G T C A T C T G - - C A A JX145334.1 GRV strain 03G China 2012.se 607 C A G T C A T C T G - - C A A JX826587.1 DRV strain TH11 China 2015.s 607 C A G T C A T C T G - - C A A KF729971.1 GRV strain YY10G cell China 728 C C A T C G C C T C G T T C G KF809668.1 D20 99 Hungary 2013.seq 1177 C A G T C A T C T G - - C A A KJ879930.1 DRV strain SD-12 China 2014. 1259 C T A C A A A T T C T A T T G L07069.1 ARV 1994.seq 1250 C A T C T G A T A C C A T T G L39002.1 ARV 1995.seq T C A T G A A C G T G C G G A Majority ------------------+----------- 1300 ------------------+----------- 577 T C A T G A A T G T G C G G A JS-01.seq 1273 A C A T G A C C G T T A A C G AF330703.1 ARV-S1133 SPAIN 2000.seq 464 T C C T G A A C A T G C G G T AJ310525.1 MDRV strain 89026 France 200 695 A C A T G A T C G T T A A C G HE985301.1 ARV Austrilia 2012.seq 1190 T C A T G A A C G T G C G G A JX145334.1 GRV strain 03G China 2012.se 620 T C A T G A A C G T G A G G A JX826587.1 DRV strain TH11 China 2015.s 620 T C A T G A A C G T G C G G A KF729971.1 GRV strain YY10G cell China 743 T C C T A A A C C T G C G G T KF809668.1 D20 99 Hungary 2013.seq 1190 T C A T G A A C G T G C G G A KJ879930.1 DRV strain SD-12 China 2014. 1274 A T A T G G A T G T G A A T G L07069.1 ARV 1994.seq 1265 A C A T G A C T G T T A A C G L39002.1 ARV 1995.seq T T C A T T C A T T T G G G C Majority --------+-------------------+- 1310 1320 --------+-------------------+- 592 T T C A T T C A T T T G G G C JS-01.seq 1288 C T C A C T G T C A T G G A A AF330703.1 ARV-S1133 SPAIN 2000.seq 479 T T C A C C A C T T T G G C C AJ310525.1 MDRV strain 89026 France 200 710 C C C A C T G T C A T G G G A HE985301.1 ARV Austrilia 2012.seq 1205 T T C A T T C A T T T G G G C JX145334.1 GRV strain 03G China 2012.se 635 T A C A T T C A T T T G G G C JX826587.1 DRV strain TH11 China 2015.s 635 T T C A T T C A T T T G G G C KF729971.1 GRV strain YY10G cell China 758 T C C A T C A C T T T G G C C KF809668.1 D20 99 Hungary 2013.seq 1205 T T C A T T C A T T T G G G C KJ879930.1 DRV strain SD-12 China 2014. 1289 C T C A T T G C C A T G G G C L07069.1 ARV 1994.seq 1280 C T T A C T G T C A T G G A A L39002.1 ARV 1995.seq A A C G G A C C A T G T T G C Majority ------------------+----------- 1330 ------------------+----------- 607 A G C G G A C C A T G T T G C JS-01.seq 1303 G A C G C A C T G A T T A T A AF330703.1 ARV-S1133 SPAIN 2000.seq 494 A A C G G A C A A C A T T G T AJ310525.1 MDRV strain 89026 France 200 725 G A C G C A C T G A C T A C A HE985301.1 ARV Austrilia 2012.seq 1220 A G C G G A C C A T G T T G C JX145334.1 GRV strain 03G China 2012.se 650 A G C G G A C C A T G T T G C JX826587.1 DRV strain TH11 China 2015.s 650 A G C G G A C T A T G T T G C KF729971.1 GRV strain YY10G cell China 773 A A C G G A C A A C A T T A T KF809668.1 D20 99 Hungary 2013.seq 1220 A G C G G A C C A T G T T G C KJ879930.1 DRV strain SD-12 China 2014. 