# STOCKHOLM 1.0 #=GF ID DUF1220 #=GF AC PF06758.12 #=GF DE Repeat of unknown function (DUF1220) #=GF AU Moxon SJ #=GF SE Pfam-B_6292 (release 10.0) #=GF GA 23.00 23.00; #=GF TC 23.00 23.00; #=GF NC 22.60 22.70; #=GF BM hmmbuild HMM.ann SEED.ann #=GF SM hmmsearch -Z 26740544 -E 1000 --cpu 4 HMM pfamseq #=GF TP Domain #=GF WK DUF1220 #=GF RN [1] #=GF RM 19850849 #=GF RT DUF1220 Domains, Cognitive Disease, and Human Brain Evolution. #=GF RA Dumas L, Sikela JM; #=GF RL Cold Spring Harb Symp Quant Biol. 2009; [Epub ahead of print] #=GF DR INTERPRO; IPR010630; #=GF SQ 46 #=GS F6WNF5_MACMU/351-416 AC F6WNF5.1 #=GS H2R5P0_PANTR/361-426 AC H2R5P0.1 #=GS F6WNF5_MACMU/425-491 AC F6WNF5.1 #=GS H2PY92_PANTR/320-382 AC H2PY92.1 #=GS H2N5T6_PONAB/76-138 AC H2N5T6.1 #=GS F6ZVC2_CALJA/13-75 AC F6ZVC2.1 #=GS H9KXK2_CALJA/3-68 AC H9KXK2.1 #=GS G3SF97_GORGO/138-203 AC G3SF97.1 #=GS F6WNF5_MACMU/501-566 AC F6WNF5.1 #=GS F6THT9_CALJA/266-326 AC F6THT9.1 #=GS F7F9R2_MACMU/418-483 AC F7F9R2.1 #=GS NBPFB_HUMAN/757-821 AC Q86T75.3 #=GS H2N5T6_PONAB/148-213 AC H2N5T6.1 #=GS G3SF97_GORGO/65-128 AC G3SF97.1 #=GS F7HA30_MACMU/140-205 AC F7HA30.1 #=GS F6ZVC2_CALJA/85-150 AC F6ZVC2.1 #=GS F7HA30_MACMU/65-130 AC F7HA30.1 #=GS G3RUM3_GORGO/670-735 AC G3RUM3.1 #=GS G1R8H7_NOMLE/541-606 AC G1R8H7.1 #=GS H2PUI1_PONAB/536-600 AC H2PUI1.1 #=GS M3WBQ6_FELCA/430-498 AC M3WBQ6.1 #=GS W5QH32_SHEEP/413-478 AC W5QH32.1 #=GS F6WNF5_MACMU/191-253 AC F6WNF5.1 #=GS F6ZSJ1_MACMU/7-69 AC F6ZSJ1.1 #=GS H2N649_PONAB/117-179 AC H2N649.1 #=GS F6TSL9_CALJA/175-235 AC F6TSL9.1 #=GS F6THT9_CALJA/179-240 AC F6THT9.1 #=GS F7F9R2_MACMU/178-240 AC F7F9R2.1 #=GS F1MXD9_BOVIN/185-248 AC F1MXD9.2 #=GS F1SB06_PIG/323-394 AC F1SB06.2 #=GS M3WBQ6_FELCA/183-245 AC M3WBQ6.1 #=GS F6VAV7_HORSE/1562-1625 AC F6VAV7.1 #=GS F6WNF5_MACMU/279-341 AC F6WNF5.1 #=GS F7F9R2_MACMU/266-328 AC F7F9R2.1 #=GS H2R5P0_PANTR/268-335 AC H2R5P0.1 #=GS M3WBQ6_FELCA/271-337 AC M3WBQ6.1 #=GS M3XUC9_MUSPF/190-252 AC M3XUC9.1 #=GS M3XNF3_MUSPF/4-71 AC M3XNF3.1 #=GS W5QH32_SHEEP/343-406 AC W5QH32.1 #=GS F1SDB5_PIG/420-486 AC F1SDB5.1 #=GS M3WBQ6_FELCA/347-420 AC M3WBQ6.1 #=GS M3XNF3_MUSPF/81-147 AC M3XNF3.1 #=GS M3XUC9_MUSPF/344-410 AC M3XUC9.1 #=GS G1SQX5_RABIT/415-479 AC G1SQX5.1 #=GS G1SV70_RABIT/411-475 AC G1SV70.1 #=GS G1SQX5_RABIT/339-404 AC G1SQX5.1 F6WNF5_MACMU/351-416 KEVKRQETI....AP...RL......SREPLRVDKY.EVPRELLDGCYLIASV...LPDLTHSCQP.YRRTLYSFEEKQVSLAL H2R5P0_PANTR/361-426 