1304 C A C G T A C C G A T T A T C L07069.1 ARV 1994.seq 1295 G A C G C A C T G A T T A T A L39002.1 ARV 1995.seq T T A T G T C C T C G C C A A Majority --------+-------------------+- 1340 1350 --------+-------------------+- 622 T T A T G T C C T C G C A A A JS-01.seq 1318 T G A T G T C G T C C A C G G AF330703.1 ARV-S1133 SPAIN 2000.seq 509 T C C T A T C C T C T C C T A AJ310525.1 MDRV strain 89026 France 200 740 T A A T G T C C T C C A C G G HE985301.1 ARV Austrilia 2012.seq 1235 T T A T G T C C T C G C A A A JX145334.1 GRV strain 03G China 2012.se 665 T C A T G T C T T C G C A A A JX826587.1 DRV strain TH11 China 2015.s 665 T T A T G T C C T C G C C A A KF729971.1 GRV strain YY10G cell China 788 T T C T A T C C T C T C C T A KF809668.1 D20 99 Hungary 2013.seq 1235 T T A T G T C T T C G C A A A KJ879930.1 DRV strain SD-12 China 2014. 1319 T C A T G T C A A C T A A G C L07069.1 ARV 1994.seq 1310 T G A T G T C G T C C A C G G L39002.1 ARV 1995.seq A T G T T T T C A C T A T T C Majority ------------------+----------- 1360 ------------------+----------- 637 A T G T A T T C A C T A T T C JS-01.seq 1333 G A A A T C T C A C G G T C A AF330703.1 ARV-S1133 SPAIN 2000.seq 524 A C G T T G T T A C T G T C T AJ310525.1 MDRV strain 89026 France 200 755 G A A G T C T T A C A G T C A HE985301.1 ARV Austrilia 2012.seq 1250 A T G T A T T C A C T A T T C JX145334.1 GRV strain 03G China 2012.se 680 A T G T A T T C A C T A T T C JX826587.1 DRV strain TH11 China 2015.s 680 C T G T A T T C A C T A T T C KF729971.1 GRV strain YY10G cell China 803 A C G T T G T T A C G G T T T KF809668.1 D20 99 Hungary 2013.seq 1250 A T G T A T T C A C T A T T C KJ879930.1 DRV strain SD-12 China 2014. 1334 A A T C G T T G A C T A T C A L07069.1 ARV 1994.seq 1325 G A A A T C T C A C G G T C A L39002.1 ARV 1995.seq C G C C A G G T T C G G G T G Majority --------+-------------------+- 1370 1380 --------+-------------------+- 652 C G C C A G G T T C G G G T G JS-01.seq 1348 - - - C T A G T A A C G T C G AF330703.1 ARV-S1133 SPAIN 2000.seq 539 T C C C A G G C T C A A G T G AJ310525.1 MDRV strain 89026 France 200 770 - - - C C A G C A A T G C T G HE985301.1 ARV Austrilia 2012.seq 1265 C G C C A G G T T C G G G T G JX145334.1 GRV strain 03G China 2012.se 695 C G C C A G G T T C G G G T G JX826587.1 DRV strain TH11 China 2015.s 695 C G C C A G G T T C G G G T G KF729971.1 GRV strain YY10G cell China 818 T C C C G G G C T C C A G C G KF809668.1 D20 99 Hungary 2013.seq 1265 C G C C A G G T T C G G G T G KJ879930.1 DRV strain SD-12 China 2014. 1349 - - - C G G C A T C C C C C G L07069.1 ARV 1994.seq 1340 - - - C T A G T A A C G T C G L39002.1 ARV 1995.seq C G T C T T T G C A G T T A G Majority ------------------+----------- 1390 ------------------+----------- 667 C G T C T T T G C A G C T A G JS-01.seq 1360 T G T T A T T A A C C T T C G AF330703.1 ARV-S1133 SPAIN 2000.seq 554 T T T A C T T G G T G T T G G AJ310525.1 MDRV strain 89026 France 200 782 T G T C T T T A A C C T T C G HE985301.1 ARV Austrilia 2012.seq 1280 C G T C T T T G C A G C T A G JX145334.1 GRV strain 03G China 2012.se 710 C G T C T T T G C A G C T A G JX826587.1 DRV strain TH11 China 2015.s 710 C G T C T T T G C A G C T A G KF729971.1 GRV strain YY10G cell China 833 T T T A C T T G G T A T T G G KF809668.1 D20 99 Hungary 2013.seq 1280 C G T C T T T G C A G C T A G KJ879930.1 DRV strain SD-12 China 2014. 1361 C C A C T C T C G T C T T C G L07069.1 ARV 1994.seq 1352 T G T T A T T A A C C T T C G L39002.1 ARV 1995.seq A T G T G A A T C G C A T A A Majority --------+-------------------+- 1400 1410 --------+-------------------+- 682 A T G T G A A T C G C A T A A JS-01.seq 1375 A T T T A A G T G A C A T A A AF330703.1 ARV-S1133 SPAIN 2000.seq 569 A C A C G T C T C G T C T C A AJ310525.1 MDRV strain 89026 France 200 797 A C T T A A G T T A T A T C A HE985301.1 ARV Austrilia 2012.seq 1295 A T G T G A A T C G C A T A A JX145334.1 GRV strain 03G China 2012.se 725 A T G T G A A T C G T A T A A JX826587.1 DRV strain TH11 China 2015.s 725 A T G T G A A T C G C A T A A KF729971.1 GRV strain YY10G cell China 848 A C G C G T C T C G G C T T A KF809668.1 D20 99 Hungary 2013.seq 1295 A T G T G A A T C G T A T A A KJ879930.1 DRV strain SD-12 China 2014. 1376 A A C T C G A C A G G A T T A L07069.1 ARV 1994.seq 1367 A T T T A A G T G A C A T A A L39002.1 ARV 1995.seq C G A A T C C T G C C T T T G Majority ------------------+----------- 1420 ------------------+----------- 697 C G A C C C C T G C C A T T G JS-01.seq 1390 C G C A T A T C C C A T C A G AF330703.1 ARV-S1133 SPAIN 2000.seq 584 T T G A T C C C A C G T A C G AJ310525.1 MDRV strain 89026 France 200 812 C G A A T A T G C C C T C A G HE985301.1 ARV Austrilia 2012.seq 1310 C G A C C C C T G C C A T T G JX145334.1 GRV strain 03G China 2012.se 740 C G A C C C C T G C C A T T G JX826587.1 DRV strain TH11 China 2015.s 740 T G A C C C C T G C C A T T G KF729971.1 GRV strain YY10G cell China 863 T T G A T C C T A C G T A C G KF809668.1 D20 99 Hungary 2013.seq 1310 C G A C C C C T G C C A T T G KJ879930.1 DRV strain SD-12 China 2014. 1391 C G A A G C T T C C T C C T G L07069.1 ARV 1994.seq 1382 C G C A T A T C C C A T C A G L39002.1 ARV 1995.seq A C G T T G C T C T G G T G A Majority --------+-------------------+- 1430 1440 --------+-------------------+- 712 A C G T T G C T A T G G T G A JS-01.seq 1405 A C C T A G C A C G T C T T G AF330703.1 ARV-S1133 SPAIN 2000.seq 599 A T A C C G C C C T G T T G A AJ310525.1 MDRV strain 89026 France 200 827 A C T T A T C G C G T C T C A HE985301.1 ARV Austrilia 2012.seq 1325 A C G T T G C T A T G G T A A JX145334.1 GRV strain 03G China 2012.se 755 A C G T T G C T A T G G T A A JX826587.1 DRV strain TH11 China 2015.s 755 A C G T T G C T A T G G T A A KF729971.1 GRV strain YY10G cell China 878 A T A C C T C C T T G T T G A KF809668.1 D20 99 Hungary 2013.seq 1325 A C G T T G C T A T G G T A A KJ879930.1 DRV strain SD-12 China 2014. 1406 A T C T C T C A C G T C T G A L07069.1 ARV 1994.seq 1397 A C C T A G C A C G T C T T G L39002.1 ARV 1995.seq C T C C T T G T G C T G C G T Majority ------------------+----------- 1450 ------------------+----------- 727 C T C C T T C T G C T G C A T JS-01.seq 1420 T T C C C A G T G C G G G A T AF330703.1 ARV-S1133 SPAIN 2000.seq 614 C T C C T A G T C C C G C T T AJ310525.1 MDRV strain 89026 France 200 842 T T C C T A G C G C A G G G T HE985301.1 ARV Austrilia 2012.seq 1340 C T C C T T C T G C T G C G T JX145334.1 GRV strain 03G China 2012.se 770 C T C C T T C T G C T G C G T JX826587.1 DRV strain TH11 China 2015.s 770 C T C C T T C C G C T G C G T KF729971.1 GRV strain YY10G cell China 893 C T C C T A G T C C C G C G T KF809668.1 D20 99 Hungary 2013.seq 1340 C T C C T T C T G C T G C G T KJ879930.1 DRV strain SD-12 China 2014. 