EEVKGQETV....AP...RL......SRGPLRVDKH.EIPQESLDGCCLTPSI...LPDLTPSYHP.YWSTLYSFEDKQVSLAL F6WNF5_MACMU/425-491 KKMEDQQLL....CP...RL......NRRLLQVEEH.EVPQESWDEADSTLPI...PPDLTDSYQSDMRSALHSLEEQQACLAL H2PY92_PANTR/320-382 EQEEEKGPV....SP............RNLQESEEE.EAPQESWDEGDWTLSI...PADMSASYQS.DRSTFHSVEQQQVGLAL H2N5T6_PONAB/76-138 EEEKEKGPV....PP............RNLQESEEE.EAPQESWEEGYLTLSS...PLDMSAFYQS.YRSTLHSLEEQQFGLAL F6ZVC2_CALJA/13-75 EEEEEKGPV....S............TRNLQESVEE.EAPQESWDEDYSTLSI...PPGTFAFNEP.YRTNLHSLEEQQVNLAH H9KXK2_CALJA/3-68 EEEEEKGPV....PP...RL......IRNLQESVEE.EAPQESWDEGDSTLSV...PPGPSAFNET.LRSNLHSLEEQQVISAV G3SF97_GORGO/138-203 EEEEDQDPP....CP...RL......SPELPEVEEQ.DVPQDSLDEVYLTPSL...PHDLSDCQQP.YNSTLYSLEDQLTCFAL F6WNF5_MACMU/501-566 EELADQDPP....CR...RL......RQELLEVEEQ.EVPENSLDEVYLTPLV...PHDLCDCHQA.YSGTLYSLEDQLACSAL F6THT9_CALJA/266-326 EEEEGKAPV....PP....L......SQELLEVKEQ.EAPEDSLDEIYST.......RELYDCHQP.YSSTSSSLEDQLTCSAL F7F9R2_MACMU/418-483 EELEDQDPP....CP...RL......SQELPEVKEQ.EIPEDSVDEVYLTPSV...HRDLSDCHQP.YSSTLSSLEDQLACSAL NBPFB_HUMAN/757-821 EEEEDQGPP....CP...RL......SRELLEVVEP.EVLQDSLDVIQLLPVV...LNSLTPA.SP.TEVPFMHWRKNMLAFLL H2N5T6_PONAB/148-213 VKKEDQEAT....CP...RL......SRELLEVEEA.EVLQDSLDRCYLTPSS...YLELPDLCQP.YGSDFYSLEEQHIGLAI G3SF97_GORGO/65-128 EEAEDQGPP....WP...RL......SSKLLEGEGP.EVLQDSLDRRYSTPSS.....ELCDSCQS.CRSAFYSLKEQYVGLAL F7HA30_MACMU/140-205 EEEEDESPP....CP...RL......SRELLEGEEP.EVLQYSLDRCYSTPSS...YLELPDSCQP.YRSAFYSLEEQHVGLAL F6ZVC2_CALJA/85-150 EEEEDQGPL....CP...RL......SMELVEAEEP.EVFWYSLDILYSTYTA...YLEFYYTCQA.YTYAVFLYAEEHVRLTL F7HA30_MACMU/65-130 EKEEDQNLP....CP...RL......SKELLEVQEP.KVLHDSVDRCYSTPTS...YLELSDSCQP.YRSAFYSLEKQHVGLVL G3RUM3_GORGO/670-735 EGEEDQNPP....CS...RL......SRELPEVVEP.EDLQDSLDRGYSTPFS...YVELPDSCQP.YGSCFYSLEEEHVVFSL G1R8H7_NOMLE/541-606 EGEEDQNPP....CP...RL......SGMPMEAEEP.EVLQDSVDRFYSTPST...YFELDASFQH.YRSDFYSFEEEHVSLAL H2PUI1_PONAB/536-600 EEEEDQNPP....CP...RL......NGVLMEVEGP.EVLQDSLDRCYSTPPT...NFELPDSFQH.ERSAF.SFKKQHSSLAL M3WBQ6_FELCA/430-498 CDEEDQDPT....CPSNTRL......CRERPVAPED.EVPQDSVGECNLTPSV...GHDLSDTYRP.YRSASFTSDQQEVFVGV W5QH32_SHEEP/413-478 ADLEDDSPN....PT...NL......SVEQLVVEEN.EVQPDSLDECYLAASV...GHHLAGSCHP.YRSASFPTERREVCLAL F6WNF5_MACMU/191-253 EVDKVQESP....AP............REAQKAEEK.EVPEDSLEECVISCSN...SHGPCNSNPP.HRNTKITFEEDKATSTL F6ZSJ1_MACMU/7-69 EAEKVQESC....AP............REVQKAEER.EIPEDSLEACAVPCSN...SHSPCESNKP.HRNTKITFEEDKVDSTV