1421 T T C C A T G T C A C G G T T L07069.1 ARV 1994.seq 1412 T T C C T A G T G C G G G A T L39002.1 ARV 1995.seq T T G C T T C T G C T T C G T Majority --------+-------------------+- 1460 1470 --------+-------------------+- 742 T T G C T T C T G C T T C C T JS-01.seq 1435 T C C A A G C T G C G T C G T AF330703.1 ARV-S1133 SPAIN 2000.seq 629 T T G C C G C T A A C A T G T AJ310525.1 MDRV strain 89026 France 200 857 T T C A A G T T G C G T C G T HE985301.1 ARV Austrilia 2012.seq 1355 T T G C T T C T G C T T C C T JX145334.1 GRV strain 03G China 2012.se 785 T T G C T T C T G C T T C C T JX826587.1 DRV strain TH11 China 2015.s 785 T T G C T T C T G C T T C C T KF729971.1 GRV strain YY10G cell China 908 T T G C C G C T A A C A T G T KF809668.1 D20 99 Hungary 2013.seq 1355 T T G C T T C T G C T T C C T KJ879930.1 DRV strain SD-12 China 2014. 1436 T C C A G C A A G C C A C T T L07069.1 ARV 1994.seq 1427 T C C A A G C T G C G T C G T L39002.1 ARV 1995.seq T T A T G G T T G A C A T A G Majority ------------------+----------- 1480 ------------------+----------- 757 T T A T G G C T G A C A T A G JS-01.seq 1450 T C C C T G T G G A C G T A T AF330703.1 ARV-S1133 SPAIN 2000.seq 644 T T A T G G T C G A C A T G G AJ310525.1 MDRV strain 89026 France 200 872 T T C C T G T A G A C G T G T HE985301.1 ARV Austrilia 2012.seq 1370 T T A T G G C T G A C A T A G JX145334.1 GRV strain 03G China 2012.se 800 T T A T G G C T G A C A T A G JX826587.1 DRV strain TH11 China 2015.s 800 T T A T G G C T G A C A T A G KF729971.1 GRV strain YY10G cell China 923 T T A T G G T T G A C A T G G KF809668.1 D20 99 Hungary 2013.seq 1370 T T A T G G C T G A C A T A G KJ879930.1 DRV strain SD-12 China 2014. 1451 T C C C C G T T G A C A T C T L07069.1 ARV 1994.seq 1442 T C C C T G T G G A C G T A T L39002.1 ARV 1995.seq C T T T C A A A G A C G C T T Majority --------+-------------------+- 1490 1500 --------+-------------------+- 772 C T T T C A A A G A C T C T A JS-01.seq 1465 C A T T C A C C C G C G A T T AF330703.1 ARV-S1133 SPAIN 2000.seq 659 T G T T T G A C G A T G C T T AJ310525.1 MDRV strain 89026 France 200 887 C G T T C A C T A G G G A A T HE985301.1 ARV Austrilia 2012.seq 1385 C T T T C A A G G A C T C T A JX145334.1 GRV strain 03G China 2012.se 815 C T T T C A A A G A C T C T A JX826587.1 DRV strain TH11 China 2015.s 815 C T T T C A A A G A C T C T A KF729971.1 GRV strain YY10G cell China 938 T G T T C G A C G A G G C C T KF809668.1 D20 99 Hungary 2013.seq 1385 C T T T C A A A G A C T C T A KJ879930.1 DRV strain SD-12 China 2014. 1466 C T T T T C A A C G T G A C G L07069.1 ARV 1994.seq 1457 C A T T C A C C C G C G A T T L39002.1 ARV 1995.seq C G A C G G G A G A A G T C T Majority ------------------+----------- 1510 ------------------+----------- 787 A G A C A G G A G A A G T C C JS-01.seq 1480 C T G C G A C T C A T G C G T AF330703.1 ARV-S1133 SPAIN 2000.seq 674 C C A C G A A G G A A A G C T AJ310525.1 MDRV strain 89026 France 200 902 C C T C G A C T C A C A C C T HE985301.1 ARV Austrilia 2012.seq 1400 A G A C A G G A G A A G T C C JX145334.1 GRV strain 03G China 2012.se 830 A G A C C G G A G A G G T C C JX826587.1 DRV strain TH11 China 2015.s 830 A G A C A G G A G A A G T C C KF729971.1 GRV strain YY10G cell China 953 C C A C G A A G G A G A G C T KF809668.1 D20 99 Hungary 2013.seq 1400 A G A C A G G A G A A G T C C KJ879930.1 DRV strain SD-12 China 2014. 1481 G C G T T T C T C A C T C A T L07069.1 ARV 1994.seq 1472 C T G C G A C T C A T G C G T L39002.1 ARV 1995.seq A T G C T T T G T A C A C T A Majority --------+-------------------+- 1520 1530 --------+-------------------+- 802 A T G C T T T A C A C A C T A JS-01.seq 1495 A C C A A G C G T A T G G G G AF330703.1 ARV-S1133 SPAIN 2000.seq 689 T C T C T C T G T C G A C C A AJ310525.1 MDRV strain 89026 France 200 917 A T C A A T C G T A T G G A G HE985301.1 ARV Austrilia 2012.seq 1415 A T G C T C T A C A C A C T A JX145334.1 GRV strain 03G China 2012.se 845 A T G C T T T A C A C A C T A JX826587.1 DRV strain TH11 China 2015.s 845 A T G C T T T A C A C A C T A KF729971.1 GRV strain YY10G cell China 968 T C T C T C T G T C G A C T A KF809668.1 D20 99 Hungary 2013.seq 1415 A T G C T T T A C A C A C T A KJ879930.1 DRV strain SD-12 China 2014. 1496 A C C A G G T C T A T G G G A L07069.1 ARV 1994.seq 1487 A C C A A G C G T A T G G G G L39002.1 ARV 1995.seq C T G G C T C T T T C C G A T Majority ------------------+----------- 1540 ------------------+----------- 817 C T G G C T C T T T C C G A T JS-01.seq 1510 T G T A C T C G A G C - - - T AF330703.1 ARV-S1133 SPAIN 2000.seq 704 C T G G T T C G T T C A G C C AJ310525.1 MDRV strain 89026 France 200 932 C G T A C T C G A G C - - - G HE985301.1 ARV Austrilia 2012.seq 1430 C T G G C T C T T T C C G A T JX145334.1 GRV strain 03G China 2012.se 860 C T G G C T C T T T T C G A T JX826587.1 DRV strain TH11 China 2015.s 860 C T G G C T C T T T C C G A T KF729971.1 GRV strain YY10G cell China 983 C C G G T T C G T T C G A C C KF809668.1 D20 99 Hungary 2013.seq 1430 C T G G C T C T T T T C G A T KJ879930.1 DRV strain SD-12 China 2014. 1511 C A T A C A C A T C C - - - T L07069.1 ARV 1994.seq 1502 T G T A C T C G A G C - - - T L39002.1 ARV 1995.seq C A C C T G C C T T C A C T A Majority --------+-------------------+- 1550 1560 --------+-------------------+- 832 C A C C T T C T T T C T C T A JS-01.seq 1522 C A C G T G T C T T C A C A A AF330703.1 ARV-S1133 SPAIN 2000.seq 719 A T G C C G C C T T C A G G A AJ310525.1 MDRV strain 89026 France 200 944 C G C G T G T C T T C A C T A HE985301.1 ARV Austrilia 2012.seq 1445 C A C C T T C T T T C T C T A JX145334.1 GRV strain 03G China 2012.se 875 C A C C T T C T T T C T C T A JX826587.1 DRV strain TH11 China 2015.s 875 C A C C T T C T T T C T C T A KF729971.1 GRV strain YY10G cell China 998 A T G C C G C C T T C A G G A KF809668.1 D20 99 Hungary 2013.seq 1445 C A C C T T C T T T C T C T A KJ879930.1 DRV strain SD-12 China 2014. 