H2N649_PONAB/117-179 EAEKVLESS....AP............SEVQKAEES.EVPEDSLEEYAITCSN...SHSPCDSNQP.HRKTKITFEEDKVDSTL F6TSL9_CALJA/175-235 ETENIQESP....AP............REVQKAEEK.EVPQDSLEACAY..SN...SYSPSDSNQP.QRSTKVTFEGGKVDSSL F6THT9_CALJA/179-240 VVKKTQESA....AP............SEVQTAEEK.EVPQDSLEECAATCSN...SYGPSNSNQP.HRSTKLTFEE.KVDSGL F7F9R2_MACMU/178-240 EVEEVQESP....AP............REVQMAEGK.EVPQDSLEECAVTCSN...SHDPSDSNQP.HRSTKITSEEDKVDSAL F1MXD9_BOVIN/185-248 EDEQAQEKL....TP...........SMELQEVEKR.EVPEESKDECGLMPSS...LQGSSDSHQP.YSDDKFKFNELEVDLGQ F1SB06_PIG/323-394 EEVDGQEPL....PP...SLPLRIWHSTELQEVAKE.EVLQAFPDEAVLAPCI...QQEGSDCYPP.CSDGKLAFDEQKKGSAL M3WBQ6_FELCA/183-245 LTTSS........CP........TWHSMELPEAEKK.EVLQDTLNECVLTPSI...GQEGCDCYQP.YRDGTFPSDKQEFGSAL F6VAV7_HORSE/1562-1625 AGLE..........PLALRL......SRELQEKEKVIEVLQAKLDARSLTPSS...SHALSDSHRS.PSSSSFLSDELEVCSDM F6WNF5_MACMU/279-341 EEEEGKAPV....PP............RKLQESDEK.EVLQDSLEESVLTSCS...HHDMSQSYQP.CEGTFLALDEQKVCSAQ F7F9R2_MACMU/266-328 EEEQGKAPV....PP............RKLQDSEEK.GVLKDLPEECVFSHSR...HCDMSNSYLH.HEVTFLALDEEKVCSVQ H2R5P0_PANTR/268-335 EEEEGKVPV....PP...R.......NRQSLESGEL.TNLTDFLISPVVSHVANPGHHDKSNSYLH.REVSSLALDEQKVCSAQ M3WBQ6_FELCA/271-337 EGLKGRESD....AP...RL......SRQLLEVVEE.EITWDSLDERYWTYSV...LPDLSDSYWPYGSTAVFSPEELEVSSAL M3XUC9_MUSPF/190-252 EVNVQFSPP.................CRLTTQLLEQ.DTSRDTPDERYLTYSV...LPDMSDSYWPYRSSAIFSPENPQVCSSL M3XNF3_MUSPF/4-71 DGLKGQESV....AP..SRL......SKHLLEVVEK.DTSWDSPDECYLTYSV...LPDLSDSYWPYKSTAIFSPENPEVCSSL W5QH32_SHEEP/343-406 KGPEVV.......AP...RF......SRQLPQMRQN.GVPRDSLDEYYLTYSV...LPGLSDSFWPYRSNAIFSLEDVDVSYAW F1SDB5_PIG/420-486 APTPDTHPV....CP...SL......RGELPPMAEC.GVPLNSLDGSAWSCPG...LPDLSDSFWPYRSAATLSFENMDVPDAQ M3WBQ6_FELCA/347-420 EEEQDQDLTCARNLPFPTRF......GRELQESAEQ.DVHQDSLDERYLTYSA...LPDPSDSPWTHRRANINSYEDLDVCPAL M3XNF3_MUSPF/81-147 EEKEDQDLV....GP...RL......SMMLPEVKEQ.DAQGDSLGECSLTDSP...PPESSDQHATYRRADINSFKDMGICSAL M3XUC9_MUSPF/344-410 FEEEDQDPL....GP...KP......SLCLPEVEEH.GPPWDSLDQCYLTHSA...FRDLADLHGTSTRADRNSFDDMDSSSAL G1SQX5_RABIT/415-479 EMQEEAQAL....SH..TSL......IREIPEIEDQ.DVSQDSHGMC.LTPAL...LPEASDC.SH.TSSTWSSLEKQPVCSAL G1SV70_RABIT/411-475 NDEDSHPPF....PP..SSL......IREIPEIEDQ.DVSQDSHGTC.LTPAL...LPEASD..WPHSRSTWSSLEKQPVCSAL G1SQX5_RABIT/339-404 HEVEVQEQV.............VTYTSRELPEEQEQ.EDPDDSLDECYLTPSI...SPVVSELDHS.TWSSWCSLEHQDMLSAP #=GC seq_cons Ecc-sppss....sP...ph......s+EL.Es-Ep.EVspDSLDcshlTsSs.....-hoDShpP.hcoshhShE-pcVs.AL //