1523 C T C G C G T C T T C A A G A L07069.1 ARV 1994.seq 1514 C A C G T G T C T T C A C A A L39002.1 ARV 1995.seq T T G C T T G G G T A C C G G Majority ------------------+----------- 1570 ------------------+----------- 847 T G C T T T G G G G T C A A A JS-01.seq 1537 T T A C T T T C C C A A C C G AF330703.1 ARV-S1133 SPAIN 2000.seq 734 T T G C G T G G A T A C C G G AJ310525.1 MDRV strain 89026 France 200 959 T C A C T T T C C C A A C C G HE985301.1 ARV Austrilia 2012.seq 1460 T C G C T T G G G T C C C G G JX145334.1 GRV strain 03G China 2012.se 890 T C G C T T G G G T C C C A G JX826587.1 DRV strain TH11 China 2015.s 890 T C G C T T G G G T C C C G G KF729971.1 GRV strain YY10G cell China 1013 T T G C A T G G A T A C C G G KF809668.1 D20 99 Hungary 2013.seq 1460 T C G C T T G G G T C C C G G KJ879930.1 DRV strain SD-12 China 2014. 1538 T T A C A T T C T C G C C A G L07069.1 ARV 1994.seq 1529 T T A C T T T C C C A A C C G L39002.1 ARV 1995.seq T T G C T T C T G A A A C T C Majority --------+-------------------+- 1580 1590 --------+-------------------+- 861 JS-01.seq 1552 G A G G T G A T G G T A C A G AF330703.1 ARV-S1133 SPAIN 2000.seq 749 T T G C T C C C G A G A C T A AJ310525.1 MDRV strain 89026 France 200 974 G T G G T A A T G G C A C A T HE985301.1 ARV Austrilia 2012.seq 1475 T T G C T T C A G A A A C T C JX145334.1 GRV strain 03G China 2012.se 905 T T G C T T C G G A A A C T C JX826587.1 DRV strain TH11 China 2015.s 905 T T G C T T C A G A A A C T C KF729971.1 GRV strain YY10G cell China 1028 T T G C C T C C G A G A C T A KF809668.1 D20 99 Hungary 2013.seq 1475 T T G C T T C G G A A A C T C KJ879930.1 DRV strain SD-12 China 2014. 1553 G C G C T T C A G G T C C C G L07069.1 ARV 1994.seq 1544 G A G G T G A T G G T A C A G L39002.1 ARV 1995.seq G G A A T T A T C A A A T A A Majority ------------------+----------- 1600 ------------------+----------- 861 JS-01.seq 1567 C G A A C A T T C G T T C C T AF330703.1 ARV-S1133 SPAIN 2000.seq 764 A G A A T T A T T T T A T T C AJ310525.1 MDRV strain 89026 France 200 989 C A A HE985301.1 ARV Austrilia 2012.seq 1490 G T A A T T A T C A A A T A A JX145334.1 GRV strain 03G China 2012.se 920 G T A A T T A T C A A A T A A JX826587.1 DRV strain TH11 China 2015.s 920 G T A A T T A T C T A A T A A KF729971.1 GRV strain YY10G cell China 1043 A G A A T T A C T T T A T T C KF809668.1 D20 99 Hungary 2013.seq 1490 G T A A T T A T C A A A T A A KJ879930.1 DRV strain SD-12 China 2014. 1568 C G G T G A T T C A A T T C C L07069.1 ARV 1994.seq 1559 C G A A C A T T C G T T C C T L39002.1 ARV 1995.seq T G G C G G T A C G C T T C A Majority --------+-------------------+- 1610 1620 --------+-------------------+- 861 JS-01.seq 1582 T G A C C G T G C G T A C C G AF330703.1 ARV-S1133 SPAIN 2000.seq 779 G C G C G G T T C G C T T C T AJ310525.1 MDRV strain 89026 France 200 991 HE985301.1 ARV Austrilia 2012.seq 1505 T G G C G T T A C G C T T C A JX145334.1 GRV strain 03G China 2012.se 935 T G G C G T T A C G C T T C A JX826587.1 DRV strain TH11 China 2015.s 935 T G G C G T T A C G C T T C A KF729971.1 GRV strain YY10G cell China 1058 G C G C G G T T C G C T T C T KF809668.1 D20 99 Hungary 2013.seq 1505 T G G C G T T A C G C T T C A KJ879930.1 DRV strain SD-12 China 2014. 1583 T G A C C G T G C G T A C G G L07069.1 ARV 1994.seq 1574 T G A C C G T G C G T A C C G L39002.1 ARV 1995.seq C C A T C G C C A C G G G C T Majority ------------------+----------- 1630 ------------------+----------- 861 JS-01.seq 1597 G C A T C G A C A C - - - C T AF330703.1 ARV-S1133 SPAIN 2000.seq 794 C C A T T G C G A C C A T T T AJ310525.1 MDRV strain 89026 France 200 991 HE985301.1 ARV Austrilia 2012.seq 1520 C C G T C G C C A C G G G C T JX145334.1 GRV strain 03G China 2012.se 950 C C G T C G C C A C G G G C T JX826587.1 DRV strain TH11 China 2015.s 950 C C G T C G C C A C G G G C T KF729971.1 GRV strain YY10G cell China 1073 C C A T C G C G A C C A T T T KF809668.1 D20 99 Hungary 2013.seq 1520 C C G T C G C C A C G G G C T KJ879930.1 DRV strain SD-12 China 2014. 1598 G C A T C G A T A C - - - C T L07069.1 ARV 1994.seq 1589 G C A T C G A C A C - - - C T L39002.1 ARV 1995.seq A A G X T X X X G X X X X X X Majority --------+-------------------+- 1640 1650 --------+-------------------+- 861 JS-01.seq 1609 A A G G T G T G G C G C C G T AF330703.1 ARV-S1133 SPAIN 2000.seq 809 G A AJ310525.1 MDRV strain 89026 France 200 991 HE985301.1 ARV Austrilia 2012.seq 1535 A G G C T G T - G G C G C A C JX145334.1 GRV strain 03G China 2012.se 965 A G JX826587.1 DRV strain TH11 China 2015.s 965 A G KF729971.1 GRV strain YY10G cell China 1088 G A G G T A G T G G C G G C G KF809668.1 D20 99 Hungary 2013.seq 1535 A G G C T G T T G G C G C G C KJ879930.1 DRV strain SD-12 China 2014. 1610 A A G G T G T G G C G C C G T L07069.1 ARV 1994.seq 1601 A A G G T G T G G C G C C G T L39002.1 ARV 1995.seq X X X X X G X X X X X X X X T Majority ------------------+----------- 1660 ------------------+----------- 861 JS-01.seq 1624 A C T G G G A T T G G T T A T AF330703.1 ARV-S1133 SPAIN 2000.seq 810 AJ310525.1 MDRV strain 89026 France 200 991 HE985301.1 ARV Austrilia 2012.seq 1549 G A T G A G A A G A G C T A T JX145334.1 GRV strain 03G China 2012.se 966 JX826587.1 DRV strain TH11 China 2015.s 966 KF729971.1 GRV strain YY10G cell China 1103 C C G C G G G G A A G G G T T KF809668.1 D20 99 Hungary 2013.seq 1550 G A T G A G A A G A G C T A T KJ879930.1 DRV strain SD-12 China 2014. 1625 G C G G C G G C T G A C T A T L07069.1 ARV 1994.seq 1616 A C T G G G A T T G G T T A T L39002.1 ARV 1995.seq X X X X X X X Majority --------+----- 1670 --------+----- 861 JS-01.seq 1639 T C A T C AF330703.1 ARV-S1133 SPAIN 2000.seq 810 AJ310525.1 MDRV strain 89026 France 200 991 HE985301.1 ARV Austrilia 2012.seq 1564 T C A T C JX145334.1 GRV strain 03G China 2012.se 966 JX826587.1 DRV strain TH11 China 2015.s 966 KF729971.1 GRV strain YY10G cell China 1118 A T T C A T C KF809668.1 D20 99 Hungary 2013.seq 1565 T C A T C KJ879930.1 DRV strain SD-12 China 2014. 1640 T C A T A L07069.1 ARV 1994.seq 1631 T C A T C C L39002.1 ARV 